Index of /download/Assembly22_liftOver

Icon  Name                                          Last modified      Size  Description
[PARENTDIR] Parent Directory                                                   -   
[   ] Assembly22_mtDNA_To_Ca19-mtDNA.over.chain     2023-06-29 09:53   93   
[   ] Ca19-mtDNA_To_Assembly22_mtDNA.over.chain     2023-06-29 09:53   93   
[   ] Assembly22_hapB_To_Assembly21.over.chain      2023-06-29 09:53  119K  
[   ] Assembly21_To_Assembly22_hapB.over.chain      2023-06-29 09:53  120K  
[   ] Assembly21_To_Assembly22_hapA.over.chain      2023-06-29 09:53  123K  
[   ] Assembly22_hapA_To_Assembly21.over.chain      2023-06-29 09:53  124K  
[   ] Assembly22_hapB_To_Assembly22_hapA.over.chain 2023-06-29 09:53  215K  
[   ] Assembly22_hapA_To_Assembly22_hapB.over.chain 2023-06-29 09:53  216K  

This directory contains the following chain files needed to perform liftOver
for mapping C. albicans SC5314 chromosomal coordinates between Assembly 21 and
the current version of Assembly 22, or between Assembly 22 haplotypes A and B.

To map Assembly 21 to Assembly 22 (haplotype A or B):
    Assembly21_To_Assembly22_hapA.over.chain
    Assembly21_To_Assembly22_hapB.over.chain

To map Assembly 22 (haplotype A or B) to Assembly 21:
    Assembly22_hapA_To_Assembly21.over.chain
    Assembly22_hapB_To_Assembly21.over.chain

To map Assembly 19/21 mitochondrial DNA to Assembly 22:
    Ca19-mtDNA_To_Assembly22_mtDNA.over.chain

To map Assembly 22 mitochondrial DNA to Assembly 19/21:
    Assembly22_mtDNA_To_Ca19-mtDNA.over.chain

To map between Assembly 22 haplotypes A and B:
    Assembly22_hapA_To_Assembly22_hapB.over.chain
    Assembly22_hapB_To_Assembly22_hapA.over.chain