CGD Gene Ontology Term Finder

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CGD Gene Ontology Term Finder

The GO Term Finder searches for significant shared GO terms, or parents of those GO terms, used to describe the genes in your list to help you discover what the genes may have in common.

To map annotations of a group of genes to more general terms and/or to bin them in broad categories, use the GO Slim Mapper.

Default Settings:

All genes/features in the database
Annotations from all sources and made with all evidence codes
Only hits with p-value <= 0.1 will be displayed on the results page

Step 1: Query Set (Your Input)
Enter Gene/ORF names: (separated by a return or a space)	OR	Upload a file of Gene/ORF names:
Step 2: Choose Ontology (Choose from only one of the 3 ontologies at a time)
Process Function Component
Search using default settings or use Step 3 and/or Step 4 below to customize your options.

Optional Step 3: Specify your background set of genes using the options below.
Use default background set
(all features in the database) OR Enter Gene/ORF names:
(separated by a return or a space)
OR Upload a file of Gene/ORF names:
Customize the gene list in the default or your specific background set (OPTIONAL)
Feature type
Default includes all feature types listed here
ORF ncRNA not physically mapped rRNA snRNA snoRNA tRNA transposable_element_gene

Optional Step 4: Refine the Annotations used for calculation
You can use this option with Step 3. All Annotation Types are included by default.
Select by Annotation Method Manually curated: yes no
High-throughput: yes no
Computational: yes no
Select by Annotation Source AWG CGD
Select by Evidence Codes: IC IDA IEA IEP IGC IGI IMP IPI ISA ISM ISO ISS NAS ND RCA TAS

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CGD Copyright © 2004-2008 The Board of Trustees, Leland Stanford Junior University. Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied.

Optional Step 3: Specify your background set of genes using the options below.
Use default background set (all features in the database)	OR	Enter Gene/ORF names: (separated by a return or a space)	OR	Upload a file of Gene/ORF names:
Customize the gene list in the default or your specific background set (OPTIONAL)
Feature type Default includes all feature types listed here	ORF ncRNA not physically mapped rRNA snRNA snoRNA tRNA transposable_element_gene

Optional Step 4: Refine the Annotations used for calculation You can use this option with Step 3. All Annotation Types are included by default.
Select by Annotation Method	Manually curated: yes no High-throughput: yes no Computational: yes no
Select by Annotation Source	AWG CGD
Select by Evidence Codes:	IC IDA IEA IEP IGC IGI IMP IPI ISA ISM ISO ISS NAS ND RCA TAS