Index of /download/sequence/Assembly19/current

Icon  Name                                                     Last modified      Size  Description
[DIR] Parent Directory                                                              -   
[   ] Ca19-mtDNA.fa.gz                                         22-Mar-2004 14:42   12K  GZIP compressed docume>
[   ] Ca19-supercontigs-haploid.fasta.gz                       29-Feb-2008 13:34  4.4M  GZIP compressed docume>
[   ] Ca19-supercontigs.fasta.gz                               29-May-2005 13:21  7.8M  GZIP compressed docume>
[   ] orf_coding_assembly_19.fasta.gz                          30-Jun-2008 21:48  5.6M  GZIP compressed docume>
[   ] orf_coding_haploid_assembly_19.fasta.gz                  30-Jun-2008 22:13  3.1M  GZIP compressed docume>
[   ] orf_genomic_1000_assembly_19.fasta.gz                    30-Jun-2008 21:29   11M  GZIP compressed docume>
[   ] orf_genomic_1000_haploid_assembly_19.fasta.gz            30-Jun-2008 22:02  6.1M  GZIP compressed docume>
[   ] orf_genomic_assembly_19.fasta.gz                         30-Jun-2008 21:39  5.6M  GZIP compressed docume>
[   ] orf_genomic_haploid_assembly_19.fasta.gz                 30-Jun-2008 22:08  3.1M  GZIP compressed docume>
[   ] orf_trans_all_assembly_19.fasta.gz                       30-Jun-2008 21:58  4.0M  GZIP compressed docume>
[   ] orf_trans_all_haploid_assembly_19.fasta.gz               30-Jun-2008 22:21  2.2M  GZIP compressed docume>
[   ] other_features_genomic_1000_assembly_19.fasta.gz         28-Jan-2008 21:54  168K  GZIP compressed docume>
[   ] other_features_genomic_1000_haploid_assembly_19.fasta.gz 28-Jan-2008 22:13   96K  GZIP compressed docume>
[   ] other_features_genomic_assembly_19.fasta.gz              28-Jan-2008 21:55   13K  GZIP compressed docume>
[   ] other_features_genomic_haploid_assembly_19.fasta.gz      28-Jan-2008 22:13  9.1K  GZIP compressed docume>
[   ] other_features_no_introns_assembly_19.fasta.gz           28-Jan-2008 21:55   12K  GZIP compressed docume>
[   ] other_features_no_introns_haploid_assembly_19.fasta.gz   28-Jan-2008 22:13  8.6K  GZIP compressed docume>



This directory contains the most current version of the sequences;
files are updated weekly:

sequence of Assembly 19 contigs, supercontigs and mitochondrial DNA:           
	Ca19-mtDNA.fa.gz
		This file contains the mitochondrial DNA sequence.
	Ca19-supercontigs-haploid.fasta.gz
		This file contains the sequences for the haploid set of Assembly 19 supercontigs in FASTA format.
	Ca19-supercontigs.fasta.gz
		This file contains the sequences for the diploid set of Assembly 19 supercontigs in FASTA format. 

sequence with introns for all ORFs:
	orf_genomic_assembly_19.fasta.gz
	orf_genomic_haploid_assembly_19.fasta.gz

sequence with no introns for all ORFs:
	orf_coding_assembly_19.fasta.gz
	orf_coding_haploid_assembly_19.fasta.gz

sequences with introns and untranslated region 1000 bp upstream and
downstream for all ORFs:
	orf_genomic_1000_assembly_19.fasta.gz
	orf_genomic_1000_haploid_assembly_19.fasta.gz

translation of all ORF regions:
	orf_trans_all_assembly_19.fasta.gz
	orf_trans_all_haploid_assembly_19.fasta.gz

sequences from the systematic C. albicans sequence for the following
feature types: ARS, CEN, rRNA, tRNA, snRNA, snoRNA, ncRNA 
(other types will be added in future):
	other_features_genomic_assembly_19.fasta.gz
	other_features_genomic_haploid_assembly_19.fasta.gz
	other_features_no_introns_assembly_19.fasta.gz
	other_features_no_introns_haploid_assembly_19.fasta.gz

genomic sequence for the above features plus 1000 bp upstream and
downstream sequence:
	other_features_genomic_1000_assembly_19.fasta.gz
	other_features_genomic_1000_haploid_assembly_19.fasta.gz



The files in this directory are in FASTA format. All files are gzip
compressed. There are several freely available software options for
decompressing gzipped files using Windows.  The software and other
useful information is available on these web sites:
 
- WinZip (http://www.winzip.com/)
- Stuffit (http://www.stuffit.com/)
- Gzip (http://www.gzip.org/
    
and the gzip user's manual:
http://www.math.utah.edu/docs/info/gzip_toc.html

Additional sequence documentation is found on the CGD web site at:
http://www.candidagenome.org/help/SequenceHelp.shtml