Index of /download/sequence/Assembly21/current

Icon  Name                                             Last modified      Size  Description
[DIR] Parent Directory                                                      -   
[   ] Ca21_chromosomes.fasta.gz                        10-Dec-2007 18:21  4.0M  GZIP compressed docume>
[DIR] EMBL_format/                                     21-Jul-2008 23:31    -   
[   ] orf_coding_assembly_21.fasta.gz                  01-Jul-2008 01:47  3.0M  GZIP compressed docume>
[   ] orf_genomic_1000_assembly_21.fasta.gz            01-Jul-2008 00:43  6.0M  GZIP compressed docume>
[   ] orf_genomic_assembly_21.fasta.gz                 01-Jul-2008 01:14  3.0M  GZIP compressed docume>
[   ] orf_trans_all_assembly_21.fasta.gz               01-Jul-2008 02:14  2.1M  GZIP compressed docume>
[   ] other_features_genomic_1000_assembly_21.fasta.gz 29-Jan-2008 01:38  109K  GZIP compressed docume>
[   ] other_features_genomic_assembly_21.fasta.gz      29-Jan-2008 01:39   19K  GZIP compressed docume>
[   ] other_features_no_introns_assembly_21.fasta.gz   29-Jan-2008 01:39   10K  GZIP compressed docume>



This directory contains Candida albicans Assembly 21 (A21) sequences
as produced by the A21 collaborators and described in van Het Hoog et
al., 2007: http://genomebiology.com/content/pdf/gb-2007-8-4-r52.pdf

This directory contains the most current version of the sequences;
files are updated weekly:

sequence with introns for all ORFs:
	orf_genomic_assembly_21.fasta.gz

sequence with no introns for all ORFs:
	orf_coding_assembly_21.fasta.gz

sequences with introns and untranslated region 1000 bp upstream and
downstream for all ORFs:
	orf_genomic_1000_assembly_21.fasta.gz  

translation of all ORF regions:
	orf_trans_all_assembly_21.fasta.gz 


sequences from the systematic C. albicans sequence for the following
feature types: ARS, CEN, rRNA, tRNA, snRNA, snoRNA, ncRNA
(other types will be added in future):
	other_features_genomic_assembly_21.fasta.gz 
	other_features_no_introns_assembly_21.fasta.gz 

genomic sequence for the above features plus 1000 bp upstream and
downstream sequence:
	other_features_genomic_1000_assembly_21.fasta.gz 



The files in this directory are in FASTA format. All files are gzip
compressed. There are several freely available software options for
decompressing gzipped files using Windows.  The software and other
useful information is available on these web sites:
 
- WinZip (http://www.winzip.com/)
- Stuffit (http://www.stuffit.com/)
- Gzip (http://www.gzip.org/
    
and the gzip user's manual:
http://www.math.utah.edu/docs/info/gzip_toc.html

Additional sequence documentation is found on the CGD web site at:
http://www.candidagenome.org/help/SequenceHelp.shtml