SEQ_NAME	START	END	STRAND	FEATURE_NAME	TXN_START	TXN_END	EXON_COUNT	EXON_STARTS	EXON_ENDS	CDS_START	CDS_END	GENE_NAME	ALIASES	DESCRIPTION
Ca19-mtDNA	18	3148	+	caalfmr16	18	3148	1	18	3148			RRNL	mtLsurRNA	Mitochondrial ribosomal RNA of the large ribosomal subunit [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca19-mtDNA	3172	3242	+	caalfmt18	3172	3242	1	3172	3242			TRNA		Mitochondrial alanine tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	3275	4063	+	caalfmp01	3275	4063	1	3275	4063	3275	4063	COX2		Subunit II of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; one of three mitochondrially-encoded subunits [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	4002	4072	+	caalfmt19	4002	4072	1	4002	4072			TRNN		Mitochondrial asparagine tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	4131	4571	+	caalfmp02	4131	4571	1	4131	4571	4131	4571	NAD6		Subunit 6 of NADH:ubiquinone oxidoreductase (NADH:ubiquinone dehydrogenase), a multisubunit enzyme complex (complex I) of the mitochondrial inner membrane that catalyzes the first step in mitochondrial respiration [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca19-mtDNA	4571	5524	+	caalfmp03	4571	5524	1	4571	5524	4571	5524	NAD1		Subunit 6 of NADH:ubiquinone oxidoreductase (NADH:ubiquinone dehydrogenase), a multisubunit enzyme complex (complex I) of the mitochondrial inner membrane that catalyzes the first step in mitochondrial respiration [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	9929	10738	-	caalfmp04	9929	10738	1	10738	9929	9929	10738	COX3A		Subunit III of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; identical to Cox3Bp; one of three mitochondrially-encoded subunits [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	10778	10849	+	caalfmt20	10778	10849	1	10778	10849			TRNK1		Mitochondrial lysine tRNA, one of two lysine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	11525	11606	+	caalfmt21	11525	11606	1	11525	11606			TRNL1		Mitochondrial leucine tRNA, one of three leucine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	11614	11696	+	caalfmt22	11614	11696	1	11614	11696			TRNY1		Mitochondrial tyrosine tRNA, one of two tyrosine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	11704	11774	+	caalfmt23	11704	11774	1	11704	11774			TRNH1		Mitochondrial histidine tRNA, one of two histidine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	11780	11852	+	caalfmt24	11780	11852	1	11780	11852			TRNT1		Mitochondrial threonine tRNA, one of two threonine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	11856	11926	+	caalfmt25	11856	11926	1	11856	11926			TRNE1		Mitochondrial glutamate tRNA, one of two glutamate tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	12456	12731	-	caalfmp05	12456	12731	1	12731	12456	12469	12699	ATP9		Subunit 9 of the F0 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca19-mtDNA	12739	12809	+	caalfmt26	12739	12809	1	12739	12809			TRNI		Mitochondrial isoleucine tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	12895	13709	-	caalfmp06	12895	13709	1	13709	12895	12895	13635	ATP6		Subunit 6 of the F0 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca19-mtDNA	13731	13906	-	caalfmp07	13731	13906	1	13906	13731	13760	13906	ATP8		Subunit 8 of the F0 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily conserved enzyme complex required for ATP synthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca19-mtDNA	13945	14017	+	caalfmt27	13945	14017	1	13945	14017			TRNP		Mitochondrial proline tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	14104	14174	+	caalfmt28	14104	14174	1	14104	14174			TRNC		Mitochondrial cysteine tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	14181	14251	+	caalfmt29	14181	14251	1	14181	14251			TRNG		Mitochondrial glycine tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	14771	20926	+	caalfmp08	14771	20926	5	14771|16351|18012|19002|20445	15163|16674|18020|19389|20926	14771	20926	COX1		Subunit I of cytochrome c oxidase, which is the terminal member of the mitochondrial (mt) inner membrane electron transport chain; one of three mt-encoded subunits; alternatively spliced transcripts encode 4 putative splicing endonucleases [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca19-mtDNA	14771	16264	+	CaalfMp08.1	14771	16264	1	14771	16264	14771	16264			Putative endonuclease encoded by the first exon and part of the first intron of the mitochondrial COX1 gene; C-terminus contains a LAGLIDADG domain found in intron-encoded endonucleases; conserved in fungal mitochondria
Ca19-mtDNA	14771	17625	+	CaalfMp08.2	14771	17625	2	14771|16351	15163|17625	14771	17625			Putative endonuclease encoded by the first two exons and part of the second intron of the mitochondrial COX1 gene; C-terminus contains a LAGLIDADG domain found in intron-encoded endonucleases; conserved in fungal mitochondria
Ca19-mtDNA	14771	18980	+	CaalfMp08.3	14771	18980	3	14771|16351|18012	15163|16674|18980	14771	18980			Putative endonuclease encoded by the first three exons and part of the third intron of the mitochondrial COX1 gene; C-terminus contains a LAGLIDADG domain found in intron-encoded endonucleases; conserved in fungal mitochondria
Ca19-mtDNA	14771	20120	+	CaalfMp08.4	14771	20120	4	14771|16351|18012|19002	15163|16674|18020|20120	14771	20120			Putative endonuclease encoded by the first four exons and part of the fourth intron of the mitochondrial COX1 gene; C-terminus contains a LAGLIDADG domain found in intron-encoded endonucleases; conserved in fungal mitochondria
Ca19-mtDNA	21066	21136	+	caalfmt30	21066	21136	1	21066	21136			TRNR1		Mitochondrial arginine tRNA, one of two arginine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	21155	21225	+	caalfmt31	21155	21225	1	21155	21225			TRNV		Mitochondrial valine tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	21228	21298	+	caalfmt32	21228	21298	1	21228	21298			TRNW		Mitochondrial tryptophan tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	21299	21369	+	caalfmt33	21299	21369	1	21299	21369			TRNF		Mitochondrial phenylalanine tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	21408	21478	+	caalfmt34	21408	21478	1	21408	21478			TRNR2		Mitochondrial arginine tRNA, one of two arginine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	21422	22849	+	caalfmp09	21422	22849	1	21422	22849	21422	22849	NAD2		Subunit 2 of NADH:ubiquinone oxidoreductase (NADH:ubiquinone dehydrogenase), a multisubunit enzyme complex (complex I) of the mitochondrial inner membrane that catalyzes the first step in mitochondrial respiration [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	22849	23238	+	caalfmp10	22849	23238	1	22849	23238	22849	23238	NAD3		Subunit 3 of NADH:ubiquinone oxidoreductase (NADH:ubiquinone dehydrogenase), a multisubunit enzyme complex (complex I) of the mitochondrial inner membrane that catalyzes the first step in mitochondrial respiration [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	23288	23498	+	ntar_1	23288	23498	1	23288	23498					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca19-mtDNA	23997	26808	+	caalfmp11	23997	26808	3	23997|25695|26074	24389|25730|26808	23997	26808	COB		Cytochrome b, mitochondrially encoded subunit of the ubiquinol-cytochrome c reductase complex (complex III) that catalyzes a step in the respiratory chain of the mitochondrial inner membrane [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca19-mtDNA	23997	25434	+	caalfmp11.1	23997	25434	1	23997	25434	23997	25434			Putative endonuclease encoded by the first exon and part of the first intron of the mitochondrial COB gene; C-terminus contains a GIY-YIG domain found in intron-encoded endonucleases; conserved in fungal mitochondria [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca19-mtDNA	26935	27005	+	caalfmt35	26935	27005	1	26935	27005			TRNM1		Mitochondrial methionine tRNA, one of two methionine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	27022	28483	+	caalfmr17	27022	28483	1	27022	28483			RRNS		Mitochondrial ribosomal RNA of the small ribosomal subunit [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	29570	29824	+	caalfmp12	29570	29824	1	29570	29824	29570	29824	NAD4L		Subunit 4L of NADH:ubiquinone oxidoreductase (NADH:ubiquinone dehydrogenase), a multisubunit enzyme complex (complex I) of the mitochondrial inner membrane that catalyzes the first step in mitochondrial respiration [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	29824	31482	+	caalfmp13	29824	31482	1	29824	31482	29824	31482	NAD5		Subunit 5 of NADH:ubiquinone oxidoreductase (NADH:ubiquinone dehydrogenase), a multisubunit enzyme complex (complex I) of the mitochondrial inner membrane that catalyzes the first step in mitochondrial respiration [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	31492	31563	+	caalfmt36	31492	31563	1	31492	31563			TRNQ		Mitochondrial glutamine tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	31570	31641	+	caalfmt37	31570	31641	1	31570	31641			TRND		Mitochondrial aspartate tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	31646	31729	+	caalfmt38	31646	31729	1	31646	31729			TRNS1		Mitochondrial serine tRNA [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	31925	32005	+	caalfmt39	31925	32005	1	31925	32005			TRNS2		Mitochondrial serine tRNA, one of two serine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	32015	32088	+	caalfmt40	32015	32088	1	32015	32088			TRNL2		Mitochondrial leucine tRNA, one of three leucine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	32120	33514	+	caalfmp14	32120	33514	1	32120	33514	32120	33514	NAD4		Subunit 4 of NADH:ubiquinone oxidoreductase (NADH:ubiquinone dehydrogenase), a multisubunit enzyme complex (complex I) of the mitochondrial inner membrane that catalyzes the first step in mitochondrial respiration [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	33486	33557	+	caalfmt41	33486	33557	1	33486	33557			TRNM2		Mitochondrial methionine tRNA, one of two methionine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	34034	34104	+	caalfmt42	34034	34104	1	34034	34104			TRNE2		Mitochondrial glutamate tRNA, one of two glutamate tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	34108	34180	+	caalfmt43	34108	34180	1	34108	34180			TRNT2		Mitochondrial threonine tRNA, one of two threonine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	34186	34256	+	caalfmt44	34186	34256	1	34186	34256			TRNH2		Mitochondrial histidine tRNA, one of two histidine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	34264	34346	+	caalfmt45	34264	34346	1	34264	34346			TRNY2		Mitochondrial tyrosine tRNA, one of two tyrosine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	34354	34435	+	caalfmt46	34354	34435	1	34354	34435			TRNL3		Mitochondrial leucine tRNA, one of three leucine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	35111	35182	+	caalfmt47	35111	35182	1	35111	35182			TRNK2		Mitochondrial lysine tRNA, one of two lysine tRNAs encoded on the mitochondrial genome [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca19-mtDNA	35222	36031	+	caalfmp15	35222	36031	1	35222	36031	35222	36031	COX3B		Subunit III of cytochrome c oxidase, which is the terminal member of the mitochondrial inner membrane electron transport chain; identical to Cox3Ap; one of three mitochondrially-encoded subunits [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1349	1602	-	ntar_2	1349	1602	1	1602	1349					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1645	2326	+	ntar_3	1645	2326	1	1645	2326	2051	2242			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2563	2943	+	ntar_4	2563	2943	1	2563	2943	2571	2810			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2958	3663	-	ntar_5	2958	3663	1	3663	2958					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3934	4136	-	ntar_6	3934	4136	1	4136	3934					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	4059	4397	+	orf19.6115	4059	4397	1	4059	4397	4059	4397		orf19.13534|IPF21113.1|IPF27828.1|CaO19.11880|CaO19.4402|CaO19.6115|CaO19.13534	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	4409	5290	-	orf19.6114	4409	5290	1	5290	4409	4720	4409		orf19.13533|IPF21135.1|IPF27840.1|orf6.6227|CaO19.13533|CaO19.6114	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr1	8597	8908	-	orf19.6113	8597	8908	1	8908	8597	8908	8597		orf19.13532|IPF21132.1|IPF10769.1|orf6.6228|CaO19.6113|CaO19.13532	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	9972	10135	-	ntar_7	9972	10135	1	10135	9972					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	10718	11485	+	orf19.6112	10718	11485	1	10718	11485	10718	11485	CTA2	orf19.13531|IPF21081.1|IPF10779.1|orf6.6229|CA3851|CTA21|TLO3|CTA210|CaO19.6112|CaO19.13531	Putative transcriptional activator, activates transcription in 1-hybrid assay in S. cerevisiae; downregulated by Efg1p; member of a family of telomere-proximal genes; transcription is positively regulated by Tbf1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	11648	11995	-	orf19.6110	11648	11995	1	11995	11648	11995	11648		orf19.13529|IPF21110.1|IPF10780.2|Contig4-1846_0001|orf6.6231|CaO19.13529|CaO19.6110	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	12141	13744	+	orf19.6109	12141	13744	1	12141	13744	12157	13701	TUP1	orf19.13528|IPF21053.1|IPF4657.2|orf6.6232|CA3852|CaO19.6109|CaO19.13528	Transcriptional corepressor; represses filamentous growth, regulates phase switching, roles in germ tube induction, farnesol response; has C-terminal WD40 repeats; farnesol upregulated in biofilm; in repression pathways with Nrg1p, Rfg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	13763	15003	+	orf19.6105	13763	15003	2	13763|13868	13816|15003	13778	14917	MVD	orf19.13524|MVD1|IPF4647.2|IPF4652.1|Contig4-2342_0002|orf6.6236|CA3853|MVD1.3	Mevalonate diphosphate decarboxylase; functional homolog of S. cerevisiae Erg19p; possible drug target; transcriptionally regulated by carbon source, yeast-hyphal switch, growth phase, antifungals; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	14809	15761	-	orf19.6102	14809	15761	1	15761	14809	15761	14910		orf19.13521|IPF21080.1|IPF4649.1|Contig4-2342_0004|orf6.6239|CA3854|CaO19.6102|CST6|CaO19.13521|IPF4649	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	15595	17171	+	orf19.6103	15595	17171	1	15595	17171	16104	16631		orf19.13522|IPF21098.1|IPF4645.1|Contig4-2342_0005|orf6.6238|CA3855|CaO19.6103|CaO19.13522|IPF4645	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	16324	17328	-	orf19.6100	16324	17328	1	17328	16324	17328	16600		orf19.13519|CRD1|IPF21085.1|IPF4641.1|Contig4-2342_0007|orf6.6241|CA3856|CaO19.6100|CaO19.13519|IPF4641	Protein not essential for viability; similar to S. cerevisiae Crd1p, which is cardiolipin synthase; transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	17330	19131	+	orf19.6099	17330	19131	1	17330	19131	17338	18960	CCT8	orf19.13518|IPF21047.1|IPF4639.1|orf6.6242|CA3857|CaO19.6099|CaO19.13518	Essential protein similar to chaperonin complex subunit 8; involved in hyphal morphogenesis, particularly starvation-induced; production in S. cerevisiae inhibits Ras2p-mediated pathways (including pseudohyphal); CCT1 and TRP1 genes overlap [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	18732	19628	-	orf19.6096	18732	19628	1	19628	18732	19628	18948	TRP1	IPF21091.1|IPF4635.2|Contig4-2998_0001|orf6.6245|CA3858|CaO19.6096|CaO19.13515	Phosphoribosylanthranilate isomerase; enzyme of tryptophan biosynthesis; expected to be unifunctional, unlike trifunctional enzyme of some other fungi; complements E. coli trpC or S. cerevisiae trp1 mutant; CCT1 and TRP1 genes overlap [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	19615	22020	-	orf19.6094	19615	22020	1	22020	19615	21714	19615		orf19.13513|IPF21026.1|IPF4632.2|Contig4-2998_0005|orf6.6247|CA3859|VPS53|CaO19.6094|CaO19.13513|IPF4632	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	22143	25375	+	orf19.6092	22143	25375	1	22143	25375	22270	25326	KEL1	orf19.13511|IPF21143.1|IPF4628.1|Contig4-2998_0008|orf6.6249|CA3860|CaO19.13511|KEL2|CaO19.6092	Protein containing a Kelch repeat domain, similar to S. cerevisiae Kel1p; not required for adherence to buccal epithelial cells or virulence in mouse systemic infection; null mutant colonies exhibit slightly decreased filamentation ratio [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	25327	27656	-	orf19.6091	25327	27656	1	27656	25327	27249	25381	RIM8	orf19.13510|PRR1|RIN|IPF21039.1|IPF4622.1|Contig4-2998_0009|orf6.6250|CA3861|CaO19.6091|CaO19.13510	Protein involved in the pH response pathway; required for activation of the transcription factor Rim101p and for alkaline pH-induced hyphal growth; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	28166	29497	-	orf19.6090	28166	29497	1	29497	28166	29488	28286		orf19.13509|IPF21063.1|IPF4616.2|Contig4-2998_0012|orf6.6252|CA3862|CaO19.6090|NSR1|CaO19.13509	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	29679	31570	+	orf19.6086	29679	31570	1	29679	31570	29804	31543	LEU4	orf19.13505|IPF21043.1|IPF4611.1|LEU41|Contig4-2998_0014|orf6.6255|CA3863|CaO19.6086|CaO19.13505	Putative 2-isopropylmalalate synthase; regulated by Nrg1p, Mig1p, Tup1p, Gcn4p; upregulated in the presence of human whole blood or polymorphonuclear (PMN) cells; macrophage/pseudohyphal-repressed after 16h; fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	31243	31503	-	ntar_8	31243	31503	1	31503	31243					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	31822	32677	+	orf19.6085	31822	32677	1	31822	32677	31842	32444	RPL16A	orf19.13504|IPF21087.1|IPF4609.1|Contig4-2998_0015|orf6.6256|CA3864|CaO19.13504|RPL16|CaO19.6085	Protein similar to S. cerevisiae ribosomal protein Rpl16Ap; transposon mutation affects filamentous growth; genes encoding cytoplasmic ribosomal subunits are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	32680	33318	-	orf19.6084	32680	33318	1	33318	32680	33318	32680		orf19.13503|IPF21095.1|IPF4608.1|Contig4-2998_0016|orf6.6257|CA3865|CaO19.6084|CaO19.13503|IPF4608	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	33954	34446	-	orf19.6083	33954	34446	1	34446	33954	34446	34099		orf19.13502|IPF21127.1|IPF4607.1|Contig4-2998_0017|orf6.6258|CaO19.13502|CaO19.6083	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	34525	35735	-	orf19.6082	34525	35735	1	35735	34525	35679	34525		orf19.13501|IPF21065.1|IPF4606.1|Contig4-2998_0019|orf6.6259|CA3866|CaO19.13501|GSF2|CaO19.6082|IPF4606	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	37723	39612	+	orf19.6081	37723	39612	1	37723	39612	37852	39486	PHR2	orf19.13500|orf6.6260|IPF4604.2|IPF14612.3|Contig4-2998_0022|orf6.1067|CA3867|CaO19.6081	Glycosidase; role in cell wall structure; may act on beta-1,3-glucan prior to beta-1,6-glucan linkage; role in vaginal but not systemic virulence (low pH, not neutral); low pH, high iron, fluconazole induced; Rim101p-downregulated at pH 8 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	40208	41898	-	orf19.6080	40208	41898	1	41898	40208	41771	40485		orf19.13499|IPF21062.1|IPF14615.1|Contig4-2160_0002|orf6.1066|CA0287|BFA1|CaO19.6080|IPF14615	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	42101	42173	-	tt(agu)6	42101	42173	1	42173	42101				tT(AGU)6.2	tRNA-Thr predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	42606	43505	+	orf19.6079	42606	43505	1	42606	43505	42606	43505		IPF14618|IPF14618.2|Contig4-2960_0013|orf6.1065|orf6.1757|CA0286|CaO19.6079|IPF14618.1	Predicted ORF in retrotransposon Tca8 with similarity to the Gag region encoding nucleocapsid-like protein; transcription is downregulated in response to treatment with ciclopirox olamine; filament induced; regulated by Rfg1p, Tup1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	43483	43680	-	orf19.6078.1	43483	43680	1	43680	43483	43677	43483	RFC52	IPF14619.2	ORF Predicted by Annotation Working Group; periodic mRNA expression, peak at cell-cycle G1/S phase [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	43804	45765	+	orf19.6078	43804	45765	1	43804	45765	43804	45765	POL93	IPF17652.3|Contig4-2396_0002|Contig4-2396_0003|Contig4-2960_0011|orf6.241|orf6.1756|CA0037|CaO19.6078|IPF17652.2	Predicted ORF in retrotransposon Tca8 with similarity to the Pol region of retrotransposons encoding reverse transcriptase, protease and integrase; downregulated in response to ciclopirox olamine; induced upon biofilm formation [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	46149	46431	+	ntar_9	46149	46431	1	46149	46431					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	46564	48414	+	orf19.6077	46564	48414	1	46564	48414	46804	48360		orf19.13498|IPF8369.2|IPF27822.1|Contig4-2396_0004|orf6.7621|CA4936|CaO19.13498|CaO19.6077|IPF8369	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	48471	49335	+	orf19.6076	48471	49335	1	48471	49335	48514	49299		orf19.13497|IPF21082.1|IPF8370.1|Contig4-2396_0005|orf6.7620|CA4935|CaO19.6076|VPS29|CaO19.13497	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	49152	49890	-	orf19.6075	49152	49890	1	49890	49152	49844	49296		orf19.13496|IPF21103.1|IPF8371.1|Contig4-2396_0006|orf6.7619|CA4934|CaO19.13496|CDC36|CaO19.6075	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	49969	51091	+	orf19.6074	49969	51091	1	49969	51091	49998	50744	HBR1	orf19.13495|IPF21079.1|IPF8372.1|orf6.7618|CA4933|FAP7|CaO19.6074|CaO19.13495|IPF8372	Essential protein involved in regulation of MTL gene expression; hemoglobin-regulated inhibitor of white-opaque switching, which may affect survival in host; activator of MTLalpha1 and MTLalpha2; transcription is activated by hemoglobin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	50735	51759	-	orf19.6073	50735	51759	1	51759	50735	51682	50807	HMX1	orf19.13494|orf6.7617|YLR205C|IPF21077.1|IPF8374.1|Contig4-2523_0009|CA4932|CaO19.13494|CaO19.6073|IPF8374	Heme oxygenase; acts in utilization of hemin iron; gene transcriptionally activated by heat, low iron, or hemin; negatively regulated by Efg1p; expression greater in low iron; upregulated by Rim101p at pH 8 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	53100	55389	+	orf19.6072	53100	55389	1	53100	55389	53100	54443		orf19.13493|IPF21058.1|IPF8378.2|Contig4-2523_0007|orf6.7616|CA4931|CaO19.6072|CaO19.13493|IPF8378	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	53819	54169	-	ntar_10	53819	54169	1	54169	53819	54169	53891			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	54667	57099	-	orf19.6071	54667	57099	1	57099	54667	57075	54838		orf19.13492|IPF21019.1|IPF8381.2|Contig4-2523_0004|Contig4-2523_0005|orf6.7615|CA4930|MDM20|CaO19.6071|CaO19.13492|IPF8381	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	57822	58215	+	ntar_11	57822	58215	1	57822	58215					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	59271	62570	+	orf19.6070	59271	62570	1	59271	62570	59350	62553	ENA2	orf19.13491|orf6.7614|ENA22|IPF21137.1|IPF1398.2|Contig4-2977_0027|Contig4-2977_0028|CA4929|CaO19.6070|CaO19.13491	Protein described as sodium transporter; transcription is upregulated in response to ciclopirox olamine; alkaline upregulated by Rim101p; repressed upon high-level peroxide stress; upregulated in oral candidiasis clinical isolates [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	63101	64635	+	orf19.6068	63101	64635	1	63101	64635	63203	64351	SVF1	orf19.13489|IPF21067.1|IPF1399.2|Contig4-2977_0025|orf6.7612|CA4928|CaO19.13489|CaO19.6068|IPF1399	Predicted ORF in Assemblies 19, 20 and 21; fluconazole-induced; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment); fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	64593	66481	-	orf19.6066	64593	66481	1	66481	64593	66325	64697		orf19.13487|IPF21050.1|IPF1401.2|Contig4-2977_0023|orf6.7610|CA4927|CaO19.13487|CaO19.6066|IPF1401	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	67814	68859	+	orf19.6065	67814	68859	1	67814	68859	67844	68815		orf19.13486|orf6.7609|IPF21071.1|IPF1404.1|Contig4-2977_0018|CA4926|CaO19.13486|CaO19.6065|IPF1404	Gene transcription regulated by Mig1p and Tup1p; amphotericin B, caspofungin repressed; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	69149	70919	+	orf19.6064	69149	70919	1	69149	70919	69227	70903		orf19.13485|IPF18155.2|IPF1408.1|Contig4-2977_0013|Contig4-2977_0014|orf6.7608|CA4925|CaO19.13485|ATG18|CaO19.6064|IPF1408	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	71042	72755	+	orf19.6063	71042	72755	2	71042|71159	71081|72755	71069	72582	UBP6	orf19.13484|IPF21056.1|IPF1412.1|Contig4-2977_0011|orf6.7607|UBP6.3f|CA4924|CaO19.13484|CaO19.6063|UBP6.3	Predicted ORF in Assemblies 19, 20 and 21; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	72580	73356	-	orf19.6062.3	72580	73356	2	73356|73092	73183|72580	73284	72742		IPF21126.1|IPF1413.1|Contig4-2977_0010|CA4923|IPF1413.3f|IPF1413.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	73506	74022	+	orf19.6062	73506	74022	1	73506	74022	73581	73901		orf19.13483|IPF21130.1|IPF1415.1|Contig4-2977_0005|orf6.7606|CA4922|CaO19.13483|CaO19.6062|IPF1415	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	73934	75420	-	orf19.6061	73934	75420	1	75420	73934	75382	74057		orf19.13482|IPF21059.1|IPF1416.1|Contig4-2977_0004|orf6.7605|CA4921|FMP30|CaO19.13482|CaO19.6061|IPF1416	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	75444	77854	-	orf19.6060	75444	77854	1	77854	75444	77829	75574	GCN20	orf19.13481|IPF21021.1|IPF1420.1|Contig4-2977_0003|orf6.7604|CA4920|CaO19.6060|CaO19.13481	YEF3-subfamily ABC family protein, predicted not to be a transporter [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	77931	78445	-	orf19.6059	77931	78445	1	78445	77931	78368	78009	TTR1	orf19.13480|IPF21120.1|IPF1421.1|Contig4-2977_0001|orf6.7603|CA4919|GRX2|CaO19.13480|TTR11|CaO19.6059	Putative glutaredoxin; described as a glutathione reductase; upregulated in the presence of human neutrophils, and upon benomyl treatment; alkaline downregulated; regulated by Gcn2p and Gcn4p; required for virulence in mouse model [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	78567	79675	-	orf19.6058	78567	79675	1	79675	78567	79670	78642	GLO1	orf19.13479|IPF21068.1|IPF1422.1|orf6.7602|CA4918|CaO19.13479|CaO19.6058	Predicted ORF in Assemblies 19, 20 and 21; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	79990	81168	+	orf19.6057	79990	81168	1	79990	81168	80125	81054		orf19.13478|IPF21074.1|IPF1424.1|Contig4-3053_0035|orf6.7601|CA4917|CaO19.6057|ECM31|CaO19.13478	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	81203	82050	+	orf19.6056	81203	82050	1	81203	82050	81234	81902		orf19.13477|IPF21093.1|IPF1425.1|Contig4-3053_0032|orf6.7600|CA4916|CaO19.13477|CaO19.6056|IPF1425	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	82003	84730	-	orf19.6055	82003	84730	1	84730	82003	84559	82118		orf19.13476|IPF21013.1|IPF1427.1|Contig4-3053_0030|orf6.7599|CA4915|BUL3|CaO19.13476|CaO19.6055|IPF1427	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	85022	87395	-	orf19.6054	85022	87395	1	87395	85022	87249	85081		orf19.13475|IPF21022.1|IPF1428.2|Contig4-3053_0028|orf6.7598|CA4914|CaO19.6054|BUL2|CaO19.13475|IPF1428	Predicted ORF in Assemblies 19, 20 and 21; decreased transcription is observed in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	87773	89905	+	orf19.6053	87773	89905	1	87773	89905	87901	89811	CIS2	orf19.13474|IPF21037.1|IPF1431.1|Contig4-3053_0023|orf6.7597|CA4913|CaO19.6053|ECM38|CaO19.13474	Putative role in regulation of biogenesis of the cell wall; upregulated in biofilm; Gcn4p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	90059	91373	+	orf19.6052	90059	91373	1	90059	91373	90100	91272	CNS1	orf19.13473|IPF21066.1|IPF1432.1|Contig4-3053_0020|orf6.7596|CA4912|CaO19.13473|CaO19.6052	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to radicicol [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	90779	93779	-	orf19.6049	90779	93779	1	93779	90779	93695	91311		orf19.13470|IPF21018.1|IPF1435.1|Contig4-3053_0017|orf6.7593|CA4911|CaO19.13470|CaO19.6049|IPF1435	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	93903	94925	+	orf19.6048	93903	94925	1	93903	94925	93971	94900		orf19.13469|IPF21073.1|IPF1437.1|Contig4-3053_0016|orf6.7592|CA4910|CaO19.6048|CaO19.13469|IPF1437	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	95125	96686	+	orf19.6047	95125	96686	1	95125	96686	95215	96495	TUF1	orf19.13468|IPF21060.1|IPF1439.1|Contig4-3053_0014|orf6.7591|CA4909|CaO19.6047|CaO19.13468	Putative translation elongation factor; macrophage/pseudohyphal-induced; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	96757	101461	+	orf19.6046	96757	101461	1	96757	101461	96817	101424	APC1	orf19.13467|IPF21111.1|IPF1445.2|Contig4-3053_0013|orf6.7590|CA4908|CaO19.6046|CaO19.13467|IPF1445	Predicted ORF in Assemblies 19, 20 and 21; essential for growth; periodic mRNA expression, peak at cell-cycle S/G2 phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	101691	103644	+	orf19.6045	101691	103644	1	101691	103644	101752	103524		orf19.13466|IPF21041.1|IPF1448.1|Contig4-3053_0005|orf6.7589|CA4907|CaO19.6045|PSD1|CaO19.13466	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	103756	104981	+	orf19.6044	103756	104981	1	103756	104981	103869	104810	MOB2	orf19.13465|IPF21075.1|IPF1449.1|Contig4-3053_0003|orf6.7588|CA4906|CaO19.13465|CaO19.6044	Mob1/phocein domain protein of RAM signaling network of cell wall integrity; role in cell separation, cortical actin polarization; required for hyphal growth; interacts with Cbk1p; mRNA binds to She3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	104840	105092	-	ntar_12	104840	105092	1	105092	104840					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	105159	107109	+	orf19.6043	105159	107109	1	105159	107109	105180	106925		orf19.13464|IPF21048.1|IPF1451.1|Contig4-3053_0001|orf6.7587|CA4905|CaO19.13464|CaO19.6043|DLD1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	106976	111148	-	orf19.6041	106976	111148	1	111148	106976	111028	107126	RPO41	orf19.13462|IPF21121.1|IPF1453.2|Contig4-3053_0037|orf6.7585|CA4904|CaO19.6041|CaO19.13462	Predicted ORF in Assemblies 19, 20 and 21; downregulated during core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	111335	112500	-	orf19.6040	111335	112500	1	112500	111335	112252	111572	SNF7	orf19.13461|IPF21090.1|IPF1454.1|Contig4-2972_0022|orf6.7584|VPS32|CA4903|CaO19.13461|CaO19.6040	Protein involved in echinocandin, azole sensitivity; role in proteolytic activation of Rim101p; separable roles in RIM101 pathway and in transport from MVB to vacuole; similar to S. cerevisiae Snf7p component of ESCRT III complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	112753	113872	-	orf19.6039	112753	113872	1	113872	112753	113802	112789		orf19.13460|IPF21070.1|IPF1455.1|Contig4-2972_0019|orf6.7583|CA4902|CaO19.6039|SED5|CaO19.13460	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	114006	115966	-	orf19.6038	114006	115966	1	115966	114006	115879	114128		UGA32|orf19.13459|IPF21042.1|IPF1457.1|Contig4-2972_0013|Contig4-2972_0017|orf6.7582|CA4901|CaO19.6038|CaO19.13459|IPF1457	Predicted zinc-finger protein of unknown function; has similarity to S. cerevisiae Uga3p, which is a transcription factor involved in the regulation of gamma-aminobutyrate metabolism genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	114049	114377	+	ntar_13	114049	114377	1	114049	114377	114049	114270			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	117088	119522	+	orf19.6037	117088	119522	1	117088	119522	117320	119443	ASM3	orf19.13458|orf6.7581|IPF21027.1|IPF1459.1|Contig4-2972_0011|CA4900|IFP2|CaO19.13458|CaO19.6037	Putative secreted acid sphingomyelin phosphodiesterase; induced upon biofilm formation; possible Kex2p substrate; increased transcription is observed in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	119713	122873	+	orf19.6036	119713	122873	1	119713	122873	119768	122809	RIC1	orf19.13457|IPF21148.1|IPF1460.1|Contig4-2972_0009|orf6.7580|CA4899|CaO19.6036|CaO19.13457|IPF1460	Protein not essential for viability; similar to S. cerevisiae Ric1p, which is a guanyl-nucleotide exchange factor [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	122901	123591	+	orf19.6035	122901	123591	1	122901	123591	123067	123432		orf19.13456|IPF21108.1|IPF1461.1|Contig4-2972_0006|orf6.7579|CA4898|CaO19.13456|CaO19.6035|IPF1461	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	123634	125678	-	orf19.6034	123634	125678	3	125678|125370|125170	125586|125335|123634	125597	123869	TUB2	orf19.13455|IPF21061.1|IPF1463.1|Contig4-2972_0005|orf6.7578|CA4897|TUB2.3	Beta-tubulin; functional homolog of ScTub2p; hyphal-induced; fluconazole-induced; gene has two introns; overproduction causes inviability in S. cerevisiae; slow growth, increased white-to opaque switching in ectopic expression strains [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=F]
Ca21chr1	126521	126779	+	tp(ugg)3	126521	126779	2	126521|126577	126556|126779	126540	126691		tP(UGG)3.2	tRNA-Pro predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	126663	129074	-	orf19.6033	126663	129074	1	129074	126663	128619	126790	CMP1	orf19.13454|CNA|IPF18159.2|IPF1465.2|Contig4-2972_0002|orf6.3161|orf6.7577|CA1587|CNA1|CaO19.6033|CMP2	Catalytic subunit of calcineurin (Ca[2+]-calmodulin-regulated S/T protein phosphatase); required for wild-type virulence, resistance to high pH, Na(+), Li(+), Mn(2+), and fluconazole tolerance; micafungin is fungicidal to null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	129157	131047	-	orf19.6032	129157	131047	1	131047	129157	130680	129259	SPE1	orf19.13453|ODC|ODC1|IPF21057.1|IPF1466.2|Contig4-2972_0001|orf6.3160|CA1586|CaO19.13453|CaO19.6032	Ornithine decarboxylase; enzyme of polyamine biosynthesis; not essential for viability; functionally complements polyamine auxotrophy of S. cerevisiae spe1 mutant; upregulated in biofilm; downregulated upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	131235	134123	-	orf19.6031	131235	134123	1	134123	131235	133937	131412		orf19.13452|IPF21016.1|IPF15825.2|Contig4-3066_0007|orf6.3159|CA1585|CaO19.13452|VPS27|CaO19.6031	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	134226	135337	+	orf19.6030	134226	135337	1	134226	135337	134256	134915		orf19.13451|IPF21086.1|IPF15824.2|orf6.3158|CA1584|CaO19.6030|CaO19.13451|IPF15824	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	135327	136867	-	orf19.6029	135327	136867	1	136867	135327	136438	135656	ROT1	orf19.13450|IPF21084.1|IPF18655.1|Contig4-2871_0003|orf6.3157|CA1583|CaO19.6029	Similar to S. cerevisiae Rot1p, which is involved in cell wall 1,6-beta-glucan biosynthesis; has predicted transmembrane region [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	137537	137940	+	ntar_14	137537	137940	1	137537	137940					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	138517	139742	+	ntar_15	138517	139742	1	138517	139742					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	138579	140936	-	orf19.6028	138579	140936	1	140936	138579	140936	138579	HGC1	orf19.13449|IPF7912.2|IPF15332.2|CLN21|Contig4-2280_0001|orf6.1969|orf6.3156|CA1582|CLN3|CaO19.6028	Hypha-specific G1 cyclin-related protein involved in regulation of hyphal morphogenesis; Cdc28p-Hgc1p maintains Cdc11p S394 phosphorylation during hyphal growth; required for virulence in mouse model; regulated by Nrg1p, Tup1p, farnesol [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr1	147577	148496	-	ntar_16	147577	148496	1	148496	147577					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	150512	152082	+	orf19.6027	150512	152082	1	150512	152082	150614	151714		orf19.13448|IPF18867.2|IPF7903.2|Contig4-2833_0014|orf6.1968|orf6.3931|CA2155|CaO19.6027|IPF7903	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	154292	155353	-	orf19.6026	154292	155353	1	155353	154292	155291	154638	ERG2	orf19.13447|IPF21092.1|IPF7901.2|Contig4-2833_0009|orf6.3930|CA2154|CaO19.6026|CaO19.13447	C-8 sterol isomerase; enzyme of ergosterol biosynthesis pathway; converts fecosterol to episterol; mutant is hypersensitive to multiple drugs; ketoconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	155448	156497	+	orf19.6025	155448	156497	1	155448	156497	155448	156329		orf19.13446|IPF21076.1|IPF7900.1|Contig4-2833_0008|orf6.3929|CA2153|CaO19.13446|CaO19.6025|IPF7900	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	156648	158089	+	orf19.6024	156648	158089	1	156648	158089	156648	157694		orf19.13445|IPF21069.1|IPF7899.1|Contig4-2833_0005|orf6.3928|CA2152|CaO19.6024|CaO19.13445|IPF7899	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	158685	160659	+	orf19.6023	158685	160659	1	158685	160659	158729	160528		orf19.13444|IPF21040.1|IPF7898.2|Contig4-2833_0002|orf6.3927|CA2151|MTE4|CaO19.6023|CaO19.13444|ERC2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	160632	162970	-	orf19.6022	160632	162970	1	162970	160632	162676	160946		orf19.13443|IPF21044.1|IPF19940.1|Contig4-2810_0001|Contig4-2810_0002|Contig4-2833_0019|orf6.3926|CA2150|CaO19.13443|CaO19.6022|IPF19940	Predicted ORF in Assemblies 19, 20 and 21; downregulated during core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	166952	167956	+	orf19.6021	166952	167956	1	166952	167956	167084	167830	IHD2	orf19.13442|orf6.3925|IPF21083.1|IPF10761.1|Contig4-2810_0012|CA2149|CaO19.6021|CaO19.13442|IPF10761	Transcriptionally regulated by iron and by yeast-hyphal switching; expression greater in low iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	168387	169654	+	orf19.6020	168387	169654	1	168387	169654	168540	169541		orf19.13441|IPF21072.1|IPF10762.1|Contig4-2810_0014|orf6.3924|CA2148|ATG3|CaO19.6020|AUT1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	169009	169878	-	ntar_17	169009	169878	1	169878	169009					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	169978	172393	+	orf19.6018	169978	172393	1	169978	172393	170165	172261	LRO1	orf19.13439|IPF19448.2|IPF10764.2|IPF18532.1|Contig4-2810_0017|orf6.3922|orf6.91|orf6.3923|CA6302|CA0012|orf19.6019|IPF19448.3f	Predicted ORF in Assemblies 19, 20 and 21; nonessential; similar to S. cerevisiae Lro1p acyltransferase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	174466	176091	+	orf19.6017	174466	176091	1	174466	176091	174466	176091		orf19.13438|IPF21049.1|IPF13839.1|Contig4-2810_0020|orf6.1429|CA0477|MCM1|CaO19.6017|CaO19.13438|IPF13839	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	176291	178544	+	orf19.6016	176291	178544	1	176291	178544	176332	178482		orf19.13437|IPF13843.2|IPF5084.2|Contig4-2810_0023|orf6.1430|orf6.5096|CA0478|CaO19.6016|YAE8	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	178653	179423	+	orf19.6014	178653	179423	1	178653	179423	178697	179314	RRS1	orf19.13435|IPF13845.2|IPF5085.1|orf6.1432|orf6.5094|CA2992|CaO19.6014	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	179760	180965	+	orf19.6013	179760	180965	4	179760|179953|180136|180652	179877|180048|180565|180965	179830	180836		orf19.13434|IPF21106.1|IPF5088.1|orf6.5093|CA2991|IPF5088|IPF5088.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	181338	185381	+	orf19.6012	181338	185381	1	181338	185381	181410	185246		orf19.13433|IPF21122.1|IPF5092.2|orf6.5092|CA2990|CaO19.13433|CaO19.6012|IPF5092	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	185392	190232	-	orf19.6011	185392	190232	5	190232|190018|189907|189700|189177	190094|189972|189786|189357|185392	190152	185514	SIN3	orf19.13432|orf6.5091|IPF21124.1|IPF5096.2|Contig4-2910_0015|orf19.6010.3|CA2988|CA2989|SIN3.exon3|SIN3.exon2|IPF5097.2	Protein similar to S. cerevisiae Sin3p (transcriptional corepressor involved in histone deacetylase recruitment); has paired amphipathic helix PAH1 domain; interacts with ScOpi1p, not CaOpi1p; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	190611	191471	+	orf19.6010.1	190611	191471	2	190611|190841	190756|191471	190704	191162	RPB11	IPF21134.1|IPF5100.2|Contig4-2910_0010|CA2987|RPB11.3f|RPB11.3	ORF Predicted by Annotation Working Group; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	191231	193726	-	orf19.6010	191231	193726	1	193726	191231	193411	191450	CDC5	orf19.13431|IPF21034.1|IPF5102.1|Contig4-2910_0009|orf6.5090|CA2986|CaO19.13431|CaO19.6010	Polo-like kinase; probably essential for viability; depletion causes defects in spindle elongation and causes Cdc35p-dependent filamentation; member of conserved Mcm1p regulon; virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	194192	198013	-	orf19.6009	194192	198013	1	198013	194192	197804	194682	SET1	orf19.13430|IPF21139.1|IPF5105.1|Contig4-2910_0006|Contig4-2910_0007|orf6.5089|CA2985|CaO19.6009|CaO19.13430	Lysine histone methyltransferase; methylates K4 of histone H3; has a role in regulation of white-opaque switching, epithelial cell adhesion, agar-embedded filamentation, and virulence in mouse; unique N-terminus is immunogenic in human [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	198123	198861	+	orf19.6008.3	198123	198861	2	198123|198358	198290|198861	198227	198752		IPF21109.1|IPF5107.1|Contig4-2910_0004|CA6228|IPF5107	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	198878	199339	+	orf19.6008.4	198878	199339	1	198878	199339	198957	199226			Predicted ORF in Assembly 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	199234	202318	-	orf19.3288	199234	202318	1	202318	199234	202255	199322	NMA111	orf19.10798|IPF23911.1|IPF12606.1|orf6.1778|CA0693|orf19.6008.1|orf19.3288.1|IPF12606.5eoc	Predicted ORF in Assemblies 19, 20 and 21; macrophage-induced gene; downregulated in core stress response; fungal-specific (no human or murine homolog); merged with orf19.3288.1 in Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	202454	203679	-	orf19.3289	202454	203679	1	203679	202454	203629	202538		orf19.10799|IPF23943.1|IPF12603.1|Contig4-2295_0001|orf6.1779|CA0694|CaO19.10799|ORC6|CaO19.3289|IPF12603	Phosphorylated protein of unknown function; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	203877	204529	+	orf19.3290	203877	204529	1	203877	204529	203952	204422		orf19.10800|IPF23959.1|IPF12601.1|Contig4-2295_0003|orf6.1780|CA0695|CaO19.3290|CaO19.10800|IPF12601	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	204992	205064	+	ta(agc)4	204992	205064	1	204992	205064				tA(AGC)4.2	tRNA-Ala predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	205101	206414	+	orf19.3291	205101	206414	1	205101	206414	205272	206291	HMT1	orf19.10801|IPF6232.3|IPF12599.2|Contig4-2295_0005|orf6.1781|orf6.7186|CA0696|RMT1|PRMT1|CaO19.3291	Major type I protein arginine methyltransferases (PRMT) involved in asymmetric dimethylation of arginine residues; involved in nuclear export of Npl3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	206456	206953	+	orf19.3292	206456	206953	1	206456	206953	206484	206927		orf19.10802|IPF6231.2|IPF12596.2|Contig4-2295_0006|Contig4-2918_0002|orf6.1782|orf6.7187|CA4602|CaO19.3292|IPF6231	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	206785	207971	-	orf19.3293	206785	207971	1	207971	206785	207862	206924		orf19.10803|IPF6230.2|IPF28806.1|Contig4-2918_0003|orf6.7188|CA4603|CaO19.3293|TSC13|IPF6230	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	208265	208980	+	orf19.3294	208265	208980	1	208265	208980	208292	208747	MBF1	orf19.10804|IPF23957.1|IPF6228.2|Contig4-2918_0005|orf6.7189|CA4604|CaO19.10804|CaO19.3294	Predicted ORF in Assemblies 19, 20 and 21; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	208844	210616	-	orf19.3295	208844	210616	1	210616	208844	210511	209087		orf19.10805|IPF23936.1|IPF6226.2|Contig4-2918_0006|orf6.7190|CA4605|CaO19.3295|CaO19.10805|IPF6226	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	210807	212514	+	orf19.3296	210807	212514	1	210807	212514	210881	212386		orf19.10806|IPF23935.1|IPF6224.1|Contig4-2918_0008|orf6.7191|CA4606|CaO19.10806|CaO19.3296|IPF6224	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	212268	212907	-	orf19.3297	212268	212907	1	212907	212268	212756	212448		orf19.10807|IPF23978.1|IPF6223.1|Contig4-2918_0009|orf6.7192|CA4607|RSM27|CaO19.10807|CaO19.3297|IPF6223	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	213520	220485	+	orf19.3298	213520	220485	1	213520	220485	213644	220408	CCH1	orf19.10808|IPF23954.1|IPF6222.2|Contig4-2918_0012|orf6.7193|CA4608|CaO19.3298|CaO19.10808	Putative voltage-gated Ca2+ channel of the high affinity calcium uptake system; roles in thigmotropism, establishment of galvanotropism; transcription is regulated by Nrg1p and Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	220489	222102	-	orf19.3300	220489	222102	1	222102	220489	222077	220548	ZPR1	orf19.10810|IPF23933.1|IPF6215.2|Contig4-2918_0013|orf6.7195|CA4609|CaO19.3300|CaO19.10810	Protein with putative zinc finger; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment); upregulation correlates with clinical development of fluconazole resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	224368	227069	+	orf19.3301	224368	227069	1	224368	227069	224676	226883		orf19.10811|IPF23919.1|IPF19802.1|Contig4-2098_0005|orf6.7196|CA4610|CaO19.10811|MET30|CaO19.3301|IPF19802	Predicted ORF in Assemblies 19, 20 and 21; induced by heavy metal (cadmium) stress; Hog1p-induced; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	227355	230364	-	orf19.3302	227355	230364	1	230364	227355	229788	227686		orf19.10812|IPF23920.1|IPF10727.1|Contig4-2491_0004|orf6.7197|CA4611|CaO19.3302|CaO19.10812|IPF10727	Predicted ORF in Assemblies 19, 20 and 21; transcription downregulated upon yeast-hyphal switch; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	230682	231503	-	ntar_18	230682	231503	1	231503	230682	231453	231304			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	232533	233329	+	ntar_19	232533	233329	1	232533	233329	233180	233329			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	232779	234953	-	orf19.3303	232779	234953	1	234953	232779	234943	232874		orf19.10813|IPF23921.1|IPF10724.2|Contig4-2491_0009|orf6.7198|CA4612|CaO19.10813|PPM2|CaO19.3303	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	233394	233526	+	ntar_20	233394	233526	1	233394	233526					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	235009	235936	-	orf19.3304	235009	235936	1	235936	235009	235898	235086		orf19.10814|IPF23947.1|IPF7950.2|Contig4-2860_0018|orf6.7199|CA4613|CaO19.10814|RRP40|CaO19.3304|IPF7950	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	236066	238423	-	orf19.3305	236066	238423	1	238423	236066	238310	236094		ZCF17|orf19.10815|IPF23918.1|IPF7952.2|Contig4-2860_0016|orf6.7200|CA4614|CaO19.3305|CaO19.10815|IPF7952	Putative transcription factor with zinc cluster DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	239100	240923	-	orf19.3306	239100	240923	1	240923	239100	240923	239100		orf19.10816|IPF23928.1|IPF7955.2|Contig4-2860_0012|orf6.7201|CA4615|HOP1|CaO19.10816|CaO19.3306|IPF7955	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	239145	240704	+	ntar_21	239145	240704	1	239145	240704	240095	240280			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	240982	242562	-	orf19.3307	240982	242562	1	242562	240982	242513	241122		orf19.10817|IPF23937.1|IPF5761.2|Contig4-2978_0001|orf6.7202|CA4616|CaO19.3307|CaO19.10817|IPF5761	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	242658	244764	+	orf19.3308	242658	244764	1	242658	244764	242750	244672		STB5|orf19.10818|IPF23925.1|IPF5760.2|Contig4-2978_0002|Contig4-2978_0004|orf6.7203|CA4617|CaO19.3308|CaO19.10818	Putative transcription factor with zinc cluster DNA-binding motif; has similarity to S. cerevisiae Stb5p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	244688	244993	-	ntar_22	244688	244993	1	244993	244688					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	245182	246628	+	orf19.3309	245182	246628	1	245182	246628	245215	246462		orf19.10819|IPF23939.1|IPF5757.1|Contig4-2978_0005|orf6.7204|CA4618|CaO19.10819|CaO19.3309|IPF5757	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	246608	247489	-	orf19.3310	246608	247489	1	247489	246608	247422	246670		orf19.10820|IPF23950.1|IPF5756.1|Contig4-2978_0006|orf6.7205|CA4619|CaO19.3310|CaO19.10820|IPF5756	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	247688	248114	-	ntar_23	247688	248114	1	248114	247688	247828	247688			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	247725	248250	+	ntar_24	247725	248250	1	247725	248250	247725	248009			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	248744	249968	+	orf19.3311	248744	249968	1	248744	249968	248825	249874	IFD3	orf19.10821|IPF23944.1|IPF5754.1|Contig4-2978_0008|orf6.7206|CA4620|CaO19.3311|CaO19.10821	Transcription is regulated by Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	250073	252106	+	orf19.3312	250073	252106	1	250073	252106	250112	251986		orf19.10822|IPF23924.1|IPF5753.1|Contig4-2978_0009|orf6.7207|CA4621|CaO19.10822|FMP29|CaO19.3312|IPF5753	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	251496	252610	-	orf19.3314	251496	252610	1	252610	251496	252497	252045		orf19.10824|IPF23965.1|IPF5751.1|Contig4-2978_0010|orf6.7209|CA4622|TRS20|CaO19.10824|CaO19.3314|IPF5751	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	252942	254614	+	orf19.3315	252942	254614	1	252942	254614	253167	254450	CTA9	orf19.10825|IPF23940.1|IPF5750.2|Contig4-2978_0011|orf6.7210|CA4623|CaO19.10825|CaO19.3315	Protein required for normal filamentous growth; induced during the mating process; mRNA binds to She3p; activates transcription in 1-hybrid assay in S. cerevisiae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	254243	255031	-	orf19.3317	254243	255031	1	255031	254243	254974	254627		orf19.10827|IPF18196.2|IPF5748.2|Contig4-2978_0013|orf6.7212|SRB6|CaO19.3317|CaO19.10827	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	255141	257653	-	orf19.3318	255141	257653	1	257653	255141	257452	255179		orf19.10828|IPF23917.1|IPF5747.2|Contig4-2978_0015|orf6.7213|CA4624|CaO19.3318|CaO19.10828|IPF5747	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	257875	258965	+	orf19.3319	257875	258965	1	257875	258965	257930	258913		orf19.10829|IPF23946.1|IPF5742.1|Contig4-2978_0016|orf6.7214|CA4625|CaO19.10829|TXL1|CaO19.3319|IPF5742	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	258474	258871	-	ntar_25	258474	258871	1	258871	258474					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	259001	259354	+	orf19.3320	259001	259354	1	259001	259354	259001	259354			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	259396	261346	+	orf19.3321	259396	261346	1	259396	261346	259656	261182		orf19.10831|IPF5739.1|IPF28804.1|Contig4-2978_0018|orf6.5033|orf6.7216|CA4626|CaO19.3321|MRS7	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	261307	261890	-	orf19.3322	261307	261890	1	261890	261307	261847	261368	DUT1	orf19.10832|IPF5736.1|IPF8317.2|Contig4-2978_0019|orf6.5032|orf6.7217|CA4627|CaO19.3322	dUTP pyrophosphatase; converts dUTP to dUMP and pyrophosphate; cell-cycle regulated if expressed in S. cerevisiae; upstream MluI and SCB transcription regulatory elements; induced by 17-beta-estradiol, ethynyl estradiol, macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	262049	263108	-	orf19.3323	262049	263108	1	263108	262049	263092	262226		orf19.10833|IPF23949.1|IPF8318.2|Contig4-2976_0021|orf6.5031|CA2940|CaO19.10833|CaO19.3323|IPF8318	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	263281	264720	-	orf19.3324	263281	264720	1	264720	263281	264681	263488	TIF	orf19.10834|IPF23942.1|IPF8319.1|TIF1|Contig4-2976_0019|orf6.5030|CA2939|CaO19.3324|CaO19.10834	Protein similar to S. cerevisiae translation initiation factor; upregulated in highly virulent strain compared to less virulent strain; antigenic in human; flucytosine induced; translation-related genes are downregulated upon phagocytosis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	265079	267819	-	orf19.3325	265079	267819	1	267819	265079	267474	265492		orf19.10835|IPF8321|IPF23923.1|IPF8321.2|Contig4-2976_0016|Contig4-2976_0018|orf6.5029|CA2938|GLG21|CaO19.3325|CaO19.10835	Protein described as glycogen synthesis initiator; regulated by Efg1p and Efh1p; Hog1p-downregulated; shows colony morphology-related gene regulation by Ssn6p; increased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	269012	270103	-	orf19.3325.3	269012	270103	2	270103|269621	269999|269012	270022	269382	RPS21B	IPF23913.1|IPF8325.2|Contig4-2976_0010|CA2937|RPS21B.3f|RPS21B.3	Protein described as similar to ribosomal protein S21; regulated by Nrg1p, Tup1p; shows colony morphology-related gene regulation by Ssn6p; transcription is positively regulated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	270279	272006	-	orf19.3327	270279	272006	1	272006	270279	271985	270330	TRM2	orf19.10837|IPF23931.1|IPF8326.2|Contig4-2976_0009|orf6.5027|CA2936|CaO19.10837|TRM21|CaO19.3327|IPF8326	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	272260	274556	-	orf19.3328	272260	274556	1	274556	272260	274208	272385		orf19.10838|IPF23929.1|IPF11521.2|Contig4-2976_0005|orf6.5026|CA2935|CaO19.10838|HOT1|CaO19.3328|IPF11521	Predicted ORF in Assemblies 19, 20 and 21; filament induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	275355	277078	-	orf19.3329	275355	277078	1	277078	275355	276963	275488		orf19.10839|IPF23934.1|IPF11515.2|Contig4-2976_0004|orf6.5025|CA2934|CaO19.3329|LCB3|CaO19.10839|IPF11515	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	278176	279437	-	orf19.3330	278176	279437	1	279437	278176	279273	278233	CRL1	orf19.10840|RHO4|IPF23945.1|IPF11512.1|Contig4-2976_0002|orf6.5024|CA2933|CaO19.3330|CaO19.10840|IPF11512	Predicted GTPase of RHO family; CAAX motif geranylgeranylated; expression in S. cerevisiae causes dominant-negative inhibition of pheromone response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	280372	280907	-	orf19.3330.3	280372	280907	1	280907	280372	280830	280432	POX18	CA1711|IPF11509.2|Contig4-2339_0004|CA6274|orf19.10841|POX18.3f	Protein not essential for viability; similar to Candida maltosa Pox18p, which is a peroxisomal protein; Assembly 21 sequence was updated based on comparative genome analysis and new sequence data, and allelic orf19.10841 was reinstated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	281050	281340	-	ntar_26	281050	281340	1	281340	281050	281340	281101			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	281622	281905	-	ntar_27	281622	281905	1	281905	281622					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	282250	284392	+	orf19.3331	282250	284392	1	282250	284392	282448	284148	ABC1	orf19.10842|IPF14939.2|IPF17140.3|Contig4-2339_0002|orf6.3338|orf6.5023|CA1712|CaO19.3331	Protein described as ubiquinol-cytochrome-c reductase; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	284604	287793	+	orf19.3332	284604	287793	1	284604	287793	284652	287630		orf19.10843|IPF23984.1|IPF19743.1|Contig4-2144_0003|orf6.3339|CA1713|CaO19.10843|CaO19.3332|IPF19743	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	287955	289616	+	orf19.3333	287955	289616	1	287955	289616	288046	289341		orf19.10844|IPF23938.1|IPF14410.1|Contig4-2144_0005|orf6.3340|CA1714|CaO19.10844|NAB2|CaO19.3333	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	289566	290577	-	orf19.3334	289566	290577	1	290577	289566	290461	289712	RPS21	orf19.10845|IPF23952.1|IPF14407.1|RPS2|Contig4-2144_0006|orf6.3341|CA1715|CaO19.3334|CaO19.10845	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; transcription is positively regulated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	290832	291020	-	ntar_28	290832	291020	1	291020	290832					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	291773	292640	+	orf19.3335	291773	292640	1	291773	292640	291860	292462		orf19.10846|IPF23955.1|IPF17237.2|Contig4-1941_0003|orf6.3342|CA1716|CaO19.3335|CaO19.10846|IPF17237	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	296059	296517	+	orf19.3336	296059	296517	1	296059	296517	296059	296517			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	299558	300385	+	orf19.3337	299558	300385	1	299558	300385	299579	300385		orf19.10847|IPF17935.2|orf6.188|CA6275|CaO19.3337|IPF7374.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	300397	301825	+	orf19.3338	300397	301825	1	300397	301825	300397	301779		IPF7374.2|IPF19251.2|Contig4-2235_0002|orf6.494|orf6.4730|CA2718|CaO19.3338|IPF7374.3f|IPF7374	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	305066	306082	-	orf19.3340	305066	306082	1	306082	305066	306028	305324	SOD2	orf19.10848|IPF23953.1|IPF7368.2|Contig4-2785_0004|orf6.4731|CA2719|CaO19.10848|CaO19.3340	Mitochondrial Mn-containing superoxide dismutase; protection against oxidative stress; active as homotetramer; N-terminal 34 amino acids removed upon mitochondrial import; H2O2-induced via Cap1p; alkaline downregulated, farnesol-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	306554	308594	-	orf19.3341	306554	308594	1	308594	306554	308564	306633		orf19.10849|IPF23922.1|IPF7366.2|Contig4-2785_0006|orf6.4732|YDR341C|CA2720|CaO19.3341|CaO19.10849|IPF7366	Putative tRNA-Arg synthetase; essential; S. cerevisiae ortholog is essential; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	309035	311028	+	orf19.3342	309035	311028	1	309035	311028	309137	310987		orf19.10850|IPF23927.1|IPF4799.2|Contig4-2785_0009|orf6.4733|CA2721|CaO19.10850|CaO19.3342|IPF4799	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	311162	312907	+	orf19.3344	311162	312907	1	311162	312907	311215	312774	VPS17	orf19.10852|IPF23932.1|IPF4801.1|Contig4-2785_0010|orf6.4735|CA2722|CaO19.3344|CaO19.10852|IPF4801	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	313068	318007	+	orf19.3345	313068	318007	1	313068	318007	313177	317814	SIZ1	orf19.10853|IPF23962.1|IPF4805.2|Contig4-2944_0001|Contig4-2944_0002|orf6.4736|CA2723|CaO19.10853|CaO19.3345|IPF4805	Protein of unknown function; transcription is negatively regulated by Rim101p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	317870	318745	-	orf19.3347	317870	318745	1	318745	317870	318487	317966	RPB7	orf19.10855|orf6.4738|IPF4809.1|IPF18805.2|Contig4-2944_0003|CA2724|CaO19.3347	Functional homolog of S. cerevisiae Rpb7p, an essential subunit of RNA Polymerase II; enhances hyperfilamentation of an S. cerevisiae rpb4 mutant; suppresses defects of S. cerevisiae rpb4 and ess1 mutants [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	318904	319730	+	orf19.3348	318904	319730	1	318904	319730	318944	319474		orf19.10856|IPF4810.1|IPF18806.1|Contig4-2944_0004|orf6.2240|orf6.4739|CA2725|MRPL23|CaO19.3348|MRPL23A	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	319536	323471	-	orf19.3349	319536	323471	1	323471	319536	323385	319681		orf19.10857|IPF23973.1|IPF4811.2|Contig4-2944_0005|Contig4-2944_0008|orf6.2239|orf6.4740|CA0987|RPB140|CaO19.3349	Putative protein of unknown function; heterozygous null mutant exhibits resistance to parnafungin in the C. albicans fitness test; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	323630	324792	+	orf19.3350	323630	324792	1	323630	324792	323666	324547	MRP20	orf19.10858|IPF23948.1|IPF4814.2|Contig4-2944_0009|orf6.2238|CA0986|CaO19.3350|CaO19.10858|IPF4814	Protein described as component of mitochondrial ribosome; decreased expression in hyphae compared to yeast-form cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	324874	326042	-	orf19.3351	324874	326042	2	326042|325756	325935|324874	325957	324904		orf19.10859|IPF18790.2|IPF4815.2|Contig4-2944_0010|orf6.2237|CA0985|CaO19.10859|CaO19.3351|IPF4815.3f|IPF4815	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	325236	325474	+	ntar_29	325236	325474	1	325236	325474					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	326217	327581	-	orf19.3352	326217	327581	1	327581	326217	327443	326445		orf19.10860|IPF4817.1|IPF17315.2|IPF18807.1|Contig4-2944_0011|orf6.2236|orf6.2296|CA6276|IPF4817.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	327654	328131	+	ntar_30	327654	328131	1	327654	328131					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	331210	332473	+	orf19.3353	331210	332473	1	331210	332473	331372	332055		orf19.10861|IPF4820.2|IPF18808.1|IPF18809.1|Contig4-2944_0016|orf6.2235|orf6.2295|CA1022|IPF4820.5f|IPF4820	Protein described as similar to a mitochondrial complex I intermediate-associated protein; fluconazole-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	331416	332205	-	ntar_31	331416	332205	1	332205	331416	332193	332050			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	332693	334297	+	orf19.3354	332693	334297	2	332693|333322	332752|334297	332739	334096		orf19.10862|IPF28807.1|Contig4-2331_0004|orf6.2294|CaO19.10862|RPS42|CaO19.3354	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	334442	336074	+	orf19.3355	334442	336074	1	334442	336074	334662	336044	ISN1	orf19.10863|IPF4824.1|IPF28805.1|Contig4-2331_0002|orf6.1924|orf6.2293|CA1020|CaO19.3355|IPF4824	Putative inosine 5'-monophosphate 5'-nucleotidase; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	336138	336219	-	ts(uga)1	336138	336219	1	336219	336138				tS(UGA)1.2	tRNA-Ser predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	336662	341515	-	orf19.3356	336662	341515	1	341515	336662	341515	336719	ESP1	orf19.10864|IPF23960.1|IPF14196.2|Contig4-2331_0010|Contig4-2755_0001|Contig4-2755_0003|orf6.1925|CA0789|CaO19.3356|CaO19.10864	Predicted ORF in Assemblies 19, 20 and 21; mutation confers increased sensitivity to nocodazole; periodic mRNA expression, peak at cell-cycle S/G2 phase; mRNA binds to She3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	341723	342534	-	orf19.3357	341723	342534	1	342534	341723	342459	341947		orf19.10865|IPF23956.1|IPF14193.2|Contig4-2755_0005|orf6.1926|CA0790|CaO19.10865|CaO19.3357|IPF14193	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	342805	344018	-	orf19.3358	342805	344018	1	344018	342805	343920	342949	LSC1	orf19.10866|orf6.1927|IPF23941.1|IPF14191.1|Contig4-2755_0006|CA0791|CaO19.10866|CaO19.3358	Protein described as succinate-CoA ligase subunit; transcriptionally regulated by iron; expression greater in high iron; fluconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	344908	345293	+	ntar_32	344908	345293	1	344908	345293					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	345579	348960	+	orf19.3359	345579	348960	1	345579	348960	345579	348779	ARP8	orf19.10867|IPF14479.2|IPF18872.2|Contig4-2755_0011|orf6.1928|orf6.2524|orf6.791|CA1164|CaO19.3359	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog, and to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	348191	348894	-	ntar_33	348191	348894	1	348894	348191	348490	348191			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	350957	353524	+	orf19.3360	350957	353524	1	350957	353524	351115	353118		orf19.10868|IPF19902.1|IPF19845.1|Contig4-2197_0001|Contig4-2891_0002|orf6.2525|orf6.792|CA1165|CaO19.3360|IPF19902	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	353430	354131	-	ntar_34	353430	354131	1	354131	353430					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	354223	354295	+	ta(agc)3	354223	354295	1	354223	354295				tA(AGC)3.2	tRNA-Ala predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	357089	359483	+	orf19.4551	357089	359483	1	357089	359483	357096	359483	CTN1	orf19.12026|orf19.10869|CAT1|IPF18747.1|IPF19359.2|IPF9082.2|YAT1|Contig4-2891_0007|orf6.285|orf6.2526|orf6.6697|CA4207|orf19.3361|orf19.361|CaO19.12026|CaO19.4551	Predicted carnitine acetyl transferase; required for growth on nonfermentable carbon sources but not for hyphal growth or virulence in mouse systemic model; transcription induced in macrophage; macrophage/pseudohyphal-repressed after 16 hr [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr1	360889	363080	+	orf19.4550	360889	363080	1	360889	363080	361046	362947		orf19.12025|IPF22708.1|IPF9079.2|Contig4-2891_0009|Contig4-2891_0010|orf6.6696|CA4206|CaO19.12025|CaO19.4550|IPF9079	Predicted membrane transporter, member of the drug:proton antiporter (12 spanner) (DHA1) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	363929	366456	+	orf19.4549	363929	366456	1	363929	366456	364189	366324	FGR38	orf19.12024|IPF9076.2|IPF14747.3|Contig4-2122_0008|Contig4-2845_0004|Contig4-2891_0011|orf6.6695|orf6.95|CA4205|LPF31|CaO19.4549|IFA10	Protein lacking an ortholog in S. cerevisiae; member of a family of related proteins; transposon mutation affects filamentous growth; macrophage-induced gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	366637	367949	+	orf19.4548	366637	367949	1	366637	367949	366747	367877	MAK32	orf19.12023|IPF22716.1|IPF14749.2|Contig4-2122_0005|orf6.6694|orf6.96|CA0013|CaO19.4548	Downregulated upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	367772	370132	-	orf19.4546	367772	370132	1	370132	367772	369824	367950	HOL4	orf19.12021|IPF14750.2|IPF28353.1|Contig4-2122_0003|orf6.6692|orf6.97|CA4204|CaO19.4546	Protein described as an ion transporter; alkaline upregulated by Rim101p; Plc1p-regulated; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	372140	375602	+	orf19.4545	372140	375602	2	372140|372440	372283|375602	372242	375457	SWI4	orf19.12020|IPF17386.2|IPF28367.1|orf6.6691|CA4203|CaO19.4545|SWI4.3f	Predicted ORF in Assemblies 19, 20 and 21; periodic mRNA expression, peak at cell-cycle G1/S phase; predicted, conserved MBF binding sites upstream of G1/S-regulated genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	375786	376717	+	orf19.4544	375786	376717	1	375786	376717	375852	376571		orf19.12019|IPF22722.1|IPF8047.2|orf6.6690|CA4202|CaO19.12019|CaO19.4544|IPF8047	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	376575	378226	-	orf19.4543	376575	378226	1	378226	376575	378191	376662	UGA2	orf19.12018|IPF22712.1|IPF8048.2|orf6.6689|CA4201|UGA22|CaO19.12018|CaO19.4543|IPF8048	Protein not essential for viability; similar to S. cerevisiae Uga2p, which is succinate semialdehyde dehydrogenase with a role in glutamate catabolism; transcription regulated by Mig1p, Tup1p, Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	378422	379726	-	orf19.4542	378422	379726	1	379726	378422	379667	378480		orf19.12017|IPF22715.1|IPF8051.2|Contig4-2727_0009|Contig4-2727_0010|orf6.6688|CA4200|CaO19.12017|CCL1|CaO19.4542	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	379900	381161	-	orf19.4540	379900	381161	1	381161	379900	380801	380229	UBC8	orf19.12015|IPF22726.1|IPF8054.2|Contig4-2727_0007|orf6.6686|CA4199|CaO19.12015|CaO19.4540	Protein similar to S. cerevisiae Ubc8p; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	381370	382417	-	orf19.4539	381370	382417	1	382417	381370	382108	381554		orf19.12014|IPF22724.1|IPF8055.2|Contig4-2727_0005|orf6.6685|CA4198|CaO19.4539|CaO19.12014|IPF8055	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	382638	383606	-	orf19.4538	382638	383606	1	383606	382638	383606	382776		orf19.12013|IPF22721.1|IPF8057.2|Contig4-2727_0003|orf6.6684|CA4197|CaO19.12013|RNA15|CaO19.4538|IPF8057	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	383739	384842	+	orf19.4537	383739	384842	1	383739	384842	383769	384686		orf19.12012|IPF22720.1|IPF8059.2|Contig4-2727_0002|orf6.6683|CA4196|DST1|CaO19.4537|CaO19.12012	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	384602	386409	-	orf19.4536	384602	386409	1	386409	384602	386296	384806	CYS4	orf19.12011|IPF22713.1|IPF8061.2|Contig4-2727_0001|orf6.6682|CA4195|CaO19.4536|CaO19.12011	Predicted enzyme of sulfur amino acid biosynthesis; antigenic in mouse; upregulated in biofilm; alkaline upregulated; macrophage/pseudohyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	386496	388991	-	orf19.4535	386496	388991	1	388991	386496	388940	386613	PTR3	orf19.12010|IPF22706.1|IPF19799.1|Contig4-1672_0002|Contig4-2727_0013|orf6.6681|CA4194|CaO19.12010|CaO19.4535	Protein not essential for viability; similar to S. cerevisiae Ptr3p, which is a sensor of external amino acids; increased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	389152	390970	-	orf19.4534	389152	390970	1	390970	389152	390816	389287		orf19.12009|IPF22711.1|IPF7535.2|Contig4-1672_0004|orf6.6680|CA4193|CaO19.4534|CaO19.12009|IPF7535	Predicted ORF in Assemblies 19, 20 and 21; macrophage-downregulated gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	391076	392894	-	orf19.4533	391076	392894	1	392894	391076	392780	391263		orf19.12008|IPF22714.1|IPF7533.2|Contig4-2751_0002|orf6.6679|CA4192|CaO19.12008|CaO19.4533|IPF7533	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	393089	394481	+	orf19.4532	393089	394481	1	393089	394481	393312	394376		orf19.12007|IPF7531.2|IPF28355.1|Contig4-2751_0004|orf6.6678|CA4191|CaO19.4532|IPF7531	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	395499	399427	+	orf19.4531	395499	399427	1	395499	399427	395603	399427		orf19.12006|IPF7530.2|IPF28363.1|Contig4-2751_0006|Contig4-2751_0007|orf6.6677|CA4190|CaO19.4531|IPF7530	Putative PDR-subfamily ABC transporter [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr1	400555	402162	+	orf19.4530.1	400555	402162	2	400555|400924	400637|402162	400609	401995		IPF22717.1|IPF7527.2|Contig4-2751_0008|CA4189|IPF7527	ORF Predicted by Annotation Working Group; regulated by Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	402105	402829	-	orf19.4529	402105	402829	1	402829	402105	402787	402281		orf19.12004|IPF7525|IPF22725.1|IPF7525.1|Contig4-2751_0010|orf6.6675|CA4188|CaO19.12004|CaO19.4529	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	402967	403729	-	orf19.4528	402967	403729	1	403729	402967	403707	403162		orf19.12003|IPF7524.1|IPF18665.2|Contig4-2751_0011|orf6.6674|CA4187|CaO19.12003|CaO19.4528|IPF7524	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	404176	405404	+	ntar_35	404176	405404	1	404176	405404	404910	405035			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	405294	405736	+	ntar_36	405294	405736	1	405294	405736	405294	405512			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	406323	407278	-	ntar_37	406323	407278	1	407278	406323					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	406691	408328	+	orf19.4527	406691	408328	1	406691	408328	406691	408328	HGT1	orf19.12002|HGT11|IPF7518.2|IPF9983.2|Contig4-2702_0004|orf6.3044|orf6.6673|CA1506|CaO19.4527	High-affinity glucose transporter, member of major facilitator superfamily; transcription induced by progesterone and by drugs including chloramphenicol and benomyl; likely essential for growth, based on an insertional mutagenesis strategy [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	407702	408212	-	ntar_38	407702	408212	1	408212	407702	408112	407822			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	408596	409058	+	ntar_39	408596	409058	1	408596	409058					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	411358	412386	+	orf19.4526	411358	412386	1	411358	412386	411358	412386	HSP30	orf19.12001|IPF22718.1|IPF9978.2|Contig4-2702_0008|Contig4-2702_0009|orf6.3045|CA1507|CaO19.12001|CaO19.4526	Protein described as similar to heat shock protein; fluconazole-downregulated; amphotericin B induced [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	412836	414053	+	orf19.4525	412836	414053	1	412836	414053	412836	413840		orf19.12000|IPF22719.1|IPF9977.2|Contig4-2702_0011|orf6.3046|CA1508|CaO19.12000|CaO19.4525|IPF9977	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	413963	416372	-	orf19.4524	413963	416372	2	416372|416158	416237|413963	416295	414112		ZCF24|orf19.11999|IPF22709.1|IPF19920.1|Contig4-2702_0012|orf6.3047|CA1509|IPF19920|IPF19920.3	Predicted zinc-finger protein of unknown function; caspofungin induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	416354	417696	+	orf19.4523	416354	417696	1	416354	417696	416475	417098		orf19.11998|IPF22723.1|IPF9973.2|Contig4-2702_0013|orf6.3048|CA1510|CaO19.11998|CaO19.4523|IPF9973	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	417015	417767	-	orf19.4522	417015	417767	1	417767	417015	417694	417101		orf19.11997|IPF22727.1|IPF9972.2|orf6.3049|CA1511|CaO19.4522|CaO19.11997|IPF9972.3eoc	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	417954	420645	-	orf19.3661	417954	420645	1	420645	417954	420516	418042		orf19.11145|IPF23582.1|IPF11332.3|Contig4-2575_0009|orf6.135|orf6.2135|CA0927|UBP16|CaO19.3661|IPF11332|IPF11332.2	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	421076	424102	-	orf19.3663	421076	424102	1	424102	421076	423870	421288	PHO91	orf19.11147|IPF23580.1|IPF11335.1|Contig4-2575_0007|orf6.2133|CA0926|CaO19.11147|CaO19.3663|IPF11335	Putative low-affinity phosphate transporter; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	425712	427097	+	orf19.3663.1	425712	427097	2	425712|426401	426036|427097	426009	426639			Predicted ORF in Assembly 20 and 21; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	427823	428892	+	orf19.3664	427823	428892	1	427823	428892	427866	428861	HSP31	orf19.11148|IPF12039.2|IPF11340.3|Contig4-1615_0002|Contig4-1615_0004|orf6.6475|CA4034|CaO19.3664	Protein repressed during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	429338	430814	+	orf19.3665	429338	430814	1	429338	430814	429394	430533		orf19.11149|IPF23602.1|IPF12040.2|Contig4-3059_0003|orf6.6476|CA4035|SET6|CaO19.3665|CaO19.11149|IPF12040	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	430048	432058	-	orf19.3666	430048	432058	1	432058	430048	432017	430530		orf19.11150|IPF23597.1|IPF12042.2|Contig4-3059_0004|orf6.6477|CA4036|CaO19.3666|CaO19.11150|IPF12042	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	432227	434005	+	orf19.3667	432227	434005	1	432227	434005	432248	433864		orf19.11151|IPF23592.1|IPF12044.2|Contig4-3059_0005|orf6.6478|CA4037|CaO19.3667|KIP99|CaO19.11151|KIP31	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	434337	436145	-	orf19.3668	434337	436145	1	436145	434337	436072	434435	HGT2	orf19.11152|RGT2|IPF23590.1|IPF5315.2|Contig4-3059_0006|orf6.6479|CA4038|CaO19.3668|CaO19.11152|HGT12	Putative glucose transporter of the major facilitator superfamily; the C. albicans glucose transporter family comprises 20 members; 12 probable membrane-spanning segments; expressed in rich medium with 2% glucose [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	434651	435061	+	ntar_40	434651	435061	1	434651	435061	434651	434983			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	435499	435957	+	ntar_41	435499	435957	1	435499	435957					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	442376	444335	-	orf19.3669	442376	444335	1	444335	442376	444259	442472	SHA3	orf19.11153|SKS1|IPF23589.1|IPF5304.2|Contig4-3059_0011|orf6.6480|CA4039|CaO19.11153|CaO19.3669	Protein similar to S. cerevisiae Sha3p, which is a serine/threonine kinase involved in glucose transport; transposon mutation affects filamentous growth; fluconazole-induced; ketoconazole-repressed; induced in response to alpha pheromone [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	446677	447274	+	ntar_42	446677	447274	1	446677	447274	446677	446904			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	447406	447641	+	ntar_43	447406	447641	1	447406	447641					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	448869	451094	-	orf19.3670	448869	451094	1	451094	448869	450824	449277	GAL1	orf19.11154|IPF23594.1|IPF5296.2|Contig4-3059_0016|orf6.6481|CA4040|CaO19.11154|CaO19.3670	Galactokinase; transcription regulated by galactose; transcription regulated by Mig1p and Tup1p; not required for systemic mouse virulence; farnesol-downregulated in biofilm; fluconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	451304	451648	-	orf19.3671	451304	451648	1	451648	451304	451648	451304		orf19.11155|IPF23619.1|IPF28685.1|orf6.6482|CaO19.3671|CaO19.11155	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	451984	454259	+	orf19.3672	451984	454259	1	451984	454259	452186	454213	GAL10	orf19.11156|IPF23585.1|IPF5294.2|Contig4-3059_0020|orf6.6483|CA4041|CaO19.3672|CaO19.11156	UDP-glucose 4-epimerase, required for galactose utilization; mutant shows cell wall defects and increased filamentation; fluconazole-induced; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	454395	455266	+	orf19.3673	454395	455266	1	454395	455266	454418	454924		orf19.11157|IPF23609.1|IPF5292.1|Contig4-3059_0021|orf6.6484|CA4042|TRS23|CaO19.11157|CaO19.3673	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	454883	455875	-	orf19.3674	454883	455875	1	455875	454883	455845	454883	GAL102	orf19.11158|IPF23603.1|IPF5291.1|Contig4-3059_0023|orf6.6485|CA4043|TGD99|CaO19.3674|CaO19.11158|IPF5291	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr1	456465	458032	+	orf19.3675	456465	458032	1	456465	458032	456773	457933	GAL7	orf19.11159|IPF23601.1|IPF9203.2|Contig4-2775_0014|orf6.6486|CA4044|CaO19.11159|CaO19.3675	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	458358	459438	+	orf19.3676	458358	459438	1	458358	459438	458388	459326	ABP140	orf19.11160|IPF23604.1|IPF9204.1|Contig4-2775_0013|orf6.6487|CA4045|CaO19.3676|CaO19.11160	Protein similar to S. cerevisiae actin-binding protein Abp140p; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	459212	460327	-	orf19.3677	459212	460327	1	460327	459212	460152	459316		orf19.11161|IPF23607.1|IPF9205.2|Contig4-2775_0011|orf6.6488|CA4046|CaO19.11161|ATG5|CaO19.3677|IPF9205	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	460783	463066	+	orf19.3678	460783	463066	1	460783	463066	461092	462807		orf19.11162|IPF9206|IPF23591.1|IPF9206.2|Contig4-2775_0010|orf6.6489|CA4047|CaO19.11162|CaO19.3678	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	462506	463924	-	orf19.3679	462506	463924	1	463924	462506	463884	462874		orf19.11163|IPF9207.2|IPF28682.1|Contig4-2775_0009|orf6.6490|CA4048|CaO19.3679|CaO19.11163|IPF9207	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	465099	468016	+	orf19.3680	465099	468016	1	465099	468016	465662	467674	7-Sep	orf19.11164|IPF23586.1|IPF9210.2|Contig4-2775_0002|orf6.875|CA6210|SHS1|CaO19.11164|CaO19.3680	Septin, required for wild-type invasive growth in vitro but not required for virulence in a mouse model of systemic infection; localizes to hyphal septum or bud neck; Asn-rich; aberrant gel mobility [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	468557	468790	+	ntar_44	468557	468790	1	468557	468790					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	469048	472041	+	orf19.3681	469048	472041	1	469048	472041	469144	471771		orf19.11165|IPF10376.1|IPF28677.1|Contig4-2750_0016|orf6.2498|CA1147|CaO19.11165|KAP95|CaO19.3681	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	472250	472619	-	ntar_45	472250	472619	1	472619	472250					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	472740	474071	+	ntar_46	472740	474071	1	472740	474071	473172	473447			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	472850	473260	-	ntar_47	472850	473260	1	473260	472850					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	473363	474023	-	ntar_48	473363	474023	1	474023	473363	473989	473867			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	474174	475920	+	orf19.3682	474174	475920	1	474174	475920	474954	475679	CWH8	orf19.11166|IPF23608.1|IPF10381.2|Contig4-2750_0005|orf6.2497|CA1146|CaO19.11166|CAX4|CaO19.3682	Putative dolichyl pyrophosphate (Dol-P-P) phosphatase; ketoconazole-induced; expression is increased in a fluconazole-resistant isolate; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	475769	477186	-	orf19.3683	475769	477186	1	477186	475769	477070	475931		orf19.11167|IPF10382.2|IPF18541.2|Contig4-2750_0004|orf6.2496|orf6.3883|CA1145|GCS1|CaO19.3683	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	477313	478163	+	ntar_49	477313	478163	1	477313	478163					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	477321	478239	-	orf19.3684	477321	478239	1	478239	477321	478218	477340		orf19.11168|IPF19650.1|IPF18542.1|IPF19649.1|Contig4-2750_0002|orf6.2495|orf6.3882|CA1144|SPS19|SPS19.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	478505	481653	-	orf19.3685	478505	481653	1	481653	478505	481603	478661	PSY2	orf19.11169|IPF18751.2|IPF13744.2|orf6.2494|orf6.3881|CA2114|CaO19.3685|IPF13744	Predicted ORF in Assemblies 19, 20 and 21; macrophage-induced gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	482242	483625	-	orf19.3686	482242	483625	1	483625	482242	483625	482414		orf19.11170|IPF23600.1|IPF13746.2|Contig4-2096_0001|orf6.3880|CA2113|CaO19.11170|ATP12|CaO19.3686	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	483580	484241	+	orf19.3687	483580	484241	1	483580	484241	483733	484098		orf19.11171|IPF23613.1|IPF13747.2|Contig4-2096_0002|orf6.3879|CA2112|CaO19.11171|PFD1|CaO19.3687	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	483923	484638	-	orf19.3688	483923	484638	1	484638	483923	484574	484209		orf19.11172|IPF23616.1|IPF13748.2|Contig4-2096_0003|orf6.3878|CA2111|CaO19.3688|IPF13748	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	484733	486642	-	orf19.3689	484733	486642	1	486642	484733	486512	484881		orf19.11173|orf19.11174|IPF23610.1|IPF23605.1|IPF18544.1|IPF13749.2|Contig4-2096_0004|Contig4-2096_0006|Contig4-2582_0008|orf6.3877|orf6.3876|CA2110|CA2109|orf19.3690|IPF13749.3f	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	487070	488344	-	orf19.3690.2	487070	488344	2	488344|487747	488214|487070	488232	487383		IPF23615.1|IPF10719.1|CA2108|RPL26A.3f|RPL26A.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	488546	489165	-	tr(ccg)1	488546	489165	2	489165|488717	488749|488546	489158	488936		tR(CCG)1.2	tRNA-Arg predicted by tRNAscan-SE [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	489308	490466	+	orf19.3691	489308	490466	1	489308	490466	489369	490175		orf19.11175|IPF23606.1|IPF10716.1|Contig4-2582_0002|orf6.3875|CA2107|FMP17|CaO19.11175|CaO19.3691|IPF10716	Predicted ORF in Assemblies 19, 20 and 21; ketoconazole-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	490289	492214	-	orf19.3693	490289	492214	1	492214	490289	492214	490289	PGA5	orf19.11177|IPF23587.1|IPF10714.2|Contig4-2582_0001|orf6.3873|GAS12|CA2106|CaO19.11177|CaO19.3693|IPF10714	[NOT TRANSCRIBED?] Putative GPI-anchored protein; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	492498	496408	-	orf19.3694	492498	496408	1	496408	492498	496257	492625		orf19.11178|IPF23618.1|IPF10711.2|Contig4-1599_0004|Contig4-2582_0009|orf6.3872|CA2105|CaO19.3694|CaO19.11178|IPF10711	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	497860	499098	-	orf19.2925	497860	499098	1	499098	497860	499071	498391		orf19.10442|IPF24343.1|IPF15237.1|Contig4-2057_0002|orf6.1561|CA0561|CIN4|CaO19.10442|CaO19.2925	Predicted ORF in Assemblies 19, 20 and 21 (see Locus History Note for Assembly 19 correction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	499153	501955	+	orf19.2926	499153	501955	1	499153	501955	499258	501750		orf19.10443|IPF24250.1|IPF15236.2|Contig4-2057_0003|Contig4-2057_0005|Contig4-2249_0007|orf6.1562|CA0562|CaO19.10443|CaO19.2926|PSO2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	501945	503666	-	orf19.2927	501945	503666	1	503666	501945	503425	502091	MNN11	orf19.10444|IPF18555.2|IPF14216.2|Contig4-2249_0006|orf6.1563|CA0563|CaO19.2927	Protein with similarity to mannosyltransferases [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	504038	505444	-	orf19.2928	504038	505444	1	505444	504038	505263	504190		orf19.10445|IPF14219.2|IPF18940.2|Contig4-2249_0005|orf6.1564|orf6.3784|CA0564|CaO19.2928|IPF14219|CA2042	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	505502	505759	+	ntar_50	505502	505759	1	505502	505759	505502	505660			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	505711	513014	-	orf19.2929	505711	513014	2	513014|511700	512883|505711	511700	506007	GSC1	orf19.10446|FKS1|IPF24355.1|IPF10681.2|GSL21|Contig4-2249_0002|orf6.3785|GSL2|CA2043|CaO19.2929|CaO19.10446	Subunit of beta-1,3-glucan synthase; essential; gsc1 allele determines resistance/sensitivity to echinocandin antifungals; 16 predicted membrane-spanning regions; mRNA abundance declines after yeast-to-hyphal transition; fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	514736	514981	+	ntar_51	514736	514981	1	514736	514981					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	515107	515451	+	ntar_52	515107	515451	1	515107	515451	515107	515274			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	515619	517792	-	orf19.2930	515619	517792	1	517792	515619	517581	515635		orf19.10447|IPF10668.2|IPF18514.2|Contig4-2150_0003|orf6.3786|orf6.3995|CA2044|CaO19.2930|IPF10668	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	518120	519369	-	orf19.2933	518120	519369	1	519369	518120	519223	518222		orf19.10450|IPF10665.2|IPF8107.2|Contig4-2841_0001|Contig4-2841_0002|orf6.3789|orf6.3997|CA2045|CaO19.2933|IPF8107	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	519478	520051	+	ntar_53	519478	520051	1	519478	520051					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	519885	520682	-	orf19.2934	519885	520682	1	520682	519885	520640	520110		orf19.10451|IPF8108.2|IPF28911.1|Contig4-2841_0004|orf6.3790|orf6.3998|CA2046|BUD20|CaO19.2934|IPF8108	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	520935	522238	+	orf19.2935	520935	522238	2	520935|521337	520989|522238	521342	522004	RPL10	orf19.10452|IPF8109.2|IPF28907.1|Contig4-2841_0005|orf6.3791|orf6.3999|CA2047|CaO19.2935	Putative ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases downregulated upon phagocytosis by murine macrophage; transcription regulated upon yeast-hyphal switch; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	522422	523459	+	orf19.2936	522422	523459	1	522422	523459	522669	523139		orf19.10453|IPF18554.2|IPF8110.2|Contig4-2841_0007|orf6.4000|CA2197|CaO19.10453|CaO19.2936|IPF8110	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	523880	524995	+	orf19.2937	523880	524995	1	523880	524995	524030	524788	PMM1	orf19.10454|IPF24340.1|IPF8112.1|Contig4-2841_0009|orf6.4001|CA2198|CaO19.10454|CaO19.2937	Phosphomannomutase; enzyme of O- and N-linked mannosylation; interconverts mannose-6-phosphate and mannose-l-phosphate; functional homolog of S. cerevisiae Sec53p; antigenic during murine systemic infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	524805	526953	-	orf19.2938	524805	526953	1	526953	524805	526916	524895		orf19.10455|IPF8113|IPF24263.1|IPF8113.2|Contig4-2841_0010|orf6.4002|CA2199|CaO19.2938|FMP25|CaO19.10455	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	527105	527898	+	orf19.2939	527105	527898	1	527105	527898	527154	527780		orf19.10456|IPF24347.1|IPF8114.2|Contig4-2841_0011|orf6.4003|CA2200|CaO19.10456|FMP32|CaO19.2939|IPF8114	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	528014	528866	+	orf19.2940	528014	528866	1	528014	528866	528083	528814		orf19.10457|IPF24341.1|IPF19943.1|Contig4-2841_0013|orf6.4004|CA2201|BOS1|CaO19.10457|CaO19.2940	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	530041	532028	+	orf19.2941	530041	532028	1	530041	532028	530226	531962	SCW4	orf19.10458|IPF24282.1|IPF8122.1|Contig4-2841_0015|orf6.4005|CA2202|CMP66|CaO19.10458|CaO19.2941	Putative cell wall protein; exogenously expressed protein is a substrate for Kex2p processing in vitro; expression is regulated upon white-opaque switching; alkaline downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	532146	532324	+	ntar_54	532146	532324	1	532146	532324					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	532269	534323	-	orf19.2942	532269	534323	1	534323	532269	534217	532457	DIP5	orf19.10459|orf19.10460|IPF24319.1|IPF24337.1|IPF8123.2|IPF10236.2|DIP51|Contig4-2841_0016|orf6.4006|orf6.4007|CA2203|CA2204|orf19.2943|DIP52|DIP51.3f	Putative permease for dicarboxylic amino acids; mutation confers hypersensitivity to toxic ergosterol analog; transcriptionally induced upon phagocytosis by macrophage; Gcn4p-regulated; upregulated by Rim101p at pH 8 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	536181	536491	-	ntar_55	536181	536491	1	536491	536181					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	536589	536661	-	tr(ucu)4	536589	536661	1	536661	536589				tR(UCU)4.2	tRNA-Arg predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	536985	537284	+	orf19.2943.5	536985	537284	1	536985	537284	536985	537284		IPF10241.3	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	537126	539136	-	orf19.2945	537126	539136	1	539136	537126	539136	537442	PUT4	orf19.10462|IPF24286.1|IPF10243.2|Contig4-2682_0007|orf6.6671|CA4186|CaO19.10462|CaO19.2945	Putative proline permease; fungal-specific (no human or murine homolog); repressed during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	537849	538389	+	ntar_56	537849	538389	1	537849	538389					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	538653	539002	+	ntar_57	538653	539002	1	538653	539002	538683	538817			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	539047	539470	+	ntar_58	539047	539470	1	539047	539470	539047	539229			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	540058	541569	+	orf19.2946	540058	541569	1	540058	541569	540058	541569	HNM4	orf19.10463|IPF24296.1|IPF10246.2|Contig4-2682_0005|orf6.6670|CA4185|CaO19.10463|CaO19.2946	Putative choline permease; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	541584	542739	-	orf19.2947	541584	542739	1	542739	541584	542657	541779	SNZ1	orf19.10464|IPF24330.1|IPF10248.2|Contig4-2682_0003|orf6.6669|CA4184|SNZ99|CaO19.2947|CaO19.10464	Detected in stationary phase cultures; soluble in hyphae; induced on yeast to hyphal switch, in response to 3-aminotriazole, or in azole-resistant strain overexpressing MDR1; regulated by Gcn4p, macrophage; no human/murine homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	543965	544968	+	orf19.2948	543965	544968	1	543965	544968	544113	544862	SNO1	orf19.10465|IPF4408.2|IPF28909.1|Contig4-2696_0001|orf6.6668|CA4183|CaO19.2948	Protein of unknown function expressed during stationary phase; transcription is regulated by Tup1p, Efg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	545055	549479	+	orf19.2949	545055	549479	1	545055	549479	545064	549452		orf19.10466|IPF19797.1|IPF28917.1|Contig4-2696_0005|orf6.6667|CA4182|CaO19.10466|IML1|CaO19.2949|IPF19797	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	549413	550678	-	orf19.2951	549413	550678	1	550678	549413	550630	549551	HOM6	orf19.10468|IPF24318.1|IPF4417.2|Contig4-2696_0009|orf6.6665|CA4181|CaO19.2951|CaO19.10468	Protein described as homoserine dehydrogenase; regulated by Gcn4p; induced in response to amino acid starvation (3-aminotriazole treatment); macrophage-induced protein; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	550897	552485	-	orf19.2952	550897	552485	1	552485	550897	552433	550994	EXG2	orf19.10469|orf6.6664|IPF24292.1|IPF4419.1|Contig4-2696_0012|Contig4-2696_0013|Contig4-2696_0015|CA4180|CaO19.2952|CaO19.10469	GPI-anchored cell wall protein, similar to S. cerevisiae Exg2p, which is an exo-1,3-beta-glucosidase; predicted Kex2p substrate; induced during cell wall regeneration [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	552567	553516	-	orf19.2953	552567	553516	1	553516	552567	553430	552915		orf19.10470|IPF24356.1|IPF4420.1|Contig4-2696_0016|orf6.6663|CA4179|TOM20|CaO19.2953|CaO19.10470	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	553770	554598	+	orf19.2954	553770	554598	1	553770	554598	553815	554417		orf19.10471|IPF24348.1|IPF4421.2|Contig4-2696_0017|orf6.6662|CA4178|CaO19.2954|CaO19.10471|IPF4421	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	554499	555520	-	orf19.2956	554499	555520	1	555520	554499	555461	554634	MGM101	orf19.10473|IPF24328.1|IPF4423.1|Contig4-2696_0018|orf6.6660|CA4177|CaO19.2956|CaO19.10473	Putative mitochondrial genome maintenance protein; fungal-specific (no human or murine homolog); mutation confers hypersensitivity to tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	555732	558158	-	orf19.2957	555732	558158	1	558158	555732	558158	555732		orf19.10474|IPF24251.1|IPF4425.2|orf6.6659|MNN4|CA4176|CaO19.2957|MNN43|CaO19.10474|IFX2|IPF4425.repeat1	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	558798	561737	-	orf19.2958	558798	561737	1	561737	558798	561509	558981		orf19.10475|IPF24247.1|IPF4427.2|Contig4-2873_0015|orf6.6658|CA4175|CaO19.10475|MNN44|CaO19.2958|IFX1|IPF4425.repeat2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	562417	562719	-	orf19.2959	562417	562719	1	562719	562417	562719	562417		orf19.10476|orf6.6657|CaO19.2959|CaO19.10476	Predicted ORF from Assembly 19; removed from Assembly 20; subsequently reinstated in Assembly 21 based on comparative genome analysis [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	563797	564120	+	ntar_59	563797	564120	1	563797	564120					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	564086	564830	-	orf19.2959.1	564086	564830	1	564830	564086	564488	564315		IPF24404.1|IPF4430.1|CA4174|IPF4430|IPF4119.5	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	565057	565230	-	ntar_60	565057	565230	1	565230	565057					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	565673	567305	+	orf19.2960	565673	567305	1	565673	567305	565743	567233	FRS2	orf19.10477|IPF24297.1|IPF4431.1|Contig4-2873_0010|orf6.6656|CA4173|CaO19.10477|CaO19.2960	Putative tRNA-Phe synthetase; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	567452	569143	+	orf19.2961	567452	569143	1	567452	569143	567502	568695		orf19.10478|IPF24305.1|IPF4432.2|Contig4-2873_0007|orf6.6655|CA4172|CaO19.2961|CaO19.10478|IPF4432	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	574140	575536	+	orf19.2962	574140	575536	1	574140	575536	574280	575167		orf19.10479|IPF24329.1|IPF7785.1|Contig4-2716_0004|orf6.6654|CA4171|CaO19.10479|CaO19.2962|IPF7785	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	574623	576483	-	orf19.2963	574623	576483	1	576483	574623	576458	575538		orf19.10480|IPF24327.1|IPF7784.2|Contig4-2716_0005|orf6.6653|CA4170|CaO19.10480|CaO19.2963|IPF7784	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	576630	579126	-	orf19.2964	576630	579126	1	579126	576630	579105	576718		orf19.10481|IPF24254.1|IPF7783.2|Contig4-2716_0006|Contig4-2716_0007|orf6.6652|CA4169|CaO19.2964|RSC2|CaO19.10481	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	579765	581023	+	orf19.2965	579765	581023	1	579765	581023	579810	580862		orf19.10482|IPF24314.1|IPF7781.2|Contig4-2716_0008|orf6.6651|CA4168|CaO19.10482|CaO19.2965|IPF7781	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	581084	581678	+	orf19.2965.1	581084	581678	2	581084|581519	581413|581678	581272	581568			Predicted ORF in Assembly 20 and 21; similar to human SERF2; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	581819	582847	+	orf19.2966	581819	582847	1	581819	582847	581904	582662		orf19.10483|IPF24336.1|IPF7778.2|Contig4-2061_0002|orf6.6650|CA4167|CaO19.10483|CaO19.2966|IPF7778	Predicted ORF in Assemblies 19, 20 and 21; clade-associated gene expression; farnesol-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	582904	584139	+	orf19.2967	582904	584139	1	582904	584139	582959	584011	TIF34	orf19.10484|IPF24320.1|IPF7775.2|Contig4-2061_0003|orf6.6649|CA4166|CaO19.2967|CaO19.10484	Putative translation initiation factor; mutation confers hypersensitivity to roridin A and verrucarin A; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	584392	585135	+	orf19.2968	584392	585135	1	584392	585135	584392	584994		IPF7774.2|IPF28910.1|Contig4-2061_0004|orf6.2121|CA4165|CaO19.2968|IPF7774|orf6.6648|IPF7774.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	585890	588603	+	orf19.2969	585890	588603	1	585890	588603	585974	588532	RAD16	orf19.10486|IPF24246.1|IPF15502.2|orf6.2120|CA0917|CaO19.10486|CaO19.2969	Protein similar to S. cerevisiae Rad16p; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	587979	588541	-	ntar_61	587979	588541	1	588541	587979	588457	588335			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	588912	593357	+	orf19.2970	588912	593357	1	588912	593357	588960	593174	LYS2	orf19.10487|IPF17598.2|IPF19710.1|Contig4-1985_0002|orf6.2119|orf6.240|orf6.5719|CA0916|CaO19.2970	Large subunit of heterodimeric alpha-aminoadipate reductase; enzyme of lysine biosynthesis; contains predicted binding sites for AMP and alpha-aminoadipate; feedback inhibited by lysine or thialysine; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	593636	595690	+	orf19.2971	593636	595690	1	593636	595690	593755	595524		orf19.10488|IPF7316.2|IPF18834.2|Contig4-1985_0001|orf6.5718|CA3451|CaO19.2971|IPF7316	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	595793	596505	+	ntar_62	595793	596505	1	595793	596505					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	595941	596604	-	ntar_63	595941	596604	1	596604	595941	596256	596134			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	597733	600066	+	orf19.2972	597733	600066	1	597733	600066	598075	599790	PDE2	orf19.10489|IPF24285.1|IPF7318.2|Contig4-2816_0009|Contig4-2816_0010|orf6.5717|CA3450|CaO19.10489|CaO19.2972	Cyclic nucleotide phosphodiesterase, high affinity; role in moderating signaling via cAMP; required for wild-type virulence, hyphal growth, switching, and cell wall, but not for pseudohyphal growth; expressed shortly after hyphal induction [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	599883	600108	-	ntar_64	599883	600108	1	600108	599883					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	600575	602988	+	orf19.2973	600575	602988	1	600575	602988	600742	602781		orf19.10490|IPF24265.1|IPF7320.2|Contig4-2816_0007|orf6.5716|CA3449|CaO19.2973|CaO19.10490|IPF7320	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	602764	603874	-	orf19.2974	602764	603874	1	603874	602764	603791	603189	YKT6	orf19.10491|IPF24350.1|IPF7321.1|Contig4-2816_0005|orf6.5715|CA3448|CaO19.10491|CaO19.2974	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	604482	605695	+	orf19.2975	604482	605695	1	604482	605695	604735	605601	YPT7	orf19.10492|IPF24331.1|IPF7322.2|Contig4-2816_0003|orf6.5714|RAB7|CA3447|YPT71|CaO19.10492|CaO19.2975|YPT70	Protein of YPT/RAB family; induced during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	605680	606761	-	orf19.2977	605680	606761	1	606761	605680	606542	605784		orf19.10494|IPF24332.1|IPF7324.2|Contig4-2816_0002|orf6.5712|CA3446|CaO19.10494|CaO19.2977|IPF7324	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	607044	607672	-	orf19.2978	607044	607672	1	607672	607044	607584	607210		orf19.10495|IPF24393.1|IPF7325.1|Contig4-2816_0001|orf6.5711|CA3445|CaO19.2978|CaO19.10495|IPF7325	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	607869	610080	-	orf19.2980	607869	610080	1	610080	607869	610046	607869		orf19.10497|IPF24259.1|IPF11323.2|Contig4-2816_0011|orf6.5709|CA3444|CaO19.10497|TIP39|CaO19.2980|IPF11323	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	607870	608365	+	ntar_65	607870	608365	1	607870	608365					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	610168	611716	-	orf19.2982	610168	611716	1	611716	610168	611697	610267		orf19.10499|IPF24299.1|IPF11324.1|Contig4-2573_0011|orf6.5707|CA3443|CaO19.2982|ATG17|CaO19.10499|IPF11324	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	611964	613216	+	orf19.2983	611964	613216	1	611964	613216	611996	613108	CDC73	orf19.10500|IPF24313.1|IPF11326.2|Contig4-2573_0010|orf6.5706|CA3442|CaO19.2983|CaO19.10500|IPF11326	Protein similar to S. cerevisiae Cdc73p, which is a transcription elongation factor; cdc73 kap114 double transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	613123	614586	-	orf19.2984	613123	614586	1	614586	613123	614535	613168		orf19.10501|IPF24303.1|IPF11327.1|Contig4-2573_0009|orf6.5705|CA3441|CaO19.2984|MST1|CaO19.10501	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	614674	615384	-	orf19.2985	614674	615384	1	615384	614674	615281	614763		orf19.10502|IPF24360.1|IPF11328.1|Contig4-2573_0007|orf6.5704|CA3440|CaO19.10502|CaO19.2985|IPF11328	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	614761	616299	+	orf19.2986	614761	616299	1	614761	616299	615529	615906		orf19.10503|IPF24392.1|IPF11329.2|Contig4-2573_0005|orf6.5703|CA3439|CaO19.10503|CaO19.2986|IPF11329	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	615875	617943	-	orf19.2987	615875	617943	1	617943	615875	617788	616001		orf19.10504|IPF24281.1|IPF11330.2|Contig4-2573_0003|Contig4-2573_0004|orf6.5702|CA3438|MDM31|CaO19.10504|CaO19.2987|IPF11330	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	618386	619840	+	orf19.2988	618386	619840	1	618386	619840	618441	619706		orf19.10505|IPF15925.2|IPF28906.1|Contig4-2573_0001|orf6.5701|CA3437|CaO19.10505|CaO19.2988|IPF15925	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	620076	621432	+	orf19.2989	620076	621432	1	620076	621432	620165	621193		orf19.10506|IPF15924.2|IPF16795.1|Contig4-2184_0001|orf6.1981|orf6.5700|CA0821|CaO19.2989|IPF16795	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	622031	624107	-	orf19.2990	622031	624107	1	624107	622031	623597	622281	XOG1	orf19.10507|EXG|EXG1|IPF24307.1|IPF14073.2|Contig4-2184_0004|orf6.1982|CA0822|CaO19.2990	Exo-1,3-beta-glucanase, major exoglucanase; member of family 5 glycosyl hydrolases; affects sensitivity to inhibitors of chitin and glucan synthesis; not required for yeast-to-hyphal transition or for virulence in mouse systemic infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	628105	629865	+	orf19.2991	628105	629865	1	628105	629865	628105	629865	HOL1	orf19.10508|IPF24277.1|IPF5592.2|Contig4-3020_0013|orf6.4874|CA2820|HOL2|CaO19.2991|CaO19.10508	Predicted ORF in Assemblies 19, 20 and 21; transcription is regulated by Nrg1p; macrophage/pseudohyphal-repressed; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	630176	630824	+	orf19.2992	630176	630824	1	630176	630824	630252	630572	RPP1A	orf19.10509|RP1A|CARP1A|RPA1|IPF24399.1|IPF5594.2|RPP1A-1|Contig4-3020_0012|orf6.4873|CA2819|CaO19.2992|CaO19.10509	Conserved acidic ribosomal protein, likely to be involved in regulation of translation elongation; interacts with Rpp2Bp; one of four similar C. albicans ribosomal proteins (Rpp1Ap, Rpp1Bp, Rpp2Ap, Rpp2Bp) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	630947	631742	-	orf19.2994	630947	631742	1	631742	630947	631681	631073	RPL13	orf19.10511|IPF24346.1|IPF5596.2|RPL13A|Contig4-3020_0010|orf6.4871|CA2818|CaO19.2994|CaO19.10511	Protein described as ribosomal subunit; antigenic during murine systemic infection; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	632063	633483	+	orf19.2994.1	632063	633483	2	632063|632490	632162|633483	632142	632897	RPS16A	IPF24384.1|IPF5598.2|Contig4-3020_0009|CA2817|RPS16B|RPS16|RPS16.3	Macrophage/pseudohyphal-induced after 16 h [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	633651	634674	+	orf19.2995	633651	634674	1	633651	634674	633825	634583		orf19.10512|IPF24338.1|IPF5601.2|Contig4-3020_0008|orf6.4870|CA2816|CaO19.2995|CaO19.10512|IPF5601	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	634144	634862	-	ntar_66	634144	634862	1	634862	634144	634613	634359			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	635050	638390	+	orf19.2996	635050	638390	1	635050	638390	635166	638321		orf19.10513|IPF24407.1|IPF5604.2|Contig4-3020_0006|orf6.4869|CA2815|CaO19.10513|CaO19.2996|IPF5604	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	638227	639076	-	orf19.2998	638227	639076	1	639076	638227	639028	638399	TSR2	orf19.10515|IPF24349.1|IPF5607.1|Contig4-3020_0003|orf6.4867|CA2814|CaO19.2998|CaO19.10515|IPF5607	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	639128	641709	-	orf19.3000	639128	641709	1	641709	639128	641622	639205	ORC1	orf19.10518|IPF5612.2|IPF5345.3|Contig4-3020_0001|orf6.4864|orf6.5289|CA2813|CaO19.3000	Predicted ORF in Assemblies 19, 20 and 21; essential for viability; similar to S. cerevisiae Orc1p origin recognition complex subunit [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	641830	642800	-	orf19.3001	641830	642800	2	642800|642592	642671|641830	642705	642025	TEM1	orf19.10519|IPF5346.1|IPF5613.1|Contig4-3096_0001|orf6.4863|orf6.5288|CA2812|SPG1|CaO19.3001	Protein similar to S. cerevisiae Tem1p, which is a GTPase involved in termination of the M phase of the cell cycle; induced under Cdc5p depletion [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	643244	644221	+	orf19.3002	643244	644221	1	643244	644221	643289	644059	RPS1	orf19.10520|RPS10|RP10|IPF5347.2|IPF28908.1|RPS1A|Contig4-3096_0003|orf6.4862|orf6.5287|CA2811|CaO19.3002|RPS3A	Probable ortholog of S. cerevisiae ribosomal protein Rp10 (Rps1Ap and Rps1Bp), elicits a host antibody response during infection; transcription is induced during active growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	645044	649787	+	orf19.3003	645044	649787	2	645044|645376	645182|649787	645168	649614		orf19.10521|IPF24377.1|IPF5353.2|Contig4-3096_0004|Contig4-3096_0005|orf6.5286|CA3124|IPF5353|IPF5353.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	650079	651332	+	orf19.3003.1	650079	651332	2	650079|650503	650140|651332	650129	651021	RPL6	IPF24361.1|IPF5354.2|Contig4-3096_0006|CA3123|RPL6.3	Protein similar to S. cerevisiae Rpl6p, which is a ribosomal subunit; transposon mutation affects filamentous growth; translation-related genes are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	651883	653372	+	orf19.3004	651883	653372	1	651883	653372	651967	653199		orf19.10522|IPF24308.1|IPF5356.2|Contig4-3096_0008|orf6.5285|CA3122|CaO19.10522|CaO19.3004|IPF5356	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	653267	655492	-	orf19.3006	653267	655492	1	655492	653267	655266	653512		orf19.10524|IPF24284.1|IPF5357.2|Contig4-3096_0010|orf6.5283|CA3121|GGA2|CaO19.10524|CaO19.3006|GGA1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	655725	656483	+	orf19.3007	655725	656483	1	655725	656483	655863	656339		orf19.10525|IPF24369.1|IPF5358.2|Contig4-3096_0014|orf6.5282|CA3120|CaO19.10525|CaO19.3007|IPF5358	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	656333	657378	-	orf19.3007.2	656333	657378	2	657378|657140	657231|656333	657266	656511		IPF24352.1|IPF5360.1|Contig4-3096_0015|CA3119|IPF5360|IPF5360.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	657452	658730	-	orf19.3008	657452	658730	1	658730	657452	658608	657637	COQ4	orf19.10526|IPF24323.1|IPF5361.2|Contig4-3096_0016|orf6.5281|CA3118|CaO19.3008|CaO19.10526	Protein described as having role in coenzyme Q biosynthesis; transcriptionally induced by interaction with macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	658783	660916	-	orf19.3009	658783	660916	1	660916	658783	660836	658869		orf19.10527|IPF5363|IPF24268.1|IPF5363.2|Contig4-3096_0018|orf6.5280|CA3117|CaO19.3009|CaO19.10527	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	660883	662018	+	orf19.3010	660883	662018	1	660883	662018	660994	661857		orf19.10528|IPF24322.1|IPF5364.2|Contig4-3096_0019|orf6.5279|CA3116|CaO19.3010|CaO19.10528|LAB2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	662012	664570	-	orf19.3010.1	662012	664570	2	664570|663452	664342|662012	664402	662242	ECM33	orf19.10528.1|ECM33.3|IPF24311.1|IPF5366.2|Contig4-3096_0020|CA3115|ECM33.3f	GPI-anchored cell wall protein; mutants show cell-wall defects and reduced adhesion, host cell damage, and endocytosis; mutant infection is immunoprotective in murine model; fluconazole-induced; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	664105	664270	+	ntar_67	664105	664270	1	664105	664270	664105	664260			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	668690	672153	-	orf19.3012	668690	672153	1	672153	668690	672029	668832	ARO80	orf19.10530|IPF20024.1|IPF28935.1|Contig4-3096_0034|orf6.7749|orf6.5277|CA5048|CaO19.10530|CaO19.3012|IPF20024|CA3114|IPF18384|IPF18384.1	Regulator of aromatic alcohol biosynthesis via the Ehrlich pathway; not essential for viability; similar to S. cerevisiae Aro80p, which is a transcriptional activator required for aromatic amino acid catabolism [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	672293	674003	-	orf19.3013	672293	674003	2	674003|673706	673869|672293	673909	672554	CDC12	orf19.10531|IPF24312.1|IPF3714.2|Contig4-3096_0035|orf6.7750|CA5049|IPF3714	Septin; essential for viability; gene has predicted splice sites; forms ring at sites of cell division and also forms filaments in mature chlamydospore; filamentous growth induced; regulated by Nrg1p, Tup1p, tyrosol and cell density [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	674767	676855	-	orf19.3014	674767	676855	2	676855|676024	676768|674767	675939	675145	BMH1	orf19.10532|IPF24334.1|IPF3712.2|Contig4-3096_0038|orf6.7751|CA5050|CaO19.10532|CaO19.3014|BMH2	14-3-3 protein, role in hyphal growth; possibly regulated by host interaction; sole 14-3-3 protein in C. albicans while S. cerevisiae has two 14-3-3 proteins; localizes to cell surface of yeast-form cells but not of hyphae; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	677269	679206	-	orf19.3015	677269	679206	1	679206	677269	679161	677467	ARX1	orf19.10533|IPF24288.1|IPF3709.1|Contig4-3096_0039|orf6.7752|CA5051|CaO19.10533|CaO19.3015|IPF3709	Predicted ORF in Assemblies 19, 20 and 21; downregulated during core stress response; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	679366	679493	+	ntar_68	679366	679493	1	679366	679493					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	679763	680529	+	orf19.3016	679763	680529	1	679763	680529	679856	680281		orf19.10534|IPF24371.1|IPF3708.2|Contig4-3096_0040|orf6.7753|CA5052|CaO19.3016|CaO19.10534|IPF3708	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	680212	681566	-	orf19.3018	680212	681566	1	681566	680212	681533	680313	SPP1	orf19.10536|IPF24310.1|IPF3707.2|Contig4-3096_0042|orf6.7755|CA5053|CaO19.3018|CaO19.10536|IPF3707	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	681659	683921	+	orf19.3019	681659	683921	1	681659	683921	681715	683751		orf19.10537|IPF24266.1|IPF3704.2|IPF3704|Contig4-3096_0043|orf6.7756|CA5054|CaO19.3019|CaO19.10537	Transcription may be increased in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	683882	684247	-	ntar_69	683882	684247	1	684247	683882	684247	684125			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	683972	685252	+	orf19.3021	683972	685252	2	683972|684073	683998|685252	683972	685176		orf19.10539|IPF24316.1|IPF3701.1|Contig4-3096_0044|orf6.7758|CA5055|IPF3701	Predicted ORF in Assemblies 19, 20 and 21; induced during planktonic growth [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=Z scenario_last_exon=F]
Ca21chr1	684251	684607	-	ntar_70	684251	684607	1	684607	684251	684607	684455			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	684684	685064	-	ntar_71	684684	685064	1	685064	684684	684886	684764			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	685430	686498	+	orf19.3022	685430	686498	1	685430	686498	685483	686415		orf19.10540|IPF24326.1|IPF3698.1|Contig4-3096_0045|orf6.7759|CA5056|RSM24|CaO19.10540|CaO19.3022|IPF3698	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	686543	688759	+	orf19.3023	686543	688759	1	686543	688759	686699	688582		orf19.10541|IPF24276.1|IPF3695.1|Contig4-3096_0047|orf6.7760|CA5057|CaO19.3023|NGG1|CaO19.10541|IPF3695	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	688533	690181	-	orf19.3026	688533	690181	1	690181	688533	690091	688688	MAS1	orf19.10544|IPF24301.1|IPF3692.2|Contig4-3096_0048|orf6.7763|CA5058|CaO19.10544|CaO19.3026	Predicted ORF in Assemblies 19, 20 and 21; transcription is regulated by Nrg1p; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	690357	691858	+	orf19.3027	690357	691858	1	690357	691858	690401	691687		orf19.10545|IPF24306.1|IPF3691.2|Contig4-3096_0049|orf6.7764|CA5059|ARP7|CaO19.10545|CaO19.3027|IPF3691	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	691700	693499	-	orf19.3029	691700	693499	1	693499	691700	693400	691892		orf19.10547|IPF24295.1|IPF3690.2|Contig4-2530_0009|orf6.7766|CA5060|EHD3|CaO19.3029|CaO19.10547|IPF3690	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	693835	695868	-	orf19.3030	693835	695868	1	695868	693835	695803	694214		orf19.10548|IPF24293.1|IPF8495.2|Contig4-3098_0057|Contig4-3098_0058|orf6.7767|CA5061|ATG21|CaO19.3030|CaO19.10548|IPF8495	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	696021	697046	-	orf19.3031	696021	697046	1	697046	696021	696971	696090		orf19.10549|IPF24325.1|IPF8494.2|Contig4-3098_0056|orf6.7768|CA5062|CaO19.3031|SEC62|CaO19.10549	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	697207	699517	-	orf19.3034	697207	699517	1	699517	697207	699468	697600	RLI1	orf19.10552|IPF24273.1|IPF8493.1|Contig4-3098_0053|orf6.7771|CA5063|CaO19.10552|CaO19.3034|IPF8493	Member of RNase L inhibitor (RLI) subfamily of ABC family; predicted not to be a transporter [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	700408	701191	+	ntar_72	700408	701191	1	700408	701191	700953	701075			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	701406	706195	+	orf19.3035	701406	706195	1	701406	706195	701786	706018		orf19.10553|IPF24378.1|IPF8489.2|Contig4-3098_0051|orf6.7772|CA5064|CaO19.10553|CHD1|CaO19.3035	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	706335	708851	+	orf19.3037	706335	708851	1	706335	708851	706559	708448		orf19.10555|IPF24275.1|IPF3584.2|Contig4-3098_0049|orf6.7774|CA5065|CaO19.10555|PAB1|CaO19.3037|IPF3584	Protein described as poly(A)-binding protein; regulated by Gcn4p; induced in response to amino acid starvation (3-aminotriazole treatment); rotein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	708679	708974	-	ntar_73	708679	708974	1	708974	708679					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	709388	712513	+	orf19.3038	709388	712513	1	709388	712513	709532	712198	TPS2	orf19.10556|IPF24244.1|IPF3588.2|Contig4-3098_0048|orf6.7775|CA5066|CaO19.3038|CaO19.10556	Trehalose-6-phosphate (Tre6P) phosphatase; mutation causes heat sensitivity, Tre6P accumulation, and decreased mouse virulence; possible drug target; two conserved phospohydrolase motifs; no human or murine homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	712872	714640	+	orf19.3040	712872	714640	1	712872	714640	713038	714315	EHT1	orf19.10558|IPF24309.1|IPF3589.2|Contig4-3098_0045|orf6.7777|CA5067|CaO19.10558|CaO19.3040|IPF3589	Protein similar to S. cerevisiae Eht1p; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	714464	714845	-	ntar_74	714464	714845	1	714845	714464					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	715357	717601	+	orf19.3041	715357	717601	1	715357	717601	715612	717561		orf19.10559|IPF24269.1|IPF3592.2|Contig4-3098_0041|orf6.7778|CA5068|CaO19.10559|CaO19.3041|IPF3592	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	717757	718670	+	orf19.3042	717757	718670	1	717757	718670	717757	718581		orf19.10560|IPF24335.1|IPF3593.2|Contig4-3098_0040|orf6.7779|CA5069|CaO19.3042|CaO19.10560|IPF3593	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	719276	719380	+	tn(guu)3	719276	719380	2	719276|719345	719313|719380				tN(GUU)3.2	tRNA-Asn predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	719550	721040	+	orf19.3043	719550	721040	1	719550	721040	719686	720741		orf19.10561|IPF24317.1|IPF3594.2|Contig4-3098_0039|orf6.7780|CA5070|CaO19.10561|TGL2|CaO19.3043|IPF3594	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	720918	722668	-	orf19.3045	720918	722668	1	722668	720918	722624	721188		orf19.10563|IPF3597|IPF24294.1|IPF3597.2|Contig4-3098_0035|orf6.7782|CA5071|ALD4|CaO19.10563|CaO19.3045	Predicted ORF in Assemblies 19, 20 and 21; virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	723058	726898	-	orf19.3047	723058	726898	1	726898	723058	726816	723187		orf19.10565|IPF24394.1|IPF3598.2|Contig4-3098_0033|orf6.7784|CA5072|CaO19.3047|SIP3|CaO19.10565|IPF3598	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	727083	730292	-	orf19.3048	727083	730292	1	730292	727083	730160	727188		orf19.10566|IPF24413.1|IPF3603.2|Contig4-3098_0027|Contig4-3098_0029|Contig4-3098_0031|orf6.7785|CA5073|CaO19.3048|CaO19.10566|IPF3603	Predicted ORF in Assemblies 19, 20 and 21; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	731103	732512	-	orf19.3049	731103	732512	1	732512	731103	732512	731103		orf19.10567|IPF24302.1|IPF3607.2|Contig4-3098_0024|orf6.7786|CA5074|CaO19.10567|SPS1|CaO19.3049|IPF3607	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	732704	735876	-	orf19.3050	732704	735876	1	735876	732704	735718	732842	AGE1	orf19.10568|orf6.7787|IPF24238.1|IPF3610.2|Contig4-3098_0022|CA5075|CaO19.10568|CaO19.3050|IPF3610	Protein described as a GTPase activator; transcriptionally regulated by iron; expression greater in low iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	736661	737895	+	orf19.3051	736661	737895	1	736661	737895	736864	737745		orf19.10569|IPF24324.1|IPF15301.2|Contig4-3098_0020|orf6.7788|CA5076|CaO19.3051|CaO19.10569|IPF15301	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	738246	739128	+	orf19.3052	738246	739128	1	738246	739128	738302	738925	YPT1	orf19.10570|IPF24344.1|IPF15299.2|Contig4-3098_0019|orf6.7789|CA5077|CaO19.10570|CaO19.3052	Functional homolog of S. cerevisiae Ypt1p, which is an essential small Ras-type GTPase involved in protein secretion at ER-to-Golgi; dominant-negative mutation causes SAP secretion defect and accumulation of intracellular secretory vesicles [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	738940	740368	-	orf19.3053	738940	740368	1	740368	738940	739753	739208		orf19.10571|IPF24357.1|IPF15297.1|Contig4-3098_0017|orf6.7790|CA5078|CaO19.10571|CaO19.3053|IPF15297	Predicted ORF in Assemblies 19, 20 and 21; identified in extracts from biofilm and planktonic cells; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	740591	742178	+	orf19.3054	740591	742178	1	740591	742178	740662	742107	RPN3	orf19.10572|IPF24300.1|IPF9265.2|Contig4-3098_0013|Contig4-3098_0015|orf6.7791|CA5079|CaO19.3054|CaO19.10572	Predicted ORF in Assemblies 19, 20 and 21; amphotericin B repressed; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	742271	744160	+	orf19.3055	742271	744160	2	742271|742435	742367|744160	742294	744058		orf19.10573|IPF24291.1|IPF9268.2|Contig4-3098_0012|orf6.7792|CA5080|SRB4|IPF9268.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	743991	744674	-	orf19.3057	743991	744674	1	744674	743991	744628	744122		orf19.10575|IPF24363.1|IPF9270.1|Contig4-3098_0008|orf6.7794|ILM1|CaO19.10575|CaO19.3057	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	744743	744960	+	ntar_75	744743	744960	1	744743	744960	744743	744874			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	744807	746468	-	orf19.3058	744807	746468	1	746468	744807	746407	744965		orf19.10576|IPF24298.1|IPF9273.2|Contig4-3098_0006|orf6.7795|CA5081|CaO19.10576|COQ6|CaO19.3058	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	746647	748026	-	orf19.3059	746647	748026	1	748026	746647	747828	746794	SUA71	orf19.10577|IPF24321.1|IPF9274.2|Contig4-3098_0004|orf6.7796|CA5082|CaO19.3059|CaO19.10577|SUA70	Predicted transcriptional regulator; downregulated during planktonic growth, whereas related SUA72 is induced; transcription is positively regulated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	748300	748415	-	tl(uaa)3	748300	748415	2	748415|748345	748377|748300				tL(UAA)3.2	tRNA-Leu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	749169	749267	+	orf19.3059.1	749169	749267	1	749169	749267					[NOT TRANSCRIBED?] ORF added to Assembly 21 based on comparative genome analysis; overlaps orf19.3059.2, which is annotated as a blocked reading frame [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	749587	750716	+	orf19.3060	749587	750716	1	749587	750716	749657	750484		orf19.10578|IPF24333.1|IPF9278.1|Contig4-3098_0002|orf6.7797|CA5083|CaO19.10578|SWP1|CaO19.3060|IPF9278	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	750382	751185	-	orf19.3061	750382	751185	1	751185	750382	751158	750607		orf19.10579|IPF24358.1|IPF9279.1|Contig4-3098_0001|orf6.7798|CA5084|IMP1|CaO19.10579|CaO19.3061	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	751370	752645	-	orf19.3061.1	751370	752645	3	752645|752195|751722	752602|752052|751370	752184	751463		orf19.3061.2|CA5086|RPS22B|CA5085|RPS22.exon2|IPF9280.2	Predicted ORF in Assembly 20 and 21; gene has intron; similar to RPS22A/orf19.6265 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	752785	756419	+	orf19.3062	752785	756419	1	752785	756419	752851	756390		orf19.10580|IPF24395.1|IPF20025.1|Contig4-2792_0003|orf6.7799|CA5087|CaO19.3062|CaO19.10580|IPF20025	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	756245	757183	-	orf19.3063	756245	757183	1	757183	756245	757150	756437		orf19.10581|IPF24342.1|IPF9758.1|Contig4-2792_0004|orf6.7800|CA5088|CaO19.10581|DPB3|CaO19.3063|IPF9758	Phosphorylated protein of unknown function; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	757268	758043	-	orf19.3064	757268	758043	1	758043	757268	757871	757365	MRPL27	orf19.10582|IPF24362.1|IPF9757.1|Contig4-2792_0005|orf6.7801|CA5089|CaO19.3064|CaO19.10582	Putative ribosomal protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	757987	758668	+	orf19.3064.1	757987	758668	1	757987	758668	758360	758599			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	758408	759754	-	orf19.3065	758408	759754	1	759754	758408	759714	758629	DAO1	orf19.10583|IPF24315.1|IPF9755.2|Contig4-2792_0007|Contig4-2792_0008|orf6.7802|CA5090|CaO19.10583|CaO19.3065|IFG4	Putative D-amino acid oxidase; transcription is regulated upon yeast-hyphal switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	761383	765062	+	orf19.3066	761383	765062	1	761383	765062	761491	764928	ENG1	orf19.10584|IPF9751.2|IPF28933.1|Contig4-2792_0015|Contig4-2792_0016|Contig4-2952_0001|orf6.7803|YNR67|ACF3|orf19.71|DSE4|CaO19.3066|CA5091	Endo-1,3-beta-glucanase required for cell separation after division, orthologous to S. cerevisiae Dse4p; caspofungin repressed; fungal-specific (no human or murine homolog); repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	765307	766648	+	orf19.71	765307	766648	1	765307	766648	765540	766592		Contig4-2952_0001|CaO19.71|GRH1	Predicted ORF in Assembly 19 and 21; deleted from/reinstated in Assembly 20 (see Locus History) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	766708	766795	-	tt(cgu)1	766708	766795	2	766795|766743	766760|766708					tRNA-Thr predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	767047	771005	-	orf19.1133	767047	771005	1	771005	767047	771005	767142	MSB1	orf19.8726|IPF6172.3|IPF29571.1|Contig4-2952_0004|orf6.1506|CA0525|MSB1.5eoc|IPF6172.2	Predicted ORF in Assemblies 19, 20 and 21; expression in S. cerevisiae flo8 and flo11 mutants suggests a role in regulation of adhesion factors [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	773906	776246	-	orf19.1037	773906	776246	1	776246	773906	775845	774073		orf19.8639|orf19.8640|IPF26266.1|IPF19718.1|IPF26258.1|IPF13751.2|Contig4-2664_0012|orf6.2320|orf6.2319|CA1036|CA1035|orf19.1038|CaO19.1037|CaO19.8639|IFI2.5f	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	776664	779063	-	orf19.1036	776664	779063	1	779063	776664	778650	776803	MNS1	orf19.8638|IPF6163.1|IPF29592.1|Contig4-2952_0008|orf6.2321|CA1037|CaO19.8638|CaO19.1036	Alpha-1,2-mannosidase; ER form is converted by Kex2p to a cytosolic form; processes Man9GlcNAc2 to Man8GlcNAc2 isomer B; member of endoplasmic-reticulum localized glycosyl hydrolase family 47 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	780767	784208	+	orf19.1035	780767	784208	1	780767	784208	781180	784023	WAR1	orf19.8637|IPF6159.2|IPF17784.3|Contig4-2952_0016|orf6.2322|orf6.265|orf6.3216|CA1038|CaO19.1035|IPF6159	Predicted zinc cluster protein involved in resistance to weak organic acids; has similarity to S. cerevisiae War1p, which is a transcription factor involved in the regulation of weak acid stress response genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	784433	785236	+	orf19.1034	784433	785236	1	784433	785236	784529	785080		orf19.8636|IPF18786.2|IPF6156.1|Contig4-2952_0020|orf6.3217|orf6.2323|CA1625|CaO19.1034|IPF6156	Predicted ORF in Assemblies 19, 20 and 21; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	785107	787009	-	orf19.1033	785107	787009	1	787009	785107	786942	785155	STR2	orf19.8635|IPF26248.1|IPF6155.2|orf6.3218|CA1626|CaO19.1033	Protein not essential for viability; similar to S. cerevisiae Str2p, which is cystathionine gamma-synthase involved in sulfur metabolism [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	788158	790232	+	orf19.1032	788158	790232	2	788158|788486	788375|790232	788364	790210	SKO1	orf19.8634|IPF26249.1|IPF6153.2|Contig4-2301_0003|Contig4-2301_0004|orf6.3219|CA1627|CaO19.8634|CaO19.1032|SKO1.3f|SKO1.3	Putative transcription factor involved in cell wall damage response, similar to S. cerevisiae Sko1p; mutation causes caspofungin sensitivity; induced by osmotic stress via Hog1p; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	790212	794208	-	orf19.1031	790212	794208	1	794208	790212	793652	790431	HMG1	orf19.8633|IPF26280.1|IPF19736.1|Contig4-2301_0005|Contig4-2301_0007|Contig4-2301_0008|orf6.3220|CA1628|CaO19.1031|CaO19.8633	HMG-CoA reductase; enzyme of sterol pathway; inhibited by lovastatin; gene not transcriptionally regulated in response to lovastatin and fluconazole [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	794351	794860	+	ntar_76	794351	794860	1	794351	794860	794614	794736			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	795516	796938	-	orf19.1030	795516	796938	1	796938	795516	796893	795613		orf19.8632|IPF26252.1|IPF14314.2|Contig4-2064_0001|orf6.3221|CA1629|FPR3|CaO19.1030|NPI46	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	797127	798218	+	orf19.1029	797127	798218	1	797127	798218	797227	798159		orf19.8631|IPF26259.1|IPF14315.2|Contig4-2010_0007|orf6.3222|CA1630|RPP1|CaO19.1029	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	798151	799429	-	orf19.1028	798151	799429	1	799429	798151	799429	798251		orf19.8630|IPF19583.2|IPF19582.1|Contig4-2010_0003|Contig4-2010_0005|orf6.3223|orf6.411|CA1631|ELA1|CaO19.1028|IPF19582	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	801713	803065	+	orf19.1027	801713	803065	1	801713	803065	801801	802910	PDR16	orf19.8629|IPF15777.2|IPF19201.1|Contig4-2078_0006|orf6.511|orf6.648|CA6183|CaO19.1027|PDR17	Phosphatidylinositol transfer protein; increased transcription correlates with CDR1 and CDR2 overexpression and azole resistance; induced by fluphenazine, 17-beta-estradiol, ethynyl estradiol, nitric oxide; farnesol-downregulated in biofilm [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	802911	804131	-	orf19.1026	802911	804131	1	804131	802911	804068	803076		orf19.8628|IPF15779.2|IPF17757.1|Contig4-2078_0005|orf6.512|orf6.647|CA0142|CSL4|CaO19.1026	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	804217	804990	+	orf19.1026.1	804217	804990	1	804217	804990	804272	804541			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	804615	805056	-	ntar_77	804615	805056	1	805056	804615					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	805311	805841	+	ntar_78	805311	805841	1	805311	805841					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	806429	811506	-	orf19.4457	806429	811506	1	811506	806429	811506	806539	BNI4	orf19.11937|orf6.2835|IPF22779.1|IPF11847.2|Contig4-2719_0011|CA1366|CaO19.4457|CaO19.11937|IPF11847	Protein required for wild-type cell wall chitin distribution, morphology, hyphal growth; not essential; similar to S. cerevisiae Bni4p (targeting subunit for Glc7p phosphatase, involved in bud-neck localization of chitin synthase III) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	811835	812024	+	ntar_79	811835	812024	1	811835	812024					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	812650	812939	+	ntar_80	812650	812939	1	812650	812939					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	813478	813663	+	ntar_81	813478	813663	1	813478	813663					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	813797	815724	-	orf19.4459	813797	815724	1	815724	813797	815640	813949		orf19.11939|IPF22769.1|IPF11849.2|Contig4-2719_0006|Contig4-2719_0007|orf6.2833|YNL234W|CA1365|CaO19.4459|CaO19.11939|IPF11849	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Ynl234wp, which is a putative heme-binding stress-related protein; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	820980	821342	-	orf19.4461	820980	821342	1	821342	820980	821342	820980		orf19.11941|IPF22784.1|IPF28385.1|orf6.2028|CaO19.4461|CaO19.11941	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	823623	824693	+	orf19.4463	823623	824693	1	823623	824693	823623	824693		orf19.11943|IPF14489.2|IPF19477.2|Contig4-1754_0003|orf6.2030|orf6.29|CA0856|CIS308|CaO19.4463|IFL1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	825278	826123	+	orf19.4464	825278	826123	1	825278	826123	825384	825899	SEN15	orf19.11944|IPF22778.1|IPF14490.2|orf6.2031|CA0857|CaO19.11944|CaO19.4464	Similar to delta subunit of tRNA splicing endonuclease; increased transcription is observed upon fluphenazine treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	825758	828223	-	orf19.4465	825758	828223	1	828223	825758	828046	825995		orf19.11945|IPF22768.1|IPF14493.2|Contig4-1895_0003|orf6.2032|CA0858|CaO19.11945|CaO19.4465|IPF14493	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	828425	830135	-	orf19.4466	828425	830135	1	830135	828425	830116	828572		orf19.11947|IPF14495.2|IPF17107.3|Contig4-1895_0001|orf6.2033|orf6.338|CA0859|CaO19.4466|ERF2|IPF14495|IPF14495.3|IPF14495.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	830194	832025	+	orf19.4467	830194	832025	1	830194	832025	830349	831857		orf19.11948|IPF18468.2|IPF17109.2|orf6.337|orf6.4319|CA2424|CaO19.4467|IPF18468|IPF18468.1	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	832129	832932	+	orf19.4468	832129	832932	1	832129	832932	832188	832697		orf19.11949|IPF19574.1|IPF19575.1|Contig4-3094_0028|orf6.336|orf6.4318|CA2423|CaO19.4468|SDH4|SDH41	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	832810	833902	-	orf19.4470	832810	833902	1	833902	832810	833843	833304		IPF14997.2|IPF28381.1|orf6.4317|CA2422|CaO19.4470|IPF14997.5f|IPF14997	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	834170	837124	-	orf19.4471	834170	837124	1	837124	834170	836915	834306		orf19.11951|IPF22765.1|IPF14998.2|Contig4-2170_0004|orf6.4316|CA2421|CaO19.11951|CaO19.4471|IPF14998	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	837122	837402	+	ntar_82	837122	837402	1	837122	837402					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	837520	837876	+	orf19.4472	837520	837876	1	837520	837876	837520	837837		orf19.11952|IPF22785.1|IPF28386.1|orf6.4315|CaO19.4472|CaO19.11952	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	838135	839080	+	orf19.4473	838135	839080	1	838135	839080	838307	838834		orf19.11953|IPF22777.1|IPF15002.2|Contig4-2170_0002|orf6.4314|CA2420|CaO19.11953|SPC19|CaO19.4473	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	839111	840397	+	orf19.4474	839111	840397	1	839111	840397	839354	840280		orf19.11954|IPF14379|IPF22775.1|IPF14379.2|orf6.4313|CA2419|CaO19.4474|CaO19.11954	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	840347	842011	-	orf19.4475	840347	842011	1	842011	840347	841877	840435	KTR4	orf19.11955|MNT4|IPF22771.1|IPF14377.2|Contig4-2993_0007|orf6.4312|CA2418|CaO19.11955|CaO19.4475	Protein with similarity to mannosyltransferases; induced during cell wall regeneration; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	842723	843898	-	orf19.4476	842723	843898	1	843898	842723	843876	842842		orf19.11957|Contig4-1934_0004|IFD1|IPF22773.1|IPF14375.2|orf6.2004|orf6.4311|CA2417|CaO19.4476|CaO19.11956|IFD6|CA0840|IPF18856.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	844704	845959	-	orf19.4477	844704	845959	1	845959	844704	845857	844844	CSH1	orf6.4310|IFD4|IPF22774.1|IPF14374.2|CA2416|CAgp38|CaO19.11957|CaO19.4477	Member of aldo-keto reductase family, similar to aryl alcohol dehydrogenases; role in adhesion to fibronectin, cell surface hydrophobicity; regulated by temperature, growth phase, benomyl, macrophage interaction; azole resistance associated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	846659	848892	+	orf19.4478	846659	848892	1	846659	848892	846723	848819		orf19.11958|IPF22767.1|IPF17203.2|orf6.4309|CA2415|CaO19.4478|MSD1|CaO19.11958	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	848788	851096	-	orf19.4479	848788	851096	1	851096	848788	851044	848882		orf19.11959|orf19.11960|IPF22770.1|IPF22776.1|IPF13757.2|IPF13756.2|Contig4-2664_0018|Contig4-2664_0021|orf6.4308|orf6.4307|CA2414|CA2413|orf19.4480|IPF13756.3f	Predicted ORF in Assemblies 19, 20 and 21; downregulated during core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	851871	852302	-	orf19.4481	851871	852302	1	852302	851871	852302	851871	MFALPHA	orf19.11961|orf6.4306|MFalpha1|IPF22780.1|IPF13755.1|MF1|Contig4-2664_0016|CA2412|CaO19.11961|CaO19.4481|IPF13755	Alpha factor mating pheromone precursor; three copies of pheromone that are proteolytically processed by Kex2p and possibly by Orf19.5851p; required for alpha cells to mate; expressed specifically in opaque phase MTLalpha/MTLalpha cells [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	854018	855784	+	orf19.4482	854018	855784	1	854018	855784	854018	855784	IFI3	orf19.11962|orf19.11963|IPF22783.1|IPF19949.1|Contig4-2664_0012|orf6.4304|orf6.4305|CA2411|orf19.4483	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; constitutive expression independent of MTL or white-opaque status [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	855759	857193	-	orf19.1039	855759	857193	2	857193|857035	857120|855759	857122	855932		orf19.8641|IPF17890.1|IPF29595.1|Contig4-2664_0010|orf6.2318|CA1034|BET4.3f|BET4.exon2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	857264	858081	+	orf19.1040	857264	858081	1	857264	858081	857326	857970	MAD2	orf19.8642|IPF17891.2|IPF17882.3|Contig4-2664_0009|orf6.2122|orf6.2317|CA1033|CaO19.1040	Protein required for the spindle assembly checkpoint of the cell cycle; necessary for survival in host cell macrophages and for virulence in a mouse model of systemic candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	857780	859468	-	orf19.1041	857780	859468	1	859468	857780	859468	857981		orf19.8643|IPF26251.1|IPF17881.2|Contig4-2664_0008|orf6.2123|CA0918|CaO19.1041|CaO19.8643|IPF17881	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	859474	860615	-	orf19.1042	859474	860615	1	860615	859474	860544	859696	POR1	orf19.8644|IPF26262.1|IPF12994.2|Contig4-2664_0006|orf6.2124|CA0919|VDAC1|CaO19.1042	Mitochondrial outer membrane porin; in detergent-resistant membrane fraction (possible lipid raft component); antigenic in human, mouse; flucytosine-, macrophage-, farnesol- induced; fluconazole, caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	860757	863028	+	orf19.1043	860757	863028	1	860757	863028	862110	863027		orf19.8645|IPF26261.1|IPF12992.2|orf6.2125|CA0921|CaO19.1043|CaO19.8645|IPF12992	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	860833	861445	-	ntar_83	860833	861445	1	861445	860833	861245	861084			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	861585	862000	-	ntar_84	861585	862000	1	862000	861585					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	862989	864150	-	orf19.1045	862989	864150	1	864150	862989	864150	863089		orf19.8647|IPF26260.1|IPF12991.1|Contig4-2647_0003|orf6.2127|CA0922|CaO19.8647|IST3|CaO19.1045|IPF12991	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	864056	866828	+	orf19.1047	864056	866828	1	864056	866828	864198	866747	ERB1	orf19.8649|IPF26243.1|IPF12987.2|Contig4-2647_0005|Contig4-2647_0006|orf6.2129|CA0923|CaO19.1047|IPF12987	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine); hyphal repressed; macrophage repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	867415	868563	+	orf19.1048	867415	868563	1	867415	868563	867455	868489	IFD6	orf19.8650|Contig4-2647_0009|YPX98|YPL88|IFD1|IPF18856.2|IPF17049.2|Contig4-2647_0010|orf6.2004|orf6.2130|CA0924|CaO19.1048|LPG20|IFD5	Aldo-keto reductase family member; similar to aryl alcohol dehydrogenases, S. cerevisiae Ypl088wp; increased protein correlates with MDR1 overexpression (but not CDR1 or CDR2) in fluconazole-resistant clinical isolates; farnesol regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	868476	869284	-	orf19.1049	868476	869284	1	869284	868476	869162	868578		orf19.8651|IPF18855.2|IPF17050.1|Contig4-2647_0011|orf6.2131|CA0925|CaO19.1049|CaO19.8651|IPF17050	Predicted ORF in Assemblies 19, 20 and 21; expression upregulated during planktonic growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	869210	869499	+	ntar_85	869210	869499	1	869210	869499	869210	869353			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	869361	870467	-	orf19.1050	869361	870467	1	870467	869361	870400	869498		orf19.8652|IPF15638.2|IPF17051.3|Contig4-2647_0015|orf6.2006|orf6.2132|CA0841|CaO19.1050|IPF15638	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	870595	871225	-	orf19.1051	870595	871225	1	871225	870595	871141	870746	HTA2	orf19.8653|IPF26275.1|IPF15637.2|Contig4-2647_0017|orf6.2007|CaO19.1051|CaO19.8653	Protein described as histone H2A; farnesol regulated; transcription is downregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	871950	872689	+	orf19.1052	871950	872689	1	871950	872689	872008	872400		orf19.8654|IPF26276.1|IPF15634.2|Contig4-2647_0021|orf6.2008|HTB2|CaO19.1052|CaO19.8654	Predicted histone H2B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	872475	873905	-	orf19.1053	872475	873905	1	873905	872475	873841	872669		orf19.8655|IPF26257.1|IPF15633.2|Contig4-2647_0022|orf6.2009|CA0842|CaO19.8655|BST1|CaO19.1053|IPF15633	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	874058	874432	+	ntar_86	874058	874432	1	874058	874432	874074	874229			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	874659	875581	-	orf19.1054	874659	875581	1	875581	874659	875468	874659		orf19.8656|IPF18853.1|IPF16097.3|Contig4-2647_0024|orf6.2010|orf6.4935|CA0843|CaO19.1054|IPF18853	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	876382	878066	-	orf19.1055	876382	878066	2	878066|877746	877857|876382	877866	876470	CDC3	orf19.8657|IPF16098.2|IPF29594.1|Contig4-2089_0009|orf6.2011|orf6.4934|CA0844	Septin; essential for viability; functional homolog of S. cerevisiae Cdc3p; down-regulation associated with azole resistance; macrophage/pseudohyphal-repressed; virulence-group-correlated expression; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	878711	879534	-	orf19.1057	878711	879534	1	879534	878711	879384	878815		orf19.8659|IPF26268.1|IPF17234.2|Contig4-2089_0004|Contig4-2089_0005|orf6.4932|CA2864|CaO19.1057|CaO19.8659|IPF17234.3f|IPF17234.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	879598	880967	+	orf19.1058	879598	880967	2	879598|880323	880175|880967	879709	880689		orf19.8660|IPF26270.1|IPF20117.1|Contig4-2089_0002|orf6.4931|CA2863|IPF20117	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	880839	881402	-	orf19.1059	880839	881402	1	881402	880839	881330	881013	HHF1	orf19.8661|HHF21|IPF26279.1|IPF7050.1|HHF2|Contig4-1791_0006|orf6.4930|orf6.5621|CA2862|CaO19.1059|CaO19.8661	Putative histone H4; reduced mRNA in homozygous fkh2 null mutant; regulated by Efg1p; fluconazole induced; amphotericin B repressed; farnesol regulated; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	881425	881950	-	orf19.1060	881425	881950	1	881950	881425	881950	881441			 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	882020	882836	+	orf19.1061	882020	882836	1	882020	882836	882239	882649	HHT21	orf19.8663|IPF26271.1|IPF7053.2|HHT2|Contig4-1791_0001|orf6.4928|orf6.5620|CA2861|CaO19.8663|HHT1|CaO19.1061	Putative histone H3; amphotericin B repressed; regulated by Efg1p; farnesol regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	882993	884228	-	orf19.1062	882993	884228	1	884228	882993	884228	882993		orf19.8664|IPF26254.1|IPF7054.1|Contig4-1791_0008|orf6.4927|CA2860|HRQ1|CaO19.8664|CaO19.1062|IPF7054	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	884332	885852	-	orf19.1063	884332	885852	1	885852	884332	885808	884624		orf19.8665|IPF26256.1|IPF7056.2|Contig4-1738_0001|orf6.4926|CA2859|FMP44|CaO19.1063|CaO19.8665|IPF7056	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	885974	889261	-	orf19.1064	885974	889261	2	889261|888113	889191|885974	889191	886084	ACS2	orf19.8666|IPF26246.1|IPF7057.2|Contig4-2199_0001|orf6.4925|CA2858|CaO19.8666|CaO19.1064	Probable acetyl-CoA synthetase, similar to known fungal acetyl-CoA synthetases; antigenic during murine systemic infection; antigenic in human; upregulated by Efg1p; macrophage-induced protein; soluble protein in hyphae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	888611	889256	+	ntar_87	888611	889256	1	888611	889256					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	889411	890359	+	ntar_88	889411	890359	1	889411	890359					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	890350	892425	-	orf19.1065	890350	892425	1	892425	890350	892386	890449	SSA2	orf19.8667|HS72|SSA1|IPF26247.1|IPF7060.2|Contig4-2688_0006|Contig4-2688_0009|orf6.4924|CA2857|CaO19.1065|CaO19.8667	HSP70 family chaperone; antigenic; role in sensitivity to, import of beta-defensin peptides; ATPase domain binds histatin 5; at surface of hyphae, but not yeast-form cells; farnesol-downregulated in biofilm; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	892794	893010	+	ntar_89	892794	893010	1	892794	893010					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	892889	893973	-	orf19.1066	892889	893973	1	893973	892889	893750	892986		orf19.8668|IPF26264.1|IPF7062.2|Contig4-2688_0004|orf6.4923|CA2856|CaO19.8668|CaO19.1066|IPF7062	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	895068	896097	+	orf19.1067	895068	896097	1	895068	896097	895168	895953	GPM2	orf19.8669|IPF26265.1|IPF7065.1|GPM1-2|Contig4-2688_0002|orf6.4922|CA2855|CaO19.1067|CaO19.8669	Protein described as phosphoglycerate mutase; decreased expression in hyphae compared to yeast-form cells; macrophage/pseudohyphal-repressed; induced by high levels of peroxide stress, farnesol-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	897633	899996	+	orf19.1069	897633	899996	1	897633	899996	898013	899623	RPN4	orf19.8671|IPF26253.1|IPF7070.2|Contig4-2688_0001|Contig4-2992_0023|orf6.4920|CA2854|CaO19.1069	DNA binding protein with Cys2-His2 zinc-finger; putative regulator of proteasome genes; DNA recognition sequence (GAAGGCAAAA) enriched in regions upstream of proteasome genes; induced in core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	899958	901500	-	orf19.1070	899958	901500	1	901500	899958	901156	900062		orf19.8672|IPF26255.1|IPF17057.2|Contig4-2882_0025|orf6.4919|CA2853|CaO19.1070|CaO19.8672|IPF17057	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	901506	904112	-	orf19.5203	901506	904112	1	904112	901506	903994	901625		orf19.8673|orf19.12670|IPF26263.1|IPF17059.3|IPF7581.3|IPF19744.1|Contig4-2882_0023|orf6.3419|orf6.627|orf6.4918|CA1769|orf19.1071|CaO19.5203|IPF7581.5eoc|IPF7581	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	905022	905647	-	orf19.5201.1	905022	905647	1	905647	905022	905590	905339			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	905978	906648	-	orf19.5201	905978	906648	1	906648	905978	906625	906023		orf19.12668|IPF22029.1|IPF7585.2|Contig4-2882_0015|Contig4-2882_0016|orf6.3417|CA1768|CaO19.12668|RSM18|CaO19.5201|IPF7585	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	906881	908629	+	orf19.5200	906881	908629	1	906881	908629	907197	908141	SIT4	orf19.12667|IPF22025.1|IPF7586.1|Contig4-2882_0013|orf6.3416|CA1767|CaO19.5200|CaO19.12667	Serine/threonine protein phosphatase catalytic subunit; has a role in cell wall maintenance, hyphal growth, and virulence in a mouse systemic infection model [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	908512	910887	-	orf19.5198	908512	910887	1	910887	908512	910860	908635	NOP4	orf19.12665|IPF22023.1|IPF7589.1|Contig4-2882_0011|orf6.3414|CA1766|CaO19.12665|CaO19.5198	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine); downregulated in core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	911127	914393	-	orf19.5197	911127	914393	2	914393|913778	914224|911127	914393	911174	APE2	orf19.12664|IPF22021.1|IPF7593.2|Contig4-2882_0008|Contig4-2882_0010|orf6.3413|CA1765|CaO19.5197|CaO19.12664	Neutral arginine-, alanine-, leucine-specific metallo-aminopeptidase; expected to be secreted, purified from cell wall and intracellular fractions; protein repressed during the mating process; Hog1p-, farnesol-induced [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=Z scenario_last_exon=A]
Ca21chr1	914491	915178	-	orf19.5196	914491	915178	1	915178	914491	915137	914604	ESS1	orf19.12663|PIN1|IPF22030.1|IPF7596.1|Contig4-2882_0006|orf6.3412|CA1764|CaO19.5196|CaO19.12663|IPF7596	Prolyl isomerase (parvulin class); essential; involved in yeast-hyphal switching, Cph1p pathway; has inflexible linker between WW and isomerase domains, unlike human homolog; functional homolog of S. cerevisiae Ess1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	915250	916233	-	orf19.5195	915250	916233	1	916233	915250	916169	915330		orf19.12662|IPF22026.1|IPF7599.1|Contig4-2882_0004|orf6.3411|CA1763|CaO19.12662|URA6|CaO19.5195	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	916433	917397	-	orf19.5194.1	916433	917397	2	917397|917226	917292|916433	917328	916502		IPF22027.1|IPF19928.1|Contig4-2882_0003|CA1762|IPF20014	ORF Predicted by Annotation Working Group; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	916866	917234	+	orf19.6833.2	916866	917234	1	916866	917234	916866	917234		IPF20285.1|IPF20014.1|Contig4-1399_0001	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	917406	918528	-	orf19.6837	917406	918528	2	918528|918280	918352|917406	918388	917556		FMA1|orf19.12660|orf19.14127|IPF7602|IPF22028.1|IPF7602.3|IPF20284.1|IPF3538.2|Contig4-1399_0002|Contig4-2882_0001|Contig4-3051_0002|orf6.3409|orf6.6986|CA1761|orf19.5193|CaO19.6837|CaO19.14127	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	918735	919674	-	orf19.6838	918735	919674	1	919674	918735	919619	918810		orf19.14128|IPF20283.1|IPF3537.1|Contig4-3051_0004|orf6.6987|CA4442|CaO19.14128|CaO19.6838|IPF3537	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	918900	919355	+	ntar_90	918900	919355	1	918900	919355	919044	919211			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	920040	920788	-	orf19.6840	920040	920788	1	920788	920040	920753	920232		orf19.14130|IPF20288.1|IPF3535.2|Contig4-3051_0005|orf6.6989|CA4443|CaO19.14130|CaO19.6840|IPF3535	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	921713	926089	-	orf19.6842	921713	926089	1	926089	921713	925975	921782		orf19.14132|IPF20294.1|IPF3533.2|Contig4-3051_0008|Contig4-3051_0009|orf6.6991|CA4444|TUS1|CaO19.6842|IPF3533	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	926882	928167	+	orf19.6843	926882	928167	1	926882	928167	926944	928065		orf19.14133|IPF20278.1|IPF3530.2|Contig4-3051_0013|orf6.6992|CA4445|CaO19.6843|CaO19.14133|IPF3530	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	929053	930983	+	orf19.6844	929053	930983	1	929053	930983	929160	930812	ICL1	orf19.14134|IPF20271.1|IPF3527.1|Contig4-3051_0014|Contig4-3051_0015|orf6.6993|CA4446|CaO19.6844|CaO19.14134	Isocitrate lyase; enzyme of glyoxylate cycle; required for wild-type virulence in murine systemic infection; no mammalian homolog; gene induced upon phagocytosis by macrophage; farnesol regulated; Pex5p-dependent peroxisomal localization [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	931169	932770	+	orf19.6845	931169	932770	1	931169	932770	931252	932691		orf19.14135|IPF20274.1|IPF3523.2|Contig4-3051_0016|orf6.6994|CA4447|CaO19.14135|CaO19.6845|IPF3523	Putative transcription factor with bZIP DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	932618	933971	-	orf19.6846	932618	933971	2	933971|933802	933882|932618	933901	932824	PHO85	orf19.14136|IPF20279.1|IPF3522.2|Contig4-3051_0017|orf6.6995|CA4448	Functional homolog of S. cerevisiae Pho85p, which is a cyclin-dependent kinase that regulates processes including transcription of PHO genes involved in phosphate metabolism; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	934066	935851	-	orf19.6847	934066	935851	1	935851	934066	935776	934217		orf19.14137|IPF20277.1|IPF3520.2|Contig4-3051_0018|orf6.6996|CA4449|IPF3520	Predicted ORF in Assemblies 19, 20 and 21; virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	936043	939060	-	orf19.6848	936043	939060	1	939060	936043	938988	936148	VPS16	orf19.14138|IPF20257.1|IPF3518.1|IPF3518|Contig4-3051_0021|orf6.6997|CA4450|VAM9|CaO19.6848|CaO19.14138	Protein similar to S. cerevisiae Vps16p, which is involved in protein-vacuolar targeting; likely to be essential for growth, based on insertional mutagenesis; downregulated in biofilm or in azole-resistant strain that overexpresses MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	939148	939559	+	orf19.6849	939148	939559	1	939148	939559	939235	939537	ELC1	orf19.14139|IPF20300.1|IPF3516.1|Contig4-3051_0022|orf6.6998|CA4451|CaO19.6849|CaO19.14139	Transcription is regulated by Nrg1p and Mig1p; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	939951	941861	+	orf19.6850	939951	941861	1	939951	941861	940083	941816		orf19.14140|IPF3514|IPF20269.1|IPF3514.2|Contig4-3051_0023|orf6.6999|CA4452|CaO19.6850|RMD5|CaO19.14140	Putative transcription factor with C3HC4 zinc finger DNA-binding motif; not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	941869	943475	-	orf19.6851	941869	943475	1	943475	941869	943413	942016	CHL4	orf19.14141|IPF20273.1|IPF15162.2|Contig4-3051_0024|orf6.7000|CA4453|CaO19.14141|CaO19.6851	Protein described as having role in chromosome segregation; RNA abundance regulated by tyrosol and cell density [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	943616	944862	-	orf19.6852	943616	944862	1	944862	943616	944536	943709		orf19.14142|IPF20280.1|IPF15160.2|Contig4-2659_0014|orf6.7001|CA4454|CaO19.14142|CaO19.6852|IPF15160	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	946111	946921	+	orf19.6852.1	946111	946921	1	946111	946921	946320	946508			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	947524	948677	-	orf19.6853	947524	948677	1	948677	947524	948645	947608		orf19.14143|IPF8455.2|IPF8454.2|Contig4-2659_0010|orf6.7002|CA4455|CaO19.14143|CaO19.6853|IPF8454	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	949337	951659	+	orf19.6854	949337	951659	3	949337|949763|950120	949474|949905|951659	949400	951542	ATP1	orf19.14144|orf6.7003|IPF20276.1|IPF8460.2|Contig4-2659_0004|CA4456|CA4457|ATP1.exon3|ATP1.exon2|IPF8458.1|orf19.6853.3	Protein similar to alpha subunit of ATP synthase; antigenic in human, mouse; at surface of hyphae, not yeast-form; soluble protein in hyphae; induced by ciclopirox olamine, ketoconazole, or flucytosine; downregulated by Efg1p, caspofungin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	952222	954303	+	orf19.6855	952222	954303	1	952222	954303	952391	954121		orf19.14145|IPF20270.1|IPF8464.2|Contig4-2659_0001|orf6.7004|CA4458|CaO19.6855|IPF8464	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	954057	957837	-	orf19.783	954057	957837	1	957837	954057	957758	954267		orf19.8405|IPF26542.1|IPF10810.3|orf6.4113|CA2277|CaO19.8405|NEO1|CaO19.783|DRS21.5eoc|DRS21|IPF10810.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	958746	960945	+	orf19.782	958746	960945	1	958746	960945	958856	960817		orf19.8404|IPF26517.1|IPF10806.2|Contig4-2404_0004|orf6.4114|CA2278|CaO19.782|CaO19.8404|IPF10806	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	962001	964178	+	orf19.781	962001	964178	1	962001	964178	962001	964178		orf19.8403|IPF26516.1|IPF10804.2|Contig4-2404_0008|orf6.4115|DUR3|CA2279|CaO19.8403|DUR31|CaO19.781	Putative urea transporter; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr1	965108	970720	+	orf19.780	965108	970720	1	965108	970720	965238	970679	DUR1,2	orf19.8402|IPF26532.1|IPF9766.2|Contig4-2697_0006|Contig4-2697_0007|orf6.4116|CA2280|CaO19.780|DUR1|2|CaO19.8402|"DUR1|2"	Urea amidolyase, contains urea carboxylase and allophanate hydrolase activities needed to hydrolyze urea to CO2; required for utilization of urea as nitrogen source and for hyphal switch in macrophages; transcription is regulated by Nrg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	968672	969572	-	ntar_91	968672	969572	1	969572	968672	969065	968943			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	969897	970202	-	ntar_92	969897	970202	1	970202	969897					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	970439	970609	-	ntar_93	970439	970609	1	970609	970439					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	970929	972357	+	orf19.779	970929	972357	1	970929	972357	970989	972230	HAT1	orf19.8401|IPF19108.2|IPF9767.2|Contig4-2697_0005|orf6.4117|orf6.894|CA2281|CaO19.779	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	972556	972824	-	ntar_94	972556	972824	1	972824	972556	972711	972556			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	972925	973053	-	ntar_95	972925	973053	1	973053	972925					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	973505	974851	+	orf19.778	973505	974851	1	973505	974851	973551	974477	PIL1	orf19.8400|orf6.893|EBP1|IPF26526.1|IPF9770.2|Contig4-2697_0002|CA6179|CaO19.778|SLB1|CaO19.8400|IPF9770	Echinocandin-binding protein; localizes to cell surface of hyphae, but not yeast-form cells; biofilm induced; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	975036	976943	-	orf19.776	975036	976943	1	976943	975036	976943	975036		orf19.8398|IPF26519.1|IPF3875.3|Contig4-2653_0014|orf6.1672|orf6.891|CA0630|SPO69|CaO19.776|IPF3875|IPF3875.5eoc|IPF3875.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	977189	980171	-	orf19.775	977189	980171	1	980171	977189	980005	977270		orf19.8397|IPF26510.1|IPF3876.2|Contig4-2653_0010|Contig4-2653_0011|orf6.1671|CA0629|CaO19.775|CaO19.8397|IPF3876	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	980293	981672	-	orf19.773	980293	981672	1	981672	980293	981250	980663		orf19.8395|orf6.1669|IPF17412.3|IPF3878.2|Contig4-2653_0008|orf6.1014|CA0628|CaO19.773|IPF3878	Putative ortholog of S. cerevisiae Rsa3p, which is a nucleolar protein involved in maturation of pre-60S ribosomal particles that interacts with Dbp6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	981949	982540	+	orf19.772.1	981949	982540	1	981949	982540	982240	982461			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	982476	983956	-	orf19.772	982476	983956	1	983956	982476	983901	982615	LYS21	orf19.8394|IPF3880.2|IPF16113.3|LYS22|Contig4-2653_0004|orf6.1013|orf6.3672|CA0261|CaO19.772|LYS212	Putative homocitrate synthase of lysine biosynthesis; expression is increased in a fluconazole-resistant isolate; shows colony morphology-related gene regulation by Ssn6p; ketoconazole-repressed; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	984689	985993	+	orf19.771	984689	985993	1	984689	985993	984797	985843	LPG20	orf19.8393|YPL088|IFD2|IPF16116.2|IPF3883.2|Contig4-2653_0002|orf6.1012|orf6.3671|CA1959|CaO19.771	Protein of aldo-keto reductase family; nonessential; similar to aryl alcohol dehydrogenases, S. cerevisiae Ypl088wp, A. tumefaciens MocA; osmotic stress-induced, correlates with overexpression of MDR1 in fluconazole-resistant isolate [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	986188	987602	+	orf19.769	986188	987602	1	986188	987602	986332	987516	IFE1	orf19.8391|IPF16118.2|IPF3885.2|orf6.1009|orf6.1010|orf6.3669|CA1958|YAL061|BDH1|CaO19.769	Protein not essential for viability; similar to S. cerevisiae Yal061wp, which is a putative polyol dehydrogenase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	987472	990585	-	orf19.768	987472	990585	1	990585	987472	990557	987594	SYG1	orf19.8389|IPF16589.3|IPF3887.2|Contig4-2869_0003|orf6.3668|orf6.698|CA1957|CaO19.768|IPF3887	Protein not essential for viability; similar to S. cerevisiae Syg1p, which is a plasma membrane protein that may be involved in signal transduction [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	991160	991402	+	ntar_96	991160	991402	1	991160	991402					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	991290	993278	-	orf19.767	991290	993278	1	993278	991290	992851	991691	ERG3	orf19.8387|IPF16592.2|IPF3890.1|Contig4-1987_0003|orf6.3667|orf6.696|CA1956|CaO19.8387|CaO19.767	C-5 sterol desaturase; introduces C-5(6) double bond into episterol in ergosterol biosynthesis; clinically-isolated homozygous null mutants show azole resistance, defects in hyphal growth and virulence; Efg1p-repressed; fluconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	994161	997161	-	orf19.764	994161	997161	1	997161	994161	997102	994445		orf19.8384|orf19.8385|IPF26522.1|IPF26525.1|IPF3897.2|IPF18581.1|Contig4-2890_0002|Contig4-2890_0003|Contig4-2890_0004|orf6.3664|orf6.3665|CA1954|CA1955|orf19.765|IPF3897.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	997283	998122	+	orf19.763	997283	998122	1	997283	998122	997365	998039		orf19.8383|IPF26528.1|IPF3899.1|Contig4-2890_0005|orf6.3663|CA1953|CaO19.763|CBC2|CaO19.8383|IPF3899	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	998186	1000297	-	orf19.762	998186	1000297	1	1000297	998186	1000297	998186		orf19.8382|IPF26518.1|IPF3901.2|Contig4-2890_0006|orf6.3662|CA1952|CaO19.8382|ASM4|CaO19.762|IFP1	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1001612	1003951	+	orf19.761	1001612	1003951	1	1001612	1003951	1001683	1003809	TCO89	orf19.8381|IPF18586.1|IPF3902.3|Contig4-2890_0009|orf6.3640|orf6.3661|CA1933|CaO19.761|IPF18586	Protein described as a homolog of <i>S. cerevisiae</i> Tco89p, which is a component of the TOR C1 complex that is involved in the regulation of growth and cell wall integrity; heterozygous null mutant displays sensitivity to rapamycin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1003815	1004351	-	orf19.760	1003815	1004351	1	1004351	1003815	1004351	1003980		orf19.8380|IPF26539.1|IPF3903.2|Contig4-2890_0010|orf6.3639|CA1932|GON5|CaO19.8380|CaO19.760|IPF3903	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1004493	1007435	+	orf19.759	1004493	1007435	1	1004493	1007435	1004536	1007346		orf19.8379|IPF26509.1|IPF3905.2|Contig4-2890_0011|orf6.3638|CA1931|SEC21|CaO19.759|CaO19.8379|IPF3905	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1007312	1007882	-	orf19.758	1007312	1007882	1	1007882	1007312	1007882	1007511		orf19.8378|IPF26529.1|IPF3906.1|Contig4-2890_0012|orf6.3637|CA1930|CaO19.8378|CaO19.758|IPF3906.3f|IPF3906.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1008273	1008549	-	orf19.757.1	1008273	1008549	1	1008549	1008273	1008446	1008273			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1008926	1011733	+	orf19.757	1008926	1011733	1	1008926	1011733	1009021	1011591		orf19.8377|IPF26511.1|IPF3908.3|Contig4-2890_0014|Contig4-2890_0016|orf6.319|orf6.3636|CA0049|CaO19.757|IPF3908|IPF3908.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1012846	1014905	+	orf19.756	1012846	1014905	1	1012846	1014905	1013057	1014823	SAP7	orf19.8376|IPF19935.1|IPF29700.1|Contig4-2608_0006|orf6.3635|CA1929|CaO19.8376|CaO19.756	Member of the secreted aspartyl proteinase family; expression detected during human oral infection; regulated by Ssn6p; role in murine intravenous infection; induced during, but not required for, murine vaginal infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1014980	1015587	-	orf19.755	1014980	1015587	1	1015587	1014980	1015525	1015163	MRPL37	orf19.8375|IPF26538.1|IPF13404.1|Contig4-2000_0004|orf6.3634|CA1928|CaO19.755|CaO19.8375	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1015803	1017105	+	orf19.754	1015803	1017105	1	1015803	1017105	1015852	1017042	YBN5	orf19.8374|IPF26524.1|IPF13405.2|Contig4-2000_0001|Contig4-2000_0003|orf6.3633|CA1927|CaO19.754|CaO19.8374	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1017567	1020268	+	orf19.753	1017567	1020268	1	1017567	1020268	1017748	1020039		orf19.8373|IPF13407.2|IPF29699.1|Contig4-2145_0002|orf6.3632|CA1926|IPF13407	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1019004	1019515	-	ntar_97	1019004	1019515	1	1019515	1019004	1019208	1019068			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1019840	1021398	-	orf19.752	1019840	1021398	1	1021398	1019840	1021152	1020193		orf19.8372|IPF18587.2|IPF13408.2|Contig4-2145_0003|orf6.3631|orf6.499|CA1925|CaO19.752|IPF18587|IPF18587.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1021587	1022435	-	orf19.751	1021587	1022435	1	1022435	1021587	1022435	1021734		orf19.8371|IPF26527.1|IPF13409.2|Contig4-2145_0005|orf6.500|CA0096|CaO19.751|CaO19.8371|IPF13409|IPF13409.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1021697	1022240	+	ntar_98	1021697	1022240	1	1021697	1022240					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1023282	1023818	-	orf19.750	1023282	1023818	1	1023818	1023282	1023818	1023282		orf19.8370|IPF26531.1|IPF15177.2|Contig4-1816_0001|orf6.1207|CA0365|CaO19.750|CaO19.8370|IPF15177	Predicted ORF in Assemblies 19, 20 and 21; exogenously expressed protein is a substrate for Kex2p processing in vitro; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1024839	1025118	-	ntar_99	1024839	1025118	1	1025118	1024839					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1028014	1032719	-	orf19.48	1028014	1032719	1	1032719	1028014	1032522	1028341		orf19.7710|orf19.8369|orf6.534|IPF17790.3|IPF29973.1|IPF26514.1|IPF17515.2|Contig4-1613_0005|orf6.202|orf6.1208|CA0030|CA0103|orf19.749|IPF17790.5eoc|IPF17790|IPF17790.2	Predicted ORF in Assemblies 19, 20 and 21; likely to be essential for growth, based on an insertional mutagenesis strategy; virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1033784	1035958	-	orf19.50	1033784	1035958	1	1035958	1033784	1035890	1033908		orf19.7711|IPF27199.1|IPF11181.2|Contig4-2627_0007|orf6.4556|CA2601|CaO19.50|CaO19.7711|IPF11181	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1033908	1034142	+	ntar_100	1033908	1034142	1	1033908	1034142					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1036817	1041036	+	orf19.51	1036817	1041036	1	1036817	1041036	1036865	1040956		orf19.7712|IPF27203.1|IPF11177.2|Contig4-2627_0005|orf6.4555|CA2600|CLU1|CaO19.7712|CaO19.51|IPF11177	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1041891	1044002	-	orf19.52	1041891	1044002	1	1044002	1041891	1043587	1042025		orf19.7713|IPF27200.1|IPF11176.2|Contig4-2627_0002|orf6.4554|CA2599|CaO19.52|MMT1|CaO19.7713|IPF11176	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1044139	1045645	-	orf19.53	1044139	1045645	1	1045645	1044139	1045557	1044424		orf19.7714|IPF27201.1|IPF13142.2|Contig4-2469_0006|orf6.4553|CA2598|CaO19.53|UAF22|CaO19.7714|IPF13142	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1048035	1050539	+	orf19.54	1048035	1050539	1	1048035	1050539	1048370	1050334	RHD1	orf19.7715|IPF27198.1|IPF13148.2|Contig4-2469_0001|orf6.4552|CA2597|BMT2|WRY7|CaO19.7715|CaO19.54|IFQ3	Putative beta-mannosyltransferase, required for the addition of beta-mannose to the acid-labile fraction of cell wall phosphopeptidomannan; member of a 9-gene family; transcriptionally regulated on yeast-hyphal and white-opaque switches [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1050374	1051742	-	orf19.55	1050374	1051742	1	1051742	1050374	1051487	1050513		orf19.7716|IPF19547.2|IPF19546.1|orf6.4551|orf6.56|CA2596|CaO19.55|IPF19546	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1051980	1053940	-	orf19.56	1051980	1053940	1	1053940	1051980	1053794	1052052	ARG2	orf19.7717|IPF19457.2|IPF12823.1|Contig4-2475_0007|orf6.4550|orf6.57|CA2595|CaO19.56	Putative enzyme of arginine biosynthesis; transcription of genes of arginine biosynthesis pathway, except for ARG2, is induced upon phagocytosis by macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1054013	1054892	-	orf19.57	1054013	1054892	2	1054892|1054653	1054738|1054013	1054857	1054162	PSF2	orf19.7718|IPF27202.1|IPF12824.1|Contig4-2475_0005|orf6.4549|CA2594|CaO19.57|IPF12824	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1055273	1057832	-	orf19.58	1055273	1057832	1	1057832	1055273	1057731	1055371	RRP6	orf19.7719|IPF19452.2|IPF12827.2|Contig4-2475_0001|orf6.4548|orf6.74|CA2593|CaO19.58	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1057940	1059376	+	orf19.59	1057940	1059376	1	1057940	1059376	1058028	1059233	REI1	orf19.7720|IPF12828.3|IPF18447.1|orf6.4547|orf6.73|CA2592|CaO19.59|IPF18447	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1059206	1062020	-	orf19.4064	1059206	1062020	1	1062020	1059206	1061940	1059283	GPI7	orf19.7721|orf19.11547|IPF23187.1|IPF17402.2|IPF27205.1|IPF18448.1|Contig4-2941_0010|orf6.4546|orf6.3021|CA1488|CA2591|orf19.60|IPF17402.5eoc|IPF17402	Protein involved in attachment of GPI-linked proteins to cell wall; member of major facilitator superfamily; phosphodiesterase/nucleotide pyrophosphatase domain; similar to S. cerevisiae Gpi7p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1064026	1064495	-	ntar_101	1064026	1064495	1	1064495	1064026					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1064065	1065792	+	orf19.4063	1064065	1065792	1	1064065	1065792	1064065	1065792	GPT1	orf19.11546|IPF19374.1|IPF10519.2|Contig4-2526_0008|orf6.248|orf6.249|orf6.3020|CA1487|CaO19.4063	GABA/polyamine transporter; 9 to 11 membrane spanning segments; complements GABA uptake defect of an S. cerevisiae uga4 put4 gap1 triple mutant; complements growth of an S. cerevisiae spe1 mutant under polyamine limitation [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr1	1064628	1064814	-	ntar_102	1064628	1064814	1	1064814	1064628					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1065092	1065395	-	ntar_103	1065092	1065395	1	1065395	1065092	1065395	1065213			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1066130	1067428	+	orf19.4062	1066130	1067428	1	1066130	1067428	1066173	1067288		orf19.11544|IPF23189.1|IPF10521.2|Contig4-2526_0006|orf6.3019|CA1486|UAF21|CaO19.4062|CaO19.11544|IPF10521	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1067465	1068500	+	orf19.4061	1067465	1068500	1	1067465	1068500	1067600	1068403		orf19.11543|IPF23191.1|IPF20082.1|Contig4-1646_0002|Contig4-2526_0004|orf6.3018|CA1485|CaO19.11543|CaO19.4061|IPF20082	Predicted ORF in Assemblies 19, 20 and 21; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1068391	1069805	-	orf19.4060	1068391	1069805	1	1069805	1068391	1069691	1068579	ARO4	orf19.11542|IPF23190.1|IPF10524.2|Contig4-1646_0003|Contig4-2526_0003|orf6.3017|CA1484|CaO19.11542|CaO19.4060	3-Deoxy-D-arabinoheptulosonate-7-phosphate synthase; enzyme of aromatic amino acid biosynthesis; GCN-regulated; feedback-inhibited by tyrosine when produced in S. cerevisiae; fungal-specific; Aro3p and Aro4p catalyze the same reaction [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1070107	1072182	+	orf19.4059	1070107	1072182	1	1070107	1072182	1070570	1071850		orf19.11541|IPF7656.2|IPF10526.2|Contig4-2526_0001|orf6.3016|orf6.785|CA1483|YHC3|CaO19.4059	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1072230	1072670	+	orf19.4057	1072230	1072670	1	1072230	1072670	1072230	1072670		IPF7657.1|IPF28537.1|Contig4-1726_0002|Contig4-1812_0004|orf6.3014|orf6.784|CaO19.4057	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1082643	1083998	+	orf19.4056	1082643	1083998	1	1082643	1083998	1082678	1083949	GAT2	orf19.11538|IPF23188.1|IPF7666.2|Contig4-2593_0012|orf6.2451|CA1120|CaO19.11538|CaO19.4056|IPF7666	Putative DNA-binding transcription factor; similar to S. cerevisiae Gat2p; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1085006	1085239	-	orf19.450	1085006	1085239	1	1085239	1085006	1085239	1085006		orf19.8080|IPF26889.1|IPF17483.2|Contig4-2593_0010|orf6.3089|CA1537|CaO19.8080|CaO19.450|IPF17483	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1088500	1088751	-	ntar_104	1088500	1088751	1	1088751	1088500					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1092420	1094144	-	orf19.449	1092420	1094144	1	1094144	1092420	1093862	1092666		orf19.8079|IPF17500.2|IPF5915.2|Contig4-2840_0016|orf6.1739|orf6.237|YKR70|CA0670|CaO19.449|IPF5915	Predicted ORF in Assemblies 19, 20 and 21; possible phosphatidyl synthase; transcription reduced upon yeast-hyphal switch; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1094621	1096060	-	orf19.448	1094621	1096060	1	1096060	1094621	1096011	1094731		orf19.8078|IPF18257.2|IPF5918.2|Contig4-2840_0014|orf6.1738|orf6.6516|CA0669|CaO19.448|IPF5918	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1096326	1097020	+	ntar_105	1096326	1097020	1	1096326	1097020	1096592	1096789			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1096874	1097700	-	orf19.446.2	1096874	1097700	2	1097700|1097396	1097550|1096874	1097577	1097191		CA0668|IPF18910.3f	Predicted ORF in Assembly 20 and 21; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1097828	1099123	-	orf19.446.1	1097828	1099123	2	1099123|1098498	1098601|1097828	1098637	1098305		CA6175|IPF5921	Predicted ORF in Assembly 20 and 21; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1098793	1099230	+	ntar_106	1098793	1099230	1	1098793	1099230					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1099190	1100243	-	orf19.446	1099190	1100243	1	1100243	1099190	1100199	1099306		orf19.8076|IPF26878.1|IPF5922.2|Contig4-2840_0009|orf6.6515|CA4068|CaO19.446|CaO19.8076|IPF5922	Predicted ORF in Assemblies 19, 20 and 21; constitutive expression independent of MTL or white-opaque status; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1100579	1101071	+	ntar_107	1100579	1101071	1	1100579	1101071	1100946	1101071			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1101103	1101252	+	ntar_108	1101103	1101252	1	1101103	1101252					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1101132	1102511	-	orf19.445	1101132	1102511	1	1102511	1101132	1102445	1101288		orf19.8075|IPF26872.1|IPF5924.2|Contig4-2840_0008|orf6.6514|CA4067|CaO19.445|CaO19.8075|IPF5924	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1102531	1103144	-	orf19.444	1102531	1103144	1	1103144	1102531	1103095	1102658		orf19.8074|IPF26891.1|IPF5925.2|Contig4-2840_0006|orf6.6513|CA4066|CaO19.8074|CaO19.444|IPF5925	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1103248	1104072	+	orf19.443	1103248	1104072	1	1103248	1104072	1103345	1103932		orf19.8073|IPF26885.1|IPF5926.2|Contig4-2840_0004|orf6.6512|CA4065|CaO19.8073|RPC25|CaO19.443	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1103812	1105455	-	orf19.441	1103812	1105455	1	1105455	1103812	1105392	1104058	RPT1	orf19.8071|IPF26869.1|IPF5928.2|Contig4-2840_0003|orf6.6510|CA4064|CaO19.8071|CaO19.441	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1104299	1104913	+	orf19.442	1104299	1104913	1	1104299	1104913	1104299	1104913		IPF26884.1|IPF5927.1|orf6.6511	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1105617	1107601	-	orf19.440	1105617	1107601	1	1107601	1105617	1107598	1105682	SDH1	orf19.8070|IPF26863.1|IPF5931.2|Contig4-2840_0002|CA4063|CaO19.440|CaO19.8070|SDH11|orf6.6509	Protein described as mitochondrial succinate dehydrogenase; macrophage/pseudohyphal-induced; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1107960	1108970	-	orf19.439	1107960	1108970	1	1108970	1107960	1108916	1108197		orf19.8069|IPF26880.1|IPF5933.2|orf6.6508|CA4062|CaO19.439|MHR1|CaO19.8069|IPF5933	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1108007	1108305	+	ntar_109	1108007	1108305	1	1108007	1108305	1108042	1108305			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1109113	1111003	+	orf19.438	1109113	1111003	1	1109113	1111003	1109186	1110934		orf19.8068|IPF26866.1|IPF5935.2|Contig4-2492_0006|orf6.6507|CA4061|CaO19.438|CaO19.8068|IPF5935	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1111151	1113339	+	orf19.437	1111151	1113339	1	1111151	1113339	1111223	1113181	GRS1	orf19.8067|IPF26861.1|IPF5937.1|Contig4-2492_0003|orf6.6506|CA4060|CaO19.8067|CaO19.437	Putative tRNA-Gly synthetase; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1113160	1115503	-	orf19.434	1113160	1115503	1	1115503	1113160	1115479	1113371	PRD1	orf19.8064|IPF5940.2|IPF29825.1|Contig4-2492_0001|Contig4-2492_0002|orf6.6503|CA4059|CaO19.8064|CaO19.434	Transcription is regulated by Nrg1p, Mig1p, and Tup1p; Hog1p-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1116103	1116195	+	tp(ugg)1	1116103	1116195	2	1116103|1116160	1116138|1116195				tP(UGG)1.2	tRNA-Pro predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1116240	1118100	-	orf19.433	1116240	1118100	1	1118100	1116240	1118038	1116296		orf19.8063|IPF7717.2|IPF29829.1|Contig4-2853_0014|orf6.6502|CA4058|CaO19.433|IPF7717	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1116288	1116632	+	ntar_110	1116288	1116632	1	1116288	1116632	1116456	1116632			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1118214	1119699	-	orf19.432	1118214	1119699	1	1119699	1118214	1119669	1118293		orf19.8062|IPF26870.1|IPF7719.2|Contig4-2853_0010|orf6.6501|CA4057|CaO19.8062|CaO19.432|IPF7719	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1118304	1118562	+	ntar_111	1118304	1118562	1	1118304	1118562	1118407	1118562			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1118634	1119036	+	ntar_112	1118634	1119036	1	1118634	1119036					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1119939	1122636	-	orf19.431	1119939	1122636	1	1122636	1119939	1122299	1119972		ZCF2|orf19.8061|IPF26856.1|IPF7721.2|Contig4-2853_0009|orf6.6500|CA4056|CaO19.8061|CaO19.431|IPF7721	Putative transcription factor with zinc cluster DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1123131	1123950	+	orf19.430	1123131	1123950	1	1123131	1123950	1123222	1123881		orf19.8060|IPF26882.1|IPF7723.2|Contig4-2853_0006|orf6.6499|CA4055|CaO19.430|YPT522|CaO19.8060	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1123724	1125796	-	orf19.429	1123724	1125796	1	1125796	1123724	1125735	1123924		orf19.8059|IPF26865.1|IPF7724.2|Contig4-2853_0005|orf6.6498|CA4054|TRF4|CaO19.429|CaO19.8059	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1125958	1128162	-	orf19.428	1125958	1128162	1	1128162	1125958	1128162	1125979		orf19.8058|IPF26859.1|IPF7725.2|Contig4-2853_0002|Contig4-2853_0004|orf6.6497|CA4053|CaO19.428|CaO19.8058|IKS1	Predicted ORF in Assemblies 19, 20 and 21; induced during planktonic growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1126265	1126466	+	ntar_113	1126265	1126466	1	1126265	1126466					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1128375	1133437	-	orf19.427	1128375	1133437	1	1133437	1128375	1133437	1128440		orf19.8057|IPF10231.2|Contig4-2820_0001|Contig4-2820_0003|orf6.6496|CA4052|CaO19.8057|CaO19.427|IPF10231.3f|IPF10231.exon2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1133510	1135593	-	orf19.426	1133510	1135593	1	1135593	1133510	1135564	1133510		orf19.8056|IPF26862.1|IPF10233.2|Contig4-2820_0006|orf6.6495|CA4051|CaO19.426|CaO19.8056|IPF10231.5f|IPF10231.exon1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1135789	1136407	-	orf19.425	1135789	1136407	1	1136407	1135789	1136394	1135801		orf19.8055|IPF10482.exon2|IPF26883.1|IPF20007.1|Contig4-2820_0007|orf6.6494|CA4050|CaO19.8055|CaO19.425|IPF20007	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1136436	1137156	-	orf19.424	1136436	1137156	1	1137156	1136436	1137135	1136581	TRP99	orf19.8054|orf6.6493|IPF10482.2|IPF19148.2|Contig4-2820_0008|orf6.770|CA4049|AHP12|CaO19.424|IPF10482|IPF10482.exon1	Protein described as thioredoxin peroxidase/alkyl hydroperoxide reductase; transcriptionally regulated by iron; expression greater in low iron; regulated by Gcn4p; induced in response to amino acid starvation (3-aminotriazole treatment) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1137212	1137964	+	orf19.423	1137212	1137964	1	1137212	1137964	1137366	1137923		orf19.8053|IPF26887.1|IPF10483.2|Contig4-2820_0009|orf6.6492|orf6.771|CA0179|DCP1|CaO19.423	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1138223	1140710	+	orf19.422	1138223	1140710	1	1138223	1140710	1138330	1140585	SPT20	orf19.8052|IPF18537.2|IPF10486.2|orf6.3893|orf6.6491|orf6.772|CA0180|CaO19.422	Protein described as a transcription factor; downregulated upon adherence to polystyrene; flucytosine repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1141047	1142880	-	orf19.419	1141047	1142880	1	1142880	1141047	1142880	1141123		orf19.8049|IPF10490.2|IPF29828.1|Contig4-2233_0002|orf6.3896|CA2124|CaO19.419|IPF10490	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	1142135	1142629	+	orf19.420	1142135	1142629	1	1142135	1142629	1142135	1142629		IPF26886.1|IPF10489.2|orf6.3895	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1143893	1148396	+	orf19.418	1143893	1148396	1	1143893	1148396	1144029	1148327	KOG1	orf19.8048|IPF4893.2|orf6.3897|YHR186|CA2125|CaO19.418|CaO19.8048|IPF4893	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; heterozygous null mutant displays sensitivity to rapamycin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1148988	1150350	+	orf19.417	1148988	1150350	1	1148988	1150350	1149163	1150212		orf19.8047|IPF26873.1|IPF4896.2|Contig4-3004_0025|orf6.3898|CA2126|CaO19.8047|MTM1|CaO19.417|IPF4896	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1150320	1151467	-	orf19.416	1150320	1151467	1	1151467	1150320	1151467	1150346		orf19.8046|IPF26874.1|IPF4897.2|Contig4-3004_0024|orf6.3899|CA2127|CaO19.416|CaO19.8046|IPF4897	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	1151619	1152563	-	orf19.415	1151619	1152563	1	1152563	1151619	1152503	1151757		orf19.8045|IPF26879.1|IPF4898.1|Contig4-3004_0021|orf6.3900|CA2128|CaO19.415|CaO19.8045|IPF4898	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1152799	1155235	+	orf19.414	1152799	1155235	1	1152799	1155235	1152818	1155091		orf19.8044|IPF26851.1|IPF4899.1|Contig4-3004_0020|orf6.3901|CA2129|CaO19.8044|RSM22|CaO19.414|IPF4899	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1155065	1155981	-	orf19.413.1	1155065	1155981	1	1155981	1155065	1155839	1155591	RPS27A	IPF4901.2|IPF29837.1|Contig4-3004_0018|CA2130	Predicted ribosomal protein S27; ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1157565	1158002	+	ntar_114	1157565	1158002	1	1157565	1158002	1157725	1157907			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1158458	1158691	-	ntar_115	1158458	1158691	1	1158691	1158458					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1158687	1161263	+	orf19.413	1158687	1161263	1	1158687	1161263	1158929	1161004		orf19.8043|orf6.2094|IPF4902.1|IPF29827.1|Contig4-3004_0013|CA0897|CaO19.413|IPF4902	Transcription is positively regulated by Sfu1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1161098	1163002	-	orf19.412	1161098	1163002	2	1163002|1162819	1162930|1161098	1162939	1161330		orf19.8042|IPF4903.2|Contig4-3004_0010|orf6.2095|CA0898|SSH1.3f|SSH1.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1163383	1164837	-	orf19.411	1163383	1164837	1	1164837	1163383	1164670	1163651		orf19.8041|IPF4905|orf6.2096|IPF26877.1|IPF4905.2|Contig4-3004_0007|CA0899|CaO19.8041|CaO19.411	Protein described as similar to GTPase regulators; possibly spurious ORF (Annotation Working Group prediction); transcriptionally regulated by iron; expression greater in low iron; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1163572	1163775	+	ntar_116	1163572	1163775	1	1163572	1163775	1163628	1163768			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1165074	1165380	+	ntar_117	1165074	1165380	1	1165074	1165380					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1165950	1166791	-	ntar_1426	1165950	1166791	2	1166791|1166462	1166716|1165950					 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1166924	1167711	+	orf19.410.3	1166924	1167711	2	1166924|1167176	1167092|1167711	1166924	1167627		IPF26888.1|IPF4908.2|Contig4-3004_0003|CA0054|RIB4|RIB4.3	Lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, DMRL synthase); catalyzes the penultimate step in the synthesis of riboflavin [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1168044	1168149	+	tn(guu)2	1168044	1168149	2	1168044|1168114	1168081|1168149				tN(GUU)2.2	tRNA-Asn predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1168236	1168338	+	tn(guu)1	1168236	1168338	2	1168236|1168303	1168273|1168338				tN(GUU)1.2	tRNA-Asn predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1168890	1168962	+	tt(agu)1	1168890	1168962	1	1168890	1168962				tT(AGU)1.2	tRNA-Thr predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1169086	1170573	-	ntar_118	1169086	1170573	1	1170573	1169086	1170573	1170313			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1169252	1173967	+	orf19.2495	1169252	1173967	1	1169252	1173967	1169252	1173967	GSL1	orf19.10031|FKS1|IPF24875.1|IPF4913.2|GSL22|Contig4-2966_0001|Contig4-2966_0003|orf6.6176|CA3812|CaO19.2495|CaO19.10031	Subunit of beta-1,3-glucan synthase; 10 predicted membrane-spanning regions; caspofungin induced; mRNA abundance declines after yeast-to-hyphal transition; similar to S. cerevisiae Fks3p; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr1	1174270	1177116	+	orf19.2494	1174270	1177116	1	1174270	1177116	1174271	1175737		orf19.10030|IPF24837.1|IPF9233.1|Contig4-2966_0004|orf6.6175|CA3811|CaO19.2494|PET112|CaO19.10030	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1175824	1177077	-	orf19.2492	1175824	1177077	1	1177077	1175824	1177077	1175824	STE3	orf19.10028|IPF24844.1|IPF9230.2|Contig4-2966_0005|orf6.6173|CA3810|CaO19.10028|CaO19.2492|IPF9230	Protein similar to S. cerevisiae Ste3p, the receptor for a-factor mating pheromone; alpha mating-type-specific transcription [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1177497	1181017	-	orf19.2489	1177497	1181017	1	1181017	1177497	1180920	1177591		orf19.10025|IPF24889.1|IPF9227.2|Contig4-2966_0006|orf6.6170|CA3809|CaO19.2489|KAP123|CaO19.10025	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1181039	1182441	-	orf19.2488	1181039	1182441	1	1182441	1181039	1182403	1181204	FAL1	orf19.10024|IPF24847.1|IPF9226.2|Contig4-2966_0007|orf6.6169|CA3808|CaO19.10024|CaO19.2488	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1182511	1183402	+	orf19.2487	1182511	1183402	1	1182511	1183402	1182555	1183313		orf19.10023|IPF24863.1|IPF9225.2|Contig4-2966_0009|orf6.6168|CA3807|CaO19.2487|CaO19.10023|IPF9225	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1183302	1187736	-	orf19.2485	1183302	1187736	1	1187736	1183302	1187646	1183366		orf19.10021|IPF24880.1|IPF9224.2|Contig4-2966_0010|Contig4-2966_0011|orf6.6166|CA3806|CaO19.2485|NUP170|CaO19.10021|IPF9224	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1188173	1189603	+	orf19.2484	1188173	1189603	1	1188173	1189603	1188231	1189484		orf19.10020|IPF24843.1|IPF12403.2|Contig4-2966_0014|orf6.6165|CA3805|CaO19.2484|CaO19.10020|IPF12403	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1189424	1190085	-	orf19.2483	1189424	1190085	1	1190085	1189424	1190013	1189582	RIM1	orf19.10019|IPF24873.1|IPF12405.2|Contig4-2966_0015|orf6.6164|CA3804|CaO19.10019|CaO19.2483	Predicted ORF in Assemblies 19, 20 and 21; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1190292	1191038	-	orf19.2481	1190292	1191038	1	1191038	1190292	1191038	1190292		orf19.10017|IPF24864.1|IPF12407.1|Contig4-2966_0017|orf6.6162|CA3803|CaO19.10017|CaO19.2481|IPF12407	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1191283	1192452	+	orf19.2480.1	1191283	1192452	3	1191283|1191617|1191749	1191442|1191664|1192452	1191631	1192122	AUT7	IPF12408.2|IPF7188.3|Contig4-2966_0018|orf6.109|CA3802|AUT7.exon2	ORF Predicted by Annotation Working Group; macrophage/pseudohyphal-repressed; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1192486	1194234	-	orf19.2479	1192486	1194234	1	1194234	1192486	1194234	1192561	UGA4	orf19.10016|IPF7194.1|IPF12411.3|Contig4-2471_0004|orf6.107|orf6.6161|CA3801|UGA40|CaO19.2479	Putative gamma-aminobutyric acid/polyamine permease; nitrogen catabolite repressed gene, induced in absence of preferred N sources; transcriptionally induced upon phagocytosis by macrophage; gene regulation by nitrogen source requires Gat1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	1195183	1197114	+	orf19.2478.1	1195183	1197114	3	1195183|1195817|1196132	1195228|1195907|1197114	1195221	1196758		IPF7197.2|IPF16942.2|Contig4-2471_0002|orf6.4956|CA3800|RPL7A.3f|RPL7A.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1196975	1198230	-	orf19.2478	1196975	1198230	1	1198230	1196975	1198188	1197046		orf19.10015|IPF7198.1|IPF16941.2|Contig4-2471_0001|orf6.4957|orf6.6160|CA3799|CaO19.2478|IPF7198	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1198336	1203538	-	orf19.2476	1198336	1203538	1	1203538	1198336	1203457	1198403		orf19.10013|IPF24871.1|IPF7201.2|Contig4-2471_0005|orf6.4959|orf6.6159|CA2884|CaO19.2476|IPF7201	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1203590	1203921	+	ntar_119	1203590	1203921	1	1203590	1203921	1203590	1203859			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1203688	1204754	-	orf19.2475	1203688	1204754	1	1204754	1203688	1204573	1204178	PGA26	orf19.10012|orf6.4960|IPF24884.1|IPF7204.2|Contig4-2954_0019|CA2885|CaO19.10012|CaO19.2475|IPF7204	Putative GPI-anchored protein of unknown function; transcriptionally regulated by iron; expression greater in high iron; induced during cell wall regeneration; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1205343	1205560	+	ntar_120	1205343	1205560	1	1205343	1205560					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1205966	1207881	-	orf19.2474	1205966	1207881	1	1207881	1205966	1207750	1206098	PRC3	orf19.10011|IPF7205.2|IPF29082.1|Contig4-2954_0018|orf6.230|orf6.4961|CA0035|CPY2|CaO19.2474	Transcription is regulated by Nrg1p and Mig1p; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1208447	1210541	+	orf19.2473	1208447	1210541	1	1208447	1210541	1208547	1210451		orf19.10010|IPF24831.1|IPF7207.2|IPF7207|Contig4-2954_0014|orf6.4962|CA2886|CaO19.2473|CaO19.10010	Decreased transcription is observed upon fluphenazine treatment or in an azole-resistant strain that overexpresses CDR1 and CDR2 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1210663	1211092	+	orf19.2472.1	1210663	1211092	1	1210663	1211092	1210733	1210942			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1210934	1211792	-	orf19.2472	1210934	1211792	1	1211792	1210934	1211754	1211062		orf19.10009|IPF24865.1|IPF13631.1|Contig4-2954_0012|orf6.4963|CA2887|CaO19.2472|CaO19.10009|IPF13631	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1211870	1212493	+	orf19.2471	1211870	1212493	1	1211870	1212493	1211899	1212375	GIM5	orf19.10008|IPF24870.1|IPF13630.1|Contig4-2954_0011|orf6.4964|CA2888|CaO19.2471|CaO19.10008	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed gene and macrophage-induced protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1212358	1213445	-	orf19.2469	1212358	1213445	1	1213445	1212358	1213425	1212409	RAD10	orf19.10006|IPF24857.1|IPF13628.1|Contig4-2954_0010|orf6.4966|CA2889|CaO19.2469|ERC1|CaO19.10006|IPF13628	Ortholog of S. cerevisiae RAD10, an endonuclease involved in nucleotide excision repair; null mutant is extremely sensitive to UV irradiation; transcription is downregulated in alkaline conditions [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1213982	1214902	+	orf19.2468	1213982	1214902	1	1213982	1214902	1213982	1214902		orf19.10005|IPF6685.3|IPF13626.2|Contig4-2954_0008|orf6.250|orf6.4967|CA2890|TMT1|CaO19.2468|IPF13626	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1215228	1216520	+	orf19.2467	1215228	1216520	1	1215228	1216520	1215353	1216498	PRN1	orf19.10004|IPF13624.2|IPF6686.2|Contig4-2954_0007|orf6.251|orf6.4968|CA2891|IFS4|PIRIN-1|CaO19.2467	Protein with similarity to pirins; increased transcription is observed upon benomyl treatment and in response to alpha pheromone in SpiderM medium; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1216778	1218096	+	orf19.2465	1216778	1218096	1	1216778	1218096	1216800	1218017	POL32	orf19.10002|IPF24845.1|IPF6688.2|Contig4-2954_0004|orf6.4970|CA2892|CaO19.2465|CaO19.10002|IPF6688	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1218205	1219372	+	orf19.2463	1218205	1219372	1	1218205	1219372	1218316	1219317	PRN2	orf19.10000|IPF24858.1|IPF6690.2|Contig4-2954_0003|orf6.4972|CA2893|CaO19.10000|CaO19.2463|IFS3	Predicted ORF in Assemblies 19, 20 and 21; similar to pirin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1219643	1220882	+	orf19.2462	1219643	1220882	1	1219643	1220882	1219834	1220814	PRN3	orf19.9999|IPF24854.1|IPF6691.1|Contig4-2954_0001|orf6.4973|CA2894|CaO19.2462|IFS2	Predicted ORF in Assemblies 19, 20 and 21; similar to pirin; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1221320	1222663	+	orf19.2461	1221320	1222663	1	1221320	1222663	1221590	1222576	PRN4	orf19.9998|IPF24852.1|IPF6694.2|Contig4-2709_0011|orf6.4974|CA2895|IFS1|CaO19.2461|CaO19.9998	Protein with similarity to pirins; increased transcription is observed upon benomyl treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1223688	1225228	+	orf19.2460	1223688	1225228	1	1223688	1225228	1223738	1224793		orf19.9997|IPF6696.2|IPF18403.2|Contig4-2709_0008|orf6.3562|orf6.4975|CA1873|CaO19.2460|IPF6696	Predicted ORF in Assemblies 19, 20 and 21; exogenously expressed protein is a substrate for Kex2p processing in vitro; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1226421	1229872	+	orf19.2459	1226421	1229872	1	1226421	1229872	1226736	1229654		orf19.9996|IPF24817.1|IPF6700.2|Contig4-2709_0005|orf6.3561|CA1872|CaO19.2459|CaO19.9996|IPF6700	Putative protein of unknown function; mRNA binds to She3p; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1231114	1233040	+	orf19.2458	1231114	1233040	1	1231114	1233040	1231428	1232969		orf19.9995|IPF18595.1|IPF6704.2|Contig4-2709_0001|orf6.266|orf6.3559|orf6.3560|CA1871|SIP5|CaO19.2458|IPF16981|CA1870|IPF16981.exon2|IPF16981.2|IPF16981.exon1	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1236231	1238527	+	orf19.2457	1236231	1238527	1	1236231	1238527	1236354	1238429		orf19.9993|IPF15822.2|IPF19473.2|orf6.34|orf6.3558|CA1869|CaO19.2457|IPF15822	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1238405	1242092	-	orf19.2455	1238405	1242092	1	1242092	1238405	1241973	1238578		orf19.9992|IPF18597.2|IPF24840.1|IPF29084.1|IPF14501.3|Contig4-2518_0001|orf6.1539|orf6.33|orf6.3557|orf6.373|CA0547|CA1868|orf19.2456|IPF14501.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1242794	1243551	-	ntar_121	1242794	1243551	1	1243551	1242794					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1243990	1244422	+	ntar_122	1243990	1244422	1	1243990	1244422					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1244534	1247879	+	orf19.2454	1244534	1247879	1	1244534	1247879	1244696	1247716	PHO87	orf19.9990|orf6.1540|PHO98|IPF19824.2|IPF14853.2|Contig4-2200_0003|Contig4-2200_0004|Contig4-2200_0005|orf6.104|orf6.293|CA0548|CaO19.2454|CA0015|PHO87.5eoc|IPF19824.1	Protein similar to phosphate permeases; transcription is negatively regulated by Rim101p at pH 8; expression is regulated upon white-opaque switching; caspofungin repressed; biofilm-regulated; virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1248065	1249905	-	orf19.2452	1248065	1249905	1	1249905	1248065	1249509	1248262		orf19.9988|orf6.1246|IPF14850.2|IPF14849.3|Contig4-2200_0007|Contig4-2200_0010|orf6.294|CA0046|CaO19.2452|IPF14850	Transcriptionally regulated by iron; expression greater in high iron; downregulated in core caspofungin response; ketoconazole-repressed; shows colony morphology-related gene regulation by Ssn6p; possibly subject to Kex2p processing [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1251400	1253230	+	orf19.2451	1251400	1253230	1	1251400	1253230	1251599	1252987	PGA45	orf19.9987|IPF19428.2|IPF14109.2|Contig4-1947_0002|orf6.1247|orf6.143|CA0380|CaO19.2451|IPF14109	Cell wall protein; putative GPI-anchor; downregulated in core caspofungin response; Hog1p-induced; regulated by Ssn6p; Mob2p-dependent hyphal regulation; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1254890	1256662	+	orf19.2449	1254890	1256662	1	1254890	1256662	1254890	1256662		orf19.9985|IPF14107.2|IPF7471.3|Contig4-2783_0009|orf6.1249|CA0788|CaO19.2449|IPF14107|orf6.1922	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; macrophage-induced gene [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1257029	1259362	+	orf19.2447	1257029	1259362	1	1257029	1259362	1257154	1259244		orf19.9983|IPF24830.1|IPF7472.1|Contig4-2783_0008|orf6.1920|CA0787|CaO19.2447|CaO19.9983|IPF7472	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1259137	1260575	-	orf19.2446	1259137	1260575	1	1260575	1259137	1260405	1259335		orf19.9982|IPF24855.1|IPF7473.1|Contig4-2783_0007|orf6.1919|CA0786|CaO19.9982|CaO19.2446|IPF7473	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1261730	1263376	+	orf19.2445	1261730	1263376	1	1261730	1263376	1261730	1263376		orf19.9981|IPF24835.1|IPF7474.3|DIP51|Contig4-2783_0004|orf6.1918|orf6.3623|DIP5|CA1922|DIP52|CaO19.2445|IPF7474.2	[NOT TRANSCRIBED?] Putative dicarboxylic amino acid permease; fungal-specific (no human or murine homolog); transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1263826	1264960	+	orf19.2444	1263826	1264960	1	1263826	1264960	1263887	1264819	CHS7	orf19.9980|IPF24859.1|IPF7475.2|Contig4-2783_0003|orf6.3622|CA1921|CaO19.9980|CaO19.2444|IPF7475	Protein required for wild-type chitin synthase III activity; similar to (but not functional homolog of) S. cerevisiae Chs7p, which effects ER export of Chs3p; induced in homozygous cyr1 null mutant hyphae and ras1 yeast-form cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1265312	1267673	+	orf19.2443	1265312	1267673	1	1265312	1267673	1265549	1267582	RGD1	orf19.9979|orf6.3621|IPF24828.1|IPF7476.2|Contig4-2783_0001|CA1920|CaO19.2443|CaO19.9979|IPF7476	Protein described as a GTPase activator; transcriptionally regulated by iron; expression greater in low iron; alkaline upregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1267600	1268514	-	orf19.2442	1267600	1268514	1	1268514	1267600	1268401	1267601		orf19.9978|IPF24861.1|IPF7477.2|IPF7477|orf6.3620|CA1919|CaO19.9978|CaO19.2442	Decreased transcription is observed in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1268576	1271291	+	orf19.2440	1268576	1271291	1	1268576	1271291	1268667	1271219		orf19.9976|orf19.9977|IPF24850.1|IPF24836.1|IPF7479.2|IPF7478.2|orf6.3618|orf6.3619|CA1917|CA1918|orf19.2441|IPF7479.3f	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1271173	1271745	-	orf19.2439.1	1271173	1271745	2	1271745|1271579	1271685|1271173	1271693	1271352		IPF24823.1|IPF16566.2|CA1916|IPF16566.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1271967	1272685	-	orf19.2439	1271967	1272685	1	1272685	1271967	1272642	1272208		orf19.9975|IPF24877.1|IPF16565.1|Contig4-2388_0002|orf6.3617|CA1915|CaO19.2439|ACP12|CaO19.9975|IPF16565	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1272835	1273510	+	orf19.2438	1272835	1273510	1	1272835	1273510	1272885	1273427		orf19.9974|IPF24866.1|IPF16564.1|Contig4-2388_0004|orf6.3616|CA1914|CaO19.9974|MRPS12|CaO19.2438|IPF16564	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1273410	1274594	-	orf19.2437	1273410	1274594	1	1274594	1273410	1274555	1273515	ARC35	orf19.9973|IPF24856.1|IPF16563.2|Contig4-2388_0006|orf6.3615|CA1913|CaO19.2437|CaO19.9973	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p; mutation confers hypersensitivity to cytochalasin D [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1274799	1277841	-	orf19.2436	1274799	1277841	1	1277841	1274799	1277567	1274919		orf19.9972|IPF24821.1|IPF13772.2|Contig4-2388_0008|orf6.3614|CA1912|SKY1|CaO19.9972|CaO19.2436	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1278550	1280804	-	orf19.2435	1278550	1280804	1	1280804	1278550	1280738	1278633	MSI3	orf19.9971|orf6.760|SSE1|IPF24829.1|IPF13776.3|orf6.3613|CA1911|CaO19.2435|IPF13776.2	Protein of the HSP70 family; antigenic; functional homolog of S. cerevisiae Msi3p; physically interacts (by 2-hybrid) with Cgr1p; transcriptionally regulated by iron; expression greater in high iron; farnesol downregulated in biofilm [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1281093	1283039	-	orf19.2434	1281093	1283039	1	1283039	1281093	1282994	1281198	NPL4	orf19.9970|IPF19684.1|IPF15600.2|Contig4-2898_0001|orf6.1397|orf6.761|CA0175|CaO19.2434	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1283124	1283839	-	orf19.2433	1283124	1283839	1	1283839	1283124	1283769	1283140		orf19.9969|IPF17719.1|IPF15601.1|Contig4-2898_0002|orf6.1396|orf6.762|CA0458|CaO19.2433|IPF15601	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1284338	1285921	-	orf19.2432	1284338	1285921	2	1285921|1284420	1284440|1284338	1285460	1284338	HAC1	orf19.9968|IPF24851.1|IPF15604.1|Contig4-2898_0003|orf6.1395|CA0457|CaO19.2432|CaO19.9968|IPF15604	Putative transcription factor involved in unfolded protein response and control of morphology; transcript undergoes atypical splicing at C terminus under ER stress; induced during mating and by caspofungin; mRNA binds She3p [label_first_exon=CGDmod label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1286014	1286424	-	orf19.2431	1286014	1286424	1	1286424	1286014	1286424	1286083		orf19.9967|IPF24888.1|IPF29100.1|orf6.1394|CaO19.2431|CaO19.9967	Dubious open reading frame, not conserved in Candida species; transcription is induced in response to alpha pheromone in SpiderM medium; mRNA binds She3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1286804	1287167	+	ntar_123	1286804	1287167	1	1286804	1287167	1287018	1287167			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1288962	1289687	+	orf19.2430	1288962	1289687	1	1288962	1289687	1288962	1289687		orf19.9966|IPF19414.2|IPF16122.1|Contig4-2898_0010|orf6.1393|orf6.169|LPF19|CaO19.2430	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1289718	1291073	+	orf19.2429	1289718	1291073	1	1289718	1291073	1289718	1291073		orf19.9965|IPF24841.1|IPF19572.1|IPF19573.1|Contig4-2898_0011|orf6.333|orf6.1392|CA0053|orf19.380|CaO19.9965|LPF18|CaO19.2429	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1291710	1292041	-	ntar_124	1291710	1292041	1	1292041	1291710					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1292869	1293864	+	orf19.2661	1292869	1293864	1	1292869	1293864	1292869	1293864	TLO34	IPF11534.1|IPF17380.2|Contig4-1945_0002|Contig4-2584_0004|Contig4-2753_0010|Contig4-2898_0012|Contig4-2956_0007|orf6.334|orf6.434|orf6.1466|CA0498|CA0078|orf19.631|orf19.381|CaO19.2661|CTA218|CTA211.3f	Non-telomeric member of a family of telomere-proximal genes of unknown function; predicted N-terminus is extended, relative to that of other family members [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr1	1293072	1293677	-	orf19.2662	1293072	1293677	1	1293677	1293072	1293677	1293072		IPF11536.1|orf6.1467|CaO19.2662|ATC218	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1294318	1297038	+	orf19.2663	1294318	1297038	1	1294318	1297038	1294913	1296667		orf19.9388|IPF25503.1|IPF14507.3|IPF11533.1|Contig4-2753_0011|orf6.3436|orf6.1468|CA0499|orf19.1829|LPF20|CaO19.2663|IFA9	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1296767	1297043	-	ntar_125	1296767	1297043	1	1297043	1296767					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1297193	1298596	+	orf19.1828	1297193	1298596	1	1297193	1298596	1297270	1298319	BUD16	orf19.9387|IPF25500.1|IPF14508.2|Contig4-2753_0012|orf6.3435|CA1781|CaO19.1828|CaO19.9387|IPF14508	Protein similar to S. cerevisiae Bud16p; induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1298462	1299820	-	orf19.1827	1298462	1299820	1	1299820	1298462	1299820	1298462		orf19.9386|IPF25499.1|IPF14509.2|Contig4-2753_0014|orf6.3434|CA1780|CaO19.9386|CaO19.1827|IPF14509	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1300582	1302956	-	orf19.1826	1300582	1302956	1	1302956	1300582	1302625	1300757	MDM34	orf19.9385|IPF25496.1|IPF14510.2|Contig4-2618_0001|Contig4-2753_0016|orf6.3433|CA1779|CaO19.1826|CaO19.9385|IPF14510	Putative transcription factor with zinc finger DNA-binding motif; macrophage-downregulated gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1306306	1308657	+	orf19.1825	1306306	1308657	1	1306306	1308657	1306306	1308531		orf19.9384|IPF13810|IPF25495.1|IPF13810.2|Contig4-2618_0004|orf6.1511|orf6.3432|CA1778|CaO19.9384|CaO19.1825|IPF13810.3	[NOT TRANSCRIBED?] Protein not essential for viability; filament induced; regulated by Nrg1p, Rfg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1309559	1310488	+	orf19.1824	1309559	1310488	1	1309559	1310488	1309559	1310488	PGA50	orf19.9383|IPF25501.1|IPF14706.2|Contig4-2618_0008|orf6.3431|CA1777|CaO19.9383|CaO19.1824|IPF14706	Putative GPI-anchored protein of unknown function [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1310758	1313731	+	orf19.1823	1310758	1313731	1	1310758	1313731	1310872	1313613		orf19.9382|IPF14704|IPF25493.1|IPF14704.2|Contig4-2618_0011|Contig4-2618_0014|orf6.1325|orf6.3430|CA1776|CaO19.1823	Predicted ORF in Assemblies 19, 20 and 21; transcription is downregulated in response to treatment with ciclopirox olamine [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1313907	1314266	+	ntar_126	1313907	1314266	1	1313907	1314266					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1314494	1317025	-	orf19.1822	1314494	1317025	1	1317025	1314494	1317025	1314494	UME6	orf19.9381|IPF15273.2|IPF14703.2|Contig4-1197_0003|orf6.1326|orf6.3429|CA0423|CaO19.1822|IPF15273	Transcription factor; required for wild-type hyphal extension, virulence; zinc cluster DNA-binding motif; similar to S. cerevisiae Ume6p, which is a meiotic regulator; alkaline upregulated; filament induced; regulated by Nrg1p, Tup1p, RFG1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1324514	1324825	-	orf19.1821	1324514	1324825	1	1324825	1324514	1324825	1324514		orf19.9380|IPF25509.1|IPF29296.1|orf6.1209|CaO19.9380|CaO19.1821	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1334471	1334753	+	ntar_127	1334471	1334753	1	1334471	1334753					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1337508	1340227	+	orf19.177	1337508	1340227	1	1337508	1340227	1337672	1340068		orf19.13660|orf19.7810|IPF27140.1|IPF15923.2|IPF20924.1|IPF11945.2|orf6.679|orf6.6040|CA0151|CA3703|orf19.6281|IPF15923.5eoc	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1340369	1340722	+	orf19.6280	1340369	1340722	1	1340369	1340722	1340369	1340722		orf19.13659|IPF20954.1|IPF27787.1|orf6.6039|CaO19.13659|CaO19.6280	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1343993	1344599	+	ntar_128	1343993	1344599	1	1343993	1344599					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1344770	1348341	+	orf19.6277	1344770	1348341	1	1344770	1348341	1344908	1348267		orf19.13656|orf19.13658|IPF19586.1|IPF19587.2|orf6.501|orf6.6038|CA3701|CA3702|orf19.6279|IPF11936.3f|orf6.6036	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1350390	1350606	+	ntar_129	1350390	1350606	1	1350390	1350606					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1350853	1353640	+	orf19.6276	1350853	1353640	1	1350853	1353640	1350853	1353474		orf19.13655|IPF20884.1|IPF4859.2|Contig4-2377_0008|orf6.6035|CA3700|CaO19.6276|CaO19.13655|IPF4859	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	1354052	1355749	+	orf19.6275	1354052	1355749	1	1354052	1355749	1354052	1355749		orf19.13654|IPF20904.1|IPF4860.1|Contig4-2377_0002|Contig4-2377_0004|orf6.6034|CA3699|CaO19.13654|CaO19.6275|IPF4860	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr1	1356578	1357373	-	orf19.6274	1356578	1357373	1	1357373	1356578	1357330	1356803	PBR1	orf19.13653|IPF20933.1|IPF4861.1|Contig4-2683_0016|orf6.6033|CA3698|CaO19.6274|CaO19.13653|IPF4861	Protein required for cohesion, adhesion, and biofilm formation; induced by alpha pheromone in white cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1358770	1359775	-	orf19.6273	1358770	1359775	1	1359775	1358770	1359770	1359447		orf19.13652|IPF4865.1|IPF27790.1|Contig4-2683_0013|orf6.6032|CaO19.13652|CaO19.6273	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1359971	1361046	+	orf19.6272	1359971	1361046	1	1359971	1361046	1360018	1360794		orf19.13651|IPF4866.1|IPF27771.1|Contig4-2683_0012|orf6.6031|CA3697|YUH1|CaO19.6272|IPF4866	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1360739	1363376	-	orf19.6271	1360739	1363376	1	1363376	1360739	1363202	1361070		orf19.13650|IPF4868.1|IPF27760.1|Contig4-2683_0009|orf6.6030|CA3696|CaO19.6271|IPF4868	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1364433	1367174	+	orf19.6269	1364433	1367174	1	1364433	1367174	1364477	1367062		orf19.13648|orf19.13649|IPF20912.1|IPF4873.2|Contig4-2683_0004|Contig4-2683_0006|orf6.6028|orf6.6029|CA3694|CA3695|orf19.6270|IPF4872.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1367091	1369525	-	orf19.6268	1367091	1369525	1	1369525	1367091	1369348	1367174		orf19.13647|IPF20895.1|IPF4874.2|Contig4-2683_0002|orf6.6027|CA3693|CaO19.13647|CaO19.6268|IPF4874	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1370850	1372217	-	orf19.6267	1370850	1372217	1	1372217	1370850	1372217	1370850		orf19.13646|IPF4876|IPF20913.1|IPF4876.2|Contig4-2747_0018|orf6.6026|CA3692|CaO19.13646|HRQ3|CaO19.6267	Protein not essential for viability [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1372774	1375485	-	orf19.6266	1372774	1375485	1	1375485	1372774	1375483	1372868		orf19.13645|IPF20885.1|IPF4880.2|Contig4-2747_0014|Contig4-2747_0015|Contig4-2747_0016|orf6.6025|CA3691|CaO19.6266|CaO19.13645|IPF4880	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1375744	1376785	-	orf19.6265.1	1375744	1376785	2	1376785|1376301	1376732|1375744	1376741	1375913	RPS14B	IPF20952.1|IPF4881.1|Contig4-2747_0012|CA3690|RPS14	Putative ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; transcription is positively regulated by Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1377035	1377529	-	orf19.6265	1377035	1377529	1	1377529	1377035	1377498	1377106	RPS22A	orf19.13644|IPF20939.1|IPF4882.2|Contig4-2747_0010|orf6.6024|CA3689|RPS22|CaO19.6265|CaO19.13644	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1377722	1378625	+	orf19.6264.4	1377722	1378625	2	1377722|1378119	1377887|1378625	1377882	1378268		IPF20908.1|IPF27767.1	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1378483	1379422	-	orf19.6264.3	1378483	1379422	2	1379422|1379188	1379270|1378483	1379293	1378685		IPF20936.1|IPF4885.1|Contig4-2747_0006|orf6.6072|CA3688|YIP3|YIP3.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1379833	1380253	-	ntar_130	1379833	1380253	1	1380253	1379833	1380144	1379923			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1380365	1381401	+	orf19.6264	1380365	1381401	1	1380365	1381401	1380462	1381178		orf19.13643|IPF20926.1|IPF4889.2|Contig4-2747_0003|orf6.6023|CA3687|CaO19.13643|CaO19.6264|IPF4889	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1381182	1382664	-	orf19.6263	1381182	1382664	1	1382664	1381182	1382602	1381205		orf19.13642|IPF4890.2|IPF18757.2|Contig4-2747_0002|orf6.6022|CA3686|CaO19.13642|CaO19.6263|IPF4890	Predicted membrane transporter, member of the monocarboxylate porter (MCP) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1382841	1389718	-	orf19.6261	1382841	1389718	1	1389718	1382841	1389718	1382897	BPH1	orf19.13640|IPF20927.1|IPF19723.1|Contig4-2747_0021|orf6.111|orf6.2456|orf6.301|CA1123|CaO19.6261|IPF19723	Protein not essential for viability; similar to S. cerevisiae Bph1p, which is a putative ortholog of human Chediak-Higashi syndrome protein and murine beige gene implicated in disease syndromes involving defective lysosomal trafficking [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	1390173	1394538	-	orf19.6260	1390173	1394538	1	1394538	1390173	1394401	1390283		orf19.13639|IPF19349.2|IPF12859.2|Contig4-2735_0006|orf6.2457|CA1124|UBP12|CaO19.6260	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1394979	1396220	-	orf19.6259	1394979	1396220	1	1396220	1394979	1396220	1395099		orf19.13638|IPF12718.3|IPF12854.2|Contig4-2735_0003|orf6.2458|orf6.654|CA1125|CaO19.6259|RRP43	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1397888	1404671	+	orf19.6257	1397888	1404671	1	1397888	1404671	1398250	1404630	GLT1	orf19.13636|IPF20929.1|IPF19715.2|orf6.2272|orf6.655|CA1010|CaO19.6257|GLT1.3eoc|IPF19715.1	Putative glutamate synthase; alkaline downregulated; transcription is downregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1404849	1406663	+	orf19.6255	1404849	1406663	1	1404849	1406663	1404890	1406203		orf19.13634|IPF20914.1|IPF14084.1|Contig4-2748_0008|orf6.2270|CA1009|CaO19.13634|CaO19.6255|IPF14084	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1406978	1408563	+	orf19.6254	1406978	1408563	1	1406978	1408563	1407331	1408368	ANT1	orf19.13633|IPF20920.1|IPF14083.2|Contig4-2748_0006|orf6.2269|CA1008|CaO19.6254|CaO19.13633|IPF14083	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1409014	1409688	+	orf19.6253	1409014	1409688	1	1409014	1409688	1409046	1409483	RPS23A	orf19.13632|IPF13519.1|IPF14082.3|Contig4-2748_0005|orf6.1570|orf6.2268|CA0567|CaO19.6253|RPS23|RPS23.5f	Putative ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1409669	1411539	-	orf19.6252	1409669	1411539	1	1411539	1409669	1411044	1409842		orf19.13630|IPF20915.1|IPF13522.2|Contig4-2748_0004|orf6.1568|CA0566|CaO19.13630|CaO19.6252|IPF13522	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1411643	1413043	+	orf19.6250	1411643	1413043	1	1411643	1413043	1411731	1412774		orf19.13628|IPF20917.1|IPF13526.2|Contig4-2748_0002|orf6.1566|CA0565|SCD6|CaO19.6250|CaO19.13628|IPF13526	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1413053	1415600	-	orf19.6249	1413053	1415600	1	1415600	1413053	1415515	1413089	HAK1	orf19.13627|IPF20886.1|IPF9136.3|Contig4-2748_0001|Contig4-2748_0010|orf6.1565|orf6.2201|CA0966|IPF9136|IPF9136.5eoc|IPF9136.2	Putative potassium transporter; similar to Schwanniomyces occidentalis Hak1p; amphotericin B induced; transcriptionally induced upon phagocytosis by macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1417268	1417969	-	orf19.6248	1417268	1417969	1	1417969	1417268	1417969	1417268		orf19.13626|IPF20925.1|IPF9139.2|Contig4-2382_0002|orf6.2200|CA0965|CaO19.6248|IPF9139	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1418502	1421375	+	orf19.6247	1418502	1421375	1	1418502	1421375	1418596	1421211		orf19.13625|IPF20880.1|IPF9141.2|Contig4-2635_0014|orf6.2199|CA0964|CTF4|CaO19.6247|IPF9141	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1421138	1421826	-	ntar_131	1421138	1421826	1	1421826	1421138	1421581	1421438			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1421770	1422680	+	orf19.6246	1421770	1422680	1	1421770	1422680	1421911	1422477		orf19.13624|IPF20930.1|IPF9143.1|Contig4-2635_0010|orf6.2198|CA0963|CaO19.6246|NAT3|CaO19.13624|IPF9143	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1422244	1422496	-	ntar_132	1422244	1422496	1	1422496	1422244					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1422967	1424785	+	orf19.6245	1422967	1424785	1	1422967	1424785	1422978	1424678		orf19.13623|IPF19079.2|IPF9145.2|Contig4-2635_0007|orf6.2197|orf6.985|CA0962|CaO19.6245|IPF9145	Predicted ORF in Assemblies 19, 20 and 21; regulated by osmotic stress (via Hog1p) and oxidative stress (Hog1p- and Cap1p-independent); transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1424364	1424585	-	ntar_133	1424364	1424585	1	1424585	1424364	1424585	1424364			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1425038	1427781	+	orf19.6244	1425038	1427781	1	1425038	1427781	1425396	1427717		orf19.13622|IPF9146.2|IPF18817.2|Contig4-2635_0006|orf6.2196|orf6.672|orf6.984|CA0251|IFH1|CaO19.6244|IPF9146	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1427944	1431149	+	orf19.6243	1427944	1431149	1	1427944	1431149	1427968	1431030	VPS34	orf19.13621|IPF17928.3|IPF17276.2|Contig4-2635_0002|Contig4-2635_0003|orf6.5115|orf6.673|orf6.983|CA0149|CaO19.6243	Autophosphorylated phosphatidylinositol 3-kinase, class III, required for wild-type vesicle transport, hyphal growth, adherence to fibroblasts, and virulence in mouse systemic infection; low abundance mRNA, growth-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1431455	1432983	+	orf19.6242	1431455	1432983	1	1431455	1432983	1432024	1432983		IPF15741.2|IPF19190.1|orf6.5116|orf6.674|CA3003|CYK3|CaO19.6242|IPF15741.5f|IPF15741	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1432991	1435243	+	orf19.6240	1432991	1435243	1	1432991	1435243	1433503	1435086		orf19.13620|IPF15741.2|IPF19687.2|orf6.904|orf6.5116|CA6304|CA6308|orf19.6241|IPF15741.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1435382	1436528	+	orf19.6239	1435382	1436528	1	1435382	1436528	1435444	1436475		orf19.13619|IPF15293.1|IPF15740.2|Contig4-1996_0006|orf6.5117|orf6.903|CA3004|KIN28|CaO19.6239	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1436376	1437759	-	orf19.6238	1436376	1437759	1	1437759	1436376	1437711	1436509		orf19.13618|IPF20916.1|IPF15294.2|Contig4-1996_0005|orf6.5118|orf6.902|CA0218|CaO19.6238|IPF15294	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1439922	1441494	+	orf19.6237	1439922	1441494	1	1439922	1441494	1440150	1440860	RAC1	orf19.13617|IPF19967.1|IPF27772.1|Contig4-2906_0002|Contig4-2906_0003|orf6.5119|CA3005|CaO19.6237|CDC422|CaO19.13617|CC43	G-protein of RAC subfamily; required for embedded filamentous growth, but not for serum-induced hyphal growth; dynamic localization at plasma membrane; similar to, but not interchangeable with, Cdc42p; lacks S. cerevisiae homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1441238	1442176	-	orf19.6236	1441238	1442176	1	1442176	1441238	1442123	1441494		orf19.13616|IPF12152.1|IPF12514.2|Contig4-2906_0005|orf6.5120|CA3006|CaO19.6236|IPF12152	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1442300	1442943	+	orf19.6235	1442300	1442943	1	1442300	1442943	1442352	1442738		orf19.13615|IPF12150.1|IPF12515.2|Contig4-2906_0006|orf6.1583|orf6.5121|CaO19.6235	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1442798	1444495	-	orf19.6234	1442798	1444495	1	1444495	1442798	1444495	1442891		orf19.13614|IPF12148.1|IPF12516.1|Contig4-2906_0007|orf6.1584|orf6.5122|CA3007|CaO19.6234|IPF12148	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1444504	1446115	+	orf19.6233	1444504	1446115	1	1444504	1446115	1444504	1446027		orf19.13613|IPF12147.2|IPF12518.1|Contig4-1351_0001|Contig4-1351_0002|Contig4-2906_0010|orf6.1585|orf6.5123|CA3008|CaO19.6233|IPF12147	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1446885	1449859	+	orf19.6232	1446885	1449859	1	1446885	1449859	1447186	1449687	NPR1	orf19.13612|IPF20888.1|IPF12521.2|Contig4-2906_0015|orf6.1586|orf6.5124|CA0576|CaO19.6232	Predicted ORF in Assemblies 19, 20 and 21; induced in core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1449779	1450444	-	orf19.6231	1449779	1450444	1	1450444	1449779	1450368	1449937	MRPL19	orf19.13611|IPF14569.2|IPF12523.3|Contig4-2906_0017|orf6.1587|orf6.5125|CA3009|CaO19.6231	Protein described as a ribosomal protein; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1450611	1451861	+	orf19.6230	1450611	1451861	1	1450611	1451861	1450648	1451823		orf19.13610|IPF14568.2|IPF18936.2|Contig4-2906_0018|orf6.5126|CA3010|CaO19.6230|RAI1|CaO19.13610|IPF14568	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1453252	1455073	+	orf19.6229	1453252	1455073	1	1453252	1455073	1453415	1454872	CAT1	orf19.13609|CCT1|CCT|orf6.5127|CTA1|IPF20907.1|IPF20124.1|Contig4-1984_0001|Contig4-2906_0020|CA3011|CaO19.13609|CaO19.6229	Catalase; role in resistance to oxidative stress, neutrophils, peroxide; role in murine systemic virulence; regulated by iron, ciclopirox olamine, fluconazole, growth, carbon source, pH, Rim101p, Ssn6p, Hog1p, farnesol, core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1455437	1456730	+	orf19.6227	1455437	1456730	1	1455437	1456730	1455604	1456596		orf19.13607|IPF20919.1|IPF14013.2|Contig4-1851_0006|Contig4-1851_0008|orf6.5129|CA3012|CaO19.13607|CaO19.6227|IPF14013	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1456893	1458031	+	ntar_134	1456893	1458031	1	1456893	1458031					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1457026	1458175	-	orf19.6225.1	1457026	1458175	1	1458175	1457026	1457571	1457278		IPF20970.1|IPF20125.1|Contig4-1851_0004|CA3013|PET117	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1458782	1461611	+	orf19.6225	1458782	1461611	1	1458782	1461611	1459337	1461391	PCL7	orf19.13605|IPF11915.2|IPF18998.2|Contig4-2759_0013|orf6.1290|orf6.5131|CA3014|CaO19.6225|IPF11915	Protein described as cyclin-like, possible Pho85p cyclin; hyphal downregulated; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1462779	1464272	+	orf19.6224	1462779	1464272	1	1462779	1464272	1462779	1464272		orf19.13604|IPF20910.1|IPF11914.1|Contig4-2759_0009|orf6.1289|CA0401|CaO19.6224|RSB14|CaO19.13604|RTA1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr1	1464285	1464830	-	orf19.6222.1	1464285	1464830	1	1464830	1464285	1464706	1464503			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1465246	1468296	-	orf19.6222	1465246	1468296	4	1468296|1468187|1465496|1465329	1468248|1465580|1465409|1465246	1468296	1465246	SPO22	orf19.13603|IPF7423.3|IPF27762.1|Contig4-2759_0006|orf6.4534|orf6.1288|CA6303|CA0400|orf19.6223|IPF7423.5f	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Spo22p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1468392	1469495	-	orf19.6220.4	1468392	1469495	2	1469495|1468865	1469308|1468392	1469344	1468534		IPF20959.1|IPF7424.1|Contig4-2759_0004|CA2579|RPL34B.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1469531	1470343	-	orf19.6220.3	1469531	1470343	3	1470343|1470184|1470034	1470263|1470124|1469531	1470343	1469706	MMD1	IPF20961.1|IPF7427.2|CA2578|MMD1.3	ORF Predicted by Annotation Working Group; macrophage-downregulated protein abundance [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1470501	1473313	-	orf19.6220	1470501	1473313	1	1473313	1470501	1473250	1470554		orf19.13601|IPF20879.1|IPF7430.2|orf6.4532|CA2577|CaO19.13601|CAF130|CaO19.6220|IPF7430	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1473411	1475045	-	orf19.6219	1473411	1475045	1	1475045	1473411	1474919	1473564		orf19.13600|IPF20909.1|IPF7432.2|Contig4-2632_0002|orf6.4531|CA2576|CaO19.6219|CaO19.13600|IPF7432	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1475533	1479772	+	orf19.6217	1475533	1479772	1	1475533	1479772	1475717	1479514	PGA63	orf19.13598|orf19.13597|IPF20958.1|IPF7439.2|Contig4-2632_0006|orf6.4528|orf6.4529|CA2575|orf19.6216|CaO19.13598|SEC31|CaO19.6217	Putative protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1479644	1483225	-	orf19.6214	1479644	1483225	1	1483225	1479644	1483049	1479813	ATC1	orf19.13595|IPF19760|ATH1|IPF20966.1|IPF19760.1|Contig4-1596_0001|Contig4-2632_0007|orf6.4526|CA2574|CaO19.6214|CaO19.13595	Cell wall acid trehalase; catalyzes hydrolysis of the disaccharide trehalose; similar to S. cerevisiae vacuolar acid trehalase (Ath1p) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1483537	1484150	-	tp(agg)1	1483537	1484150	2	1484150|1484075	1484114|1483537	1483828	1483604		tP(AGG)1.2	tRNA-Pro predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGDmod orf_changed=true scenario_first_exon=Z scenario_last_exon=D]
Ca21chr1	1484787	1485890	+	orf19.6213	1484787	1485890	1	1484787	1485890	1484830	1485732	SUI2	orf19.13594|IPF20923.1|IPF13764.2|Contig4-2125_0001|orf6.4525|CA2573|CaO19.13594|CaO19.6213	Putative translation initiation factor; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1485741	1487601	-	orf19.6211	1485741	1487601	1	1487601	1485741	1487542	1485887		orf19.13592|IPF20905.1|IPF13766.2|Contig4-2125_0002|Contig4-2125_0003|orf6.4523|CA2572|CaO19.13592|PTE99|CaO19.6211|IPF13766	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1487721	1489281	-	orf19.6209	1487721	1489281	1	1489281	1487721	1489211	1487778		orf19.13590|IPF13769.1|IPF13767.3|Contig4-2125_0004|orf6.4521|orf6.5415|CA2571|CaO19.6209|IPF13769	Predicted membrane transporter, member of the monocarboxylate porter (MCP) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1487960	1489190	+	ntar_135	1487960	1489190	1	1487960	1489190	1488412	1488834			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1489673	1489788	-	tl(uaa)4	1489673	1489788	2	1489788|1489718	1489750|1489673				tL(UAA)4.2	tRNA-Leu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1490336	1492913	+	orf19.6208	1490336	1492913	1	1490336	1492913	1490379	1492802	MEF2	orf19.13589|IPF20891.1|IPF8163.1|Contig4-2876_0010|orf6.5416|CA3212|CaO19.6208	Predicted ORF in Assemblies 19, 20 and 21; caspofungin induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1493074	1494190	+	orf19.6205	1493074	1494190	1	1493074	1494190	1493138	1494094		orf19.13586|IPF20921.1|IPF8160.1|Contig4-2876_0011|Contig4-2876_0012|orf6.5419|CA3213|CaO19.6205|CaO19.13586|IPF8160	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1494081	1497275	-	orf19.6203	1494081	1497275	1	1497275	1494081	1497140	1494204		PUT3|orf19.13584|IPF19238.2|IPF8158.2|Contig4-2876_0013|orf6.536|orf6.5421|CA3214|CaO19.6203	Predicted zinc-finger protein of unknown function; has similarity to S. cerevisiae Put3p, which is a transcription factor involved in the regulation of proline utilization genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1497797	1499186	-	orf19.6202	1497797	1499186	1	1499186	1497797	1499055	1497979	RBT4	orf19.13583|orf6.537|YJL79|PRY4|IPF8153.3|IPF27769.1|Contig4-2876_0017|orf6.5422|CA0104|IPF8153.2	Protein with similarity to plant pathogenesis-related proteins; required for virulence in mouse systemic and rabbit corneal infections; not required for filamentation; mRNA binds to She3p and is localized to hyphal tips [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1502242	1503195	-	orf19.6200	1502242	1503195	1	1503195	1502242	1503195	1502242		orf19.13580|IPF8147.2|IPF27770.1|Contig4-2022_0012|Contig4-2612_0003|orf6.5424|orf6.929|CA0229|CaO19.6200|IPF8147	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1504743	1507494	-	orf19.6199	1504743	1507494	2	1507494|1507055	1507434|1504743	1507029	1504870		orf19.13579|IPF20894.1|IPF13040.1|Contig4-2612_0009|orf6.5425|CA3215|CaO19.6199|HCS1|CaO19.13579	Predicted ORF in Assemblies 19, 20 and 21; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=A]
Ca21chr1	1507584	1508460	-	orf19.6198.1	1507584	1508460	2	1508460|1508123	1508331|1507584	1508336	1507818		IPF20969.1|IPF13038.1|Contig4-2612_0013|CA3216|IPF13038.3f|IPF13038	Predicted ORF in Assemblies 19, 20 and 21; gene has intron; gene was predicted by Annotation Working Group (AWG), subsequently removed from Assembly 20 by the AWG, and later reinstated (see Locus History) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1508968	1511996	-	orf19.6197	1508968	1511996	1	1511996	1508968	1511622	1509973		orf19.13577|IPF20903.1|IPF19979.1|Contig4-2590_0004|Contig4-2590_0005|orf6.5427|CA3217|CaO19.13577|DHH1|CaO19.6197	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1513182	1514134	+	orf19.6196	1513182	1514134	1	1513182	1514134	1513343	1513909		orf19.13576|IPF20931.1|IPF10005.1|Contig4-2590_0009|orf6.5428|CA3218|CaO19.13576|CaO19.6196|IPF10005	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1514119	1516522	-	orf19.6195	1514119	1516522	1	1516522	1514119	1516388	1514154		orf19.13575|IPF20893.1|IPF10003.2|Contig4-2590_0011|orf6.5429|CA3219|RNH70|CaO19.6195|CaO19.13575|IPF10003	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1516632	1517852	-	orf19.6194	1516632	1517852	1	1517852	1516632	1517800	1516859		orf19.13574|IPF10001|IPF20922.1|IPF10001.2|Contig4-1805_0002|orf6.5430|CA3220|CaO19.13574|CaO19.6194	Protein not essential for viability; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1516894	1517647	+	ntar_136	1516894	1517647	1	1516894	1517647					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1518217	1522248	+	orf19.6193	1518217	1522248	1	1518217	1522248	1518264	1522049	TAF145	orf19.8354|orf19.13573|IPF20901.1|IPF10000.2|IPF26567.1|IPF16558.2|orf6.996|orf6.5431|TAF1|CA3221|CA0255|orf19.735|IPF10000.5eoc	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Taf145p, which is a component of RNA polymerase II transcription factor TFIID; flucytosine repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1526789	1529011	+	orf19.4456	1526789	1529011	1	1526789	1529011	1527013	1528836	GAP4	orf19.11936|IPF22804.1|IPF6541.2|GAP5|Contig4-1998_0001|orf6.7269|CA4667|GAP31|CaO19.11936|CaO19.4456	Putative amino acid permease; hyphal induced; regulated by Gcn2p and Gcn4p; shows colony morphology-related gene regulation by Ssn6p; detected at plasma membrane of yeast-form and germ tube by mass spectrometry [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1528932	1531089	-	orf19.4455	1528932	1531089	1	1531089	1528932	1530826	1529021		orf19.11935|IPF22807.1|IPF6542.1|Contig4-1998_0002|orf6.7268|CA4666|CaO19.4455|CaO19.11935|IPF6542	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1531303	1534700	-	orf19.4451	1531303	1534700	1	1534700	1531303	1534645	1531511	RIA1	orf19.11931|IPF22841.1|IPF6548.2|Contig4-1998_0005|Contig4-2531_0013|orf6.7264|CA4665|CaO19.4451|CaO19.11931|IPF6548	Putative translation elongation factor; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1534771	1535250	+	orf19.4450.2	1534771	1535250	1	1534771	1535250	1534840	1535082			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1535085	1535751	-	orf19.4450.1	1535085	1535751	1	1535751	1535085	1535433	1535227		IPF22833.1|IPF6551.2|Contig4-2531_0010|CA4664|IPF6551.3f	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1536562	1538879	-	orf19.4450	1536562	1538879	1	1538879	1536562	1538464	1536764		ZCF23|orf19.11930|IPF18188.2|IPF6554.2|Contig4-2531_0005|Contig4-2531_0007|orf6.7263|CA4663|CaO19.11930|CaO19.4450|IPF6554	Predicted zinc-finger protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1540711	1541744	+	orf19.4449	1540711	1541744	1	1540711	1541744	1540755	1541501		orf19.11929|IPF22817.1|IPF6557.1|orf6.7262|CA4662|CaO19.4449|LYS7|CaO19.11929	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1542061	1544916	+	orf19.4448	1542061	1544916	1	1542061	1544916	1542293	1544758	SOG2	orf19.11928|IPF22794.1|IPF6561.2|Contig4-2378_0006|orf6.7261|CA4661|CaO19.11928|CaO19.4448|IPF6561	Leucine-rich-repeat domain protein of RAM cell wall integrity signaling network; role in cell separation, azole sensitivity; required for hyphal growth; lacks orthologs in higher eukaryotes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1545416	1546445	+	orf19.4447	1545416	1546445	1	1545416	1546445	1545462	1546361	YMC1	orf19.11927|IPF22816.1|IPF6563.1|Contig4-2378_0001|orf6.7260|CA4660|CaO19.4447|CaO19.11927	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1546298	1548251	-	orf19.4446	1546298	1548251	1	1548251	1546298	1548214	1546472		orf19.11926|IPF22808.1|IPF17754.2|orf6.7259|CA4659|CaO19.4446|CaO19.11926|IPF17754	Protein similar to ammomium permeases that is probably inactive, as a mep2 mep3 double homozygous null mutation abolishes cellular ammomium permease activity; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1549779	1551488	+	orf19.4445	1549779	1551488	1	1549779	1551488	1549838	1551466		orf19.11925|IPF22811.1|IPF3092.1|Contig4-2907_0018|orf6.7258|CA4658|CaO19.11925|CaO19.4445|IPF3092	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1551742	1552829	+	orf19.4444	1551742	1552829	1	1551742	1552829	1551791	1552717	PHO15	orf19.11924|IPF22814.1|IPF3094.1|Contig4-2907_0015|orf6.7257|CA4657|CaO19.4444|PHO131|CaO19.11924|PHO13|IPF3094	Protein described as 4-nitrophenyl phosphatase, possible histone H2A phosphatase; involved in regulation of white-opaque switching; hyphal downregulated; induced in core stress response; induced by heavy metal (cadmium) stress via Hog1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1552764	1553020	-	ntar_137	1552764	1553020	1	1553020	1552764					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1553448	1554293	+	orf19.4443	1553448	1554293	1	1553448	1554293	1553589	1554143	YPD1	orf19.11923|orf6.7256|IPF22818.1|IPF3095.1|Contig4-2907_0011|CA4656|CaO19.4443|CaO19.11923|IPF3095	Phosphohistidine intermediate protein in a phosphorelay signal transduction pathway; residue His69 is the phosphoacceptor histidine; predicted to be soluble and cytosolic; functional homolog of S. cerevisiae Ypd1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1554098	1556036	-	orf19.4442	1554098	1556036	1	1556036	1554098	1555985	1554303	ALG9	orf19.11922|IPF22809.1|IPF3098.2|Contig4-2907_0010|orf6.7255|CA4655|CaO19.11922|CaO19.4442|IPF3098	Putative mannosyltransferase; similar to S. cerevisiae Alg9p; has HKEXRF motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1556141	1558033	-	orf19.4441	1556141	1558033	1	1558033	1556141	1557966	1556170		orf19.11921|IPF22806.1|IPF3101.1|Contig4-2907_0006|Contig4-2907_0007|orf6.7254|CA4654|CaO19.11921|DNA43|CaO19.4441|IPF3101	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1558150	1560770	+	orf19.4440	1558150	1560770	1	1558150	1560770	1558202	1560721	SEC34	orf19.11920|IPF22793.1|IPF3102.1|Contig4-2907_0005|orf6.7253|CA4653|COG3|CaO19.4440|CaO19.11920|IPF3102	Protein not essential for viability; similar to S. cerevisiae Cog3p, which is a component of the conserved oligomeric Golgi complex involved in intracellular protein trafficking [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1560496	1561175	-	orf19.4439.1	1560496	1561175	1	1561175	1560496	1560986	1560777		IPF22795.1|IPF3103.2|orf6.3230	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1561038	1561481	+	orf19.4439	1561038	1561481	1	1561038	1561481	1561038	1561481		orf19.11919|IPF22822.1|IPF3105.2|Contig4-2907_0004|orf6.7252|CA4652|CaO19.11919|CaO19.4439|IPF3105	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1569740	1570173	-	tl(aag)2	1569740	1570173	2	1570173|1570098	1570137|1569740	1570167	1569962		tL(AAG)2.2	tRNA-Leu predicted by tRNAscan-SE; has atypical G at position 32 [label_first_exon=CGD label_last_exon=CGDmod orf_changed=true scenario_first_exon=Z scenario_last_exon=D]
Ca21chr1	1570906	1571473	+	ntar_138	1570906	1571473	1	1570906	1571473					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1571384	1571662	-	ntar_139	1571384	1571662	1	1571662	1571384	1571557	1571384			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1573775	1574044	+	ntar_140	1573775	1574044	1	1573775	1574044	1573775	1573897			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1578359	1580772	+	orf19.4438	1578359	1580772	1	1578359	1580772	1578967	1580490	RME1	orf19.11918|IPF3121|IPF3121.1|IPF28396.1|Contig4-3008_0024|orf6.7251|CA4651|CaO19.4438	Protein similar to S. cerevisiae meiotic regulator Rme1p; white-specific transcription; upregulation correlates with clinical development of fluconazole resistance; transcription is not regulated during rat oral infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1580496	1581040	-	ntar_141	1580496	1581040	1	1581040	1580496					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1581182	1584450	+	orf19.4437	1581182	1584450	2	1581182|1581323	1581252|1584450	1581235	1584358		orf19.11916|IPF9859.2|IPF28412.1|Contig4-3008_0028|Contig4-3008_0029|orf6.7249|CA4650|ISW1|ISW1.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1583991	1584993	-	orf19.4436	1583991	1584993	1	1584993	1583991	1584935	1584381		orf19.11915|IPF22819.1|IPF9860.2|Contig4-3008_0031|orf6.7248|CA4649|GPX2|CaO19.11915|CaO19.4436|GPX4	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1585872	1590148	+	orf19.4435	1585872	1590148	1	1585872	1590148	1586011	1589922		orf19.11914|IPF9864.1|IPF28404.1|Contig4-3008_0033|orf6.7247|CA4648|STU1|CaO19.11914|CaO19.4435|IPF9864	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1590535	1593032	-	orf19.4433	1590535	1593032	1	1593032	1590535	1592574	1590604	CPH1	orf19.11912|APRP1|ACPR1|ACPR|IPF9866.3|IPF5536.2|Contig4-2476_0010|orf6.2724|orf6.695|orf6.7245|CA0154|CaO19.4433	Transcription factor required for mating and hyphal growth on solid media; with Efg1p required for host cytokine response; in filamentation pathway with Ess1p and Czf1p; regulates genes of galactose metabolism [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1593608	1593860	-	ntar_142	1593608	1593860	1	1593860	1593608					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1594949	1598365	-	orf19.4432	1594949	1598365	1	1598365	1594949	1598119	1595267	KSP1	orf19.11910|IPF22791.1|IPF5540.2|Contig4-2969_0018|orf6.2723|CA1288|CaO19.11910|CaO19.4432	Putative protein of unknown function; mRNA binds to She3p and is localized to hyphal tips; mutation confers hypersensitivity to amphotericin B; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1598525	1598954	-	ntar_143	1598525	1598954	1	1598954	1598525					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1599231	1599949	+	ntar_144	1599231	1599949	1	1599231	1599949	1599811	1599933			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1600014	1600152	-	ntar_145	1600014	1600152	1	1600152	1600014					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1600347	1602209	+	orf19.4430	1600347	1602209	1	1600347	1602209	1600458	1602098		orf19.11908|IPF22812.1|IPF5545.2|Contig4-2969_0013|Contig4-2969_0014|orf6.2721|CA1287|CaO19.4430|CaO19.11908|IPF5545	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1601968	1604141	-	orf19.4428	1601968	1604141	1	1604141	1601968	1603689	1602250		orf19.11906|IPF5546|IPF5546.1|IPF28397.1|Contig4-2969_0012|orf6.2719|CA1286|CaO19.11906|CaO19.4428	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1604326	1605072	-	orf19.4427	1604326	1605072	1	1605072	1604326	1605009	1604515	SKP1	orf19.11905|IPF5549.2|IPF28398.1|Contig4-2969_0008|orf6.2718|orf6.2827|CA1285|CaO19.4427	Protein described as subunit D of kinetochore protein complex CBF3; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1605244	1607095	-	orf19.4426	1605244	1607095	1	1607095	1605244	1606830	1605439	PEX3	orf19.11904|IPF18715.2|IPF5552.2|Contig4-2969_0007|orf6.2717|orf6.2828|CA1362|CaO19.4426	Putative peroxisomal protein involved in targeting proteins into peroxisomes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1609129	1610100	+	orf19.4424	1609129	1610100	1	1609129	1610100	1609129	1610100	PHO100	orf19.11902|IPF22815.1|IPF5556.1|PHO3|Contig4-2969_0004|orf6.2830|CA1363|CaO19.4424|CaO19.11902|IPF5556	Putative inducible acid phosphatase; DTT-extractable and observed in culture supernatant under low-phosphate conditions; slight effect on murine virulence; induced on biofilm formation; virulence-group-correlated expression; N-glycosylated [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1610137	1610698	-	ntar_146	1610137	1610698	1	1610698	1610137					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1610930	1614440	+	orf19.4423	1610930	1614440	1	1610930	1614440	1611087	1614308		orf19.11901|IPF22836.1|IPF5561.2|Contig4-2969_0001|Contig4-2969_0002|orf6.2831|CA1364|CaO19.4423|CaO19.11901|IPF5561	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1615586	1615745	+	ntar_147	1615586	1615745	1	1615586	1615745					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1615671	1616981	-	orf19.2799	1615671	1616981	1	1616981	1615671	1616916	1615765	GPI8	orf19.10317|IPF24553.1|IPF11799.2|Contig4-2693_0008|orf6.3728|CA2007|CaO19.2799|CaO19.10317	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Gpi8p, which is a subunit of the GPI transamidase complex that adds GPI anchors to proteins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1617137	1619172	-	orf19.2798	1617137	1619172	1	1619172	1617137	1619149	1617182		orf19.10316|IPF24546.1|IPF11801.2|Contig4-2693_0007|orf6.3727|CA2006|CaO19.10316|CaO19.2798|IPF11801	Putative helicase; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1619388	1621259	-	orf19.2797	1619388	1621259	1	1621259	1619388	1621259	1619388		orf19.10315|IPF24549.1|IPF11802.2|Contig4-2693_0005|orf6.3726|CA2005|CaO19.2797|CaO19.10315|IPF11802	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1621401	1623540	-	orf19.2796	1621401	1623540	1	1623540	1621401	1623502	1621508		orf19.10314|IPF24548.1|IPF15718.2|Contig4-2693_0003|orf6.3725|CA2004|CaO19.2796|POL12	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1623766	1624990	-	orf19.2795	1623766	1624990	1	1624990	1623766	1624898	1623924		orf19.10313|IPF24554.1|IPF16471.1|Contig4-1628_0003|orf6.3724|CA2003|LHP1|CaO19.2795|IPF16471	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1625216	1626196	+	orf19.2794	1625216	1626196	1	1625216	1626196	1625260	1626093		orf19.10312|IPF24557.1|IPF16470.2|Contig4-1628_0004|Contig4-1676_0002|orf6.3723|YDL219W|CA2002|CaO19.10312|CaO19.2794|IPF16470	Protein regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment); alkaline upregulated; macrophage-induced protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1626180	1629427	-	orf19.2792	1626180	1629427	1	1629427	1626180	1629144	1626286	IST2	orf19.10310|IPF7245.3|IPF17074.2|Contig4-2218_0006|orf6.3611|orf6.3721|CA2001|CaO19.2792|IPF17074	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1630691	1630786	+	orf19.2800	1630691	1630786	1	1630691	1630786					Predicted ORF in Assembly 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1631014	1631370	-	ntar_148	1631014	1631370	1	1631370	1631014	1631370	1631167			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1631779	1634913	-	orf19.2791	1631779	1634913	1	1634913	1631779	1634762	1631898		orf19.10309|IPF7255.2|IPF11796.1|Contig4-2483_0003|Contig4-2693_0010|orf6.3608|orf6.3610|orf6.3720|CA2000|CaO19.2791|IPF11796	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1635101	1636526	+	orf19.2790	1635101	1636526	1	1635101	1636526	1635240	1636334	SWD2	orf19.10306|IPF7260.1|IPF11792.2|Contig4-2384_0002|Contig4-2384_0003|orf6.3607|orf6.3719|CA1910|CaO19.10306|CaO19.2790|IPF7260	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1636441	1636839	-	ntar_149	1636441	1636839	1	1636839	1636441					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1636935	1638010	+	orf19.2789	1636935	1638010	1	1636935	1638010	1636942	1637901		orf19.10305|IPF24555.1|IPF7262.2|Contig4-2384_0004|orf6.3606|orf6.977|CA0248|CaO19.2789|IPF7262	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1637880	1639192	-	orf19.2788	1637880	1639192	1	1639192	1637880	1639135	1637927		orf19.10304|IPF24552.1|IPF7263.2|Contig4-2384_0005|Contig4-2384_0007|orf6.3605|orf6.976|CA0247|CaO19.2788|RIB21	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1639483	1640851	-	orf19.2787	1639483	1640851	1	1640851	1639483	1640814	1639582	PRY1	orf19.10303|IPF20091.1|IPF20053.1|Contig4-2384_0008|orf6.3604|orf6.975|CA1909|CaO19.2787|IPF20091	Transcription is opaque specific; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1641901	1645390	-	orf19.2786	1641901	1645390	1	1645390	1641901	1645192	1642067		orf19.10302|IPF24565.1|IPF7268.2|Contig4-2533_0009|orf6.3603|CA1908|APL3|CaO19.2786|CaO19.10302	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1645584	1646560	+	orf19.2785	1645584	1646560	1	1645584	1646560	1645704	1646228	ATP7	orf19.10301|IPF24558.1|IPF7270.1|orf6.3602|CA1907|CaO19.2785|CaO19.10301	Putative subunit of the F1F0-ATPase complex; shows colony morphology-related gene regulation by Ssn6p; farnesol-, macrophage-downregulated protein abundance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1646326	1647328	-	orf19.2784	1646326	1647328	1	1647328	1646326	1647328	1646384		orf19.10300|IPF24556.1|IPF7271.1|Contig4-2533_0003|Contig4-2533_0004|orf6.3601|CA1906|CaO19.2784|CaO19.10300|IPF7271	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1647588	1648207	+	ntar_150	1647588	1648207	1	1647588	1648207	1647989	1648207			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1647638	1648912	-	orf19.2783	1647638	1648912	1	1648912	1647638	1648912	1647638	PIR32	orf19.10299|IPF24551.1|IPF7274.2|Contig4-2533_0002|orf6.3600|CA1905|CaO19.10299|PIR3|CaO19.2783|IPF7274	[NOT TRANSCRIBED?] Protein described as putative cell wall structural component; macrophage-induced gene [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1649634	1650560	+	orf19.2782	1649634	1650560	1	1649634	1650560	1649731	1650258		orf19.10298|IPF7275.2|IPF19489.2|Contig4-2533_0001|orf6.14|orf6.3599|CA1904|CaO19.10298|GRX5|CaO19.2782	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1650887	1651487	+	ntar_151	1650887	1651487	1	1650887	1651487	1651236	1651487			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1651229	1654072	-	orf19.2781	1651229	1654072	1	1654072	1651229	1653745	1651229		orf19.10297|IPF14089.2|IPF19488.2|Contig4-2630_0016|orf6.15|orf6.859|CA0206|CaO19.2781|IPF14089	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr1	1656963	1659084	-	ntar_152	1656963	1659084	1	1659084	1656963	1659046	1658867			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1658949	1659461	+	orf19.2779	1658949	1659461	1	1658949	1659461	1658949	1659461		orf19.10295|orf19.10296|IPF24559.1|IPF16330.2|Contig4-2630_0002|orf6.1476|orf6.1477|orf19.2780|CaO19.2779|CaO19.10295	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1659233	1659876	-	ntar_153	1659233	1659876	1	1659876	1659233					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1660182	1663440	+	orf19.2778	1660182	1663440	1	1660182	1663440	1660272	1662500		orf19.8812|orf19.10294|IPF26069.1|IPF18002.2|IPF24547.1|IPF16466.1|orf6.866|orf6.1475|CA0207|CA0504|orf19.1226|IPF16466.5eoc|IPF16466	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1663582	1666070	+	ntar_154	1663582	1666070	1	1663582	1666070	1664365	1665960			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1666503	1667093	+	orf19.1227	1666503	1667093	1	1666503	1667093	1666503	1667093		ZCF4|orf19.8813|IPF26088.1|IPF19850.1|Contig4-1474_0002|orf6.867|CA0208|CaO19.8813|CaO19.1227|IPF19850	Putative transcription factor with zinc cluster DNA-binding motif; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1667987	1669667	+	orf19.1228	1667987	1669667	1	1667987	1669667	1668206	1669300	HAP2	orf19.8814|IPF18396.2|IPF16519.2|orf6.5088|orf6.868|CA0209|CaO19.1228|CA2983|IPF18396|IPF18396.1	CCAAT-binding factor regulates low-iron (chelation) induction of FRP1 transcription, and under these conditions CBF comprises Hap43p and probably Hap2p and Hap3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1669635	1673221	-	orf19.1229	1669635	1673221	1	1673221	1669635	1672965	1669828		orf19.8815|orf19.8816|IPF16520.2|IPF26077.1|IPF19119.2|IPF29521.1|IPF13285.2|Contig4-1270_0001|Contig4-1270_0002|Contig4-2208_0002|orf6.5087|orf6.869|orf6.5086|CA6253|CA2982|CA2981|orf19.1230|orf19.1231|CSE1.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1673375	1674265	+	ntar_155	1673375	1674265	1	1673375	1674265	1674089	1674265			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1673923	1675468	-	orf19.1232	1673923	1675468	1	1675468	1673923	1675356	1674241	VRG4	orf19.8817|IPF26079.1|IPF13284.2|Contig4-2208_0006|orf6.5085|CA2980|CaO19.1232|CaO19.8817|GOG5	GDP-mannose transporter; essential; required for glycosylation, hyphal growth; functional homolog of S. cerevisiae Vrg4p, which imports GDP-mannose from cytoplasm to Golgi for protein and lipid mannosylation; no mammalian homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1676908	1678950	-	orf19.1233	1676908	1678950	1	1678950	1676908	1678759	1677134	ADE4	orf19.8818|IPF26073.1|IPF13283.2|Contig4-1515_0003|orf6.5084|CA2979|CaO19.1233|CaO19.8818	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1680602	1680836	-	ntar_156	1680602	1680836	1	1680836	1680602					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1685048	1685239	-	ntar_157	1685048	1685239	1	1685239	1685048					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1691374	1692912	+	orf19.4712	1691374	1692912	1	1691374	1692912	1691374	1692912	FGR6-3	IPF12868.1|orf6.1877|orf6.3125|CA1562|CaO19.4712|IFV12	Protein lacking an ortholog in S. cerevisiae; member of a family encoded by FGR6-related genes in the RB2 repeat sequence; transposon mutation affects filamentous growth [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1696330	1699443	+	orf19.4713	1696330	1699443	1	1696330	1699443	1696389	1699295		orf19.12514|IPF13855.2|IPF22154.1|IPF10881.2|orf6.3126|orf6.3389|CA1563|orf19.5047|IPF13855.5eoc|IPF13855	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1699215	1700299	-	orf19.5049	1699215	1700299	1	1700299	1699215	1700264	1699335		orf19.12516|IPF22145.1|IPF10884.1|Contig4-2722_0002|orf6.3387|CA1747|CaO19.5049|CaO19.12516|IPF10884	Predicted ORF in Assemblies 19, 20 and 21; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1700415	1702662	+	orf19.5050	1700415	1702662	1	1700415	1702662	1700480	1702567	MTO1	orf19.12517|IPF22121.1|IPF10886.2|Contig4-2722_0003|orf6.3386|CA1746|CaO19.12517|CaO19.5050|IPF10886	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1702547	1705070	-	orf19.5051	1702547	1705070	1	1705070	1702547	1704918	1702648		orf19.12518|IPF22116.1|IPF10888.1|Contig4-2722_0004|orf6.3385|CA1745|CaO19.5051|CaO19.12518|IPF10888	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1705129	1706945	+	orf19.5052	1705129	1706945	1	1705129	1706945	1705203	1706363		orf19.12519|IPF22139.1|IPF10889.1|Contig4-2722_0005|orf6.3384|CA1744|CaO19.5052|CaO19.12519|IPF10889	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1706365	1707330	-	orf19.5053	1706365	1707330	1	1707330	1706365	1707228	1706446		orf19.12520|IPF22150.1|IPF12209.2|Contig4-2722_0006|orf6.3383|CA1743|ECO1|CaO19.12520|CaO19.5053|IPF12209	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1707411	1708576	+	orf19.5054	1707411	1708576	1	1707411	1708576	1707564	1708466		orf19.12521|IPF22146.1|IPF12210.2|orf6.3382|CA1742|CaO19.5054|IPF12210	Putative quinolinate phosphoribosyl transferase, involved in NAD biosynthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1708327	1710028	-	orf19.5056	1708327	1710028	1	1710028	1708327	1709964	1708525		orf19.12523|IPF12212.3|IPF28152.1|Contig4-2407_0008|Contig4-2407_0009|orf6.17|orf6.3380|CA0002|CaO19.5056|APC10|DOC1|IPF12212.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1710157	1711669	+	orf19.5057	1710157	1711669	1	1710157	1711669	1710213	1711466		orf19.12524|IPF19487.2|IPF12213.2|Contig4-2407_0007|orf6.16|orf6.3379|CA1741|CaO19.5057|IPF12213	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1711544	1713692	-	orf19.5058	1711544	1713692	1	1713692	1711544	1713620	1711758	SMI1	orf19.12525|IPF22129.1|IPF12215.2|Contig4-2407_0002|Contig4-2407_0003|orf6.3378|CA1740|CaO19.5058	Decreased mRNA abundance observed in cyr1 homozygous null mutant hyphal cells; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1714361	1714672	+	ntar_158	1714361	1714672	1	1714361	1714672	1714506	1714637			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1714577	1717207	-	orf19.5059	1714577	1717207	1	1717207	1714577	1717055	1714737	GCS1	orf19.12526|orf19.12527|orf6.1606|GSH1|IPF12218.2|IPF28150.1|orf6.3377|orf6.1607|CA0583|CA6219|CA0584|orf19.5060|GSH1.53f|GSH1.3f|GSH1.exon2	Gamma-glutamylcysteine synthetase; enzyme of glutathione synthesis; similar to Hansenula polymorpha Gsh2p; induced on early/intermediate biofilm formation, in low iron, H2O2, Cd, or presence of human neutrophils; possibly adherence-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1717787	1718279	-	ntar_159	1717787	1718279	1	1718279	1717787					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1718441	1721156	-	orf19.5061	1718441	1721156	1	1721156	1718441	1720995	1718587	ADE5,7	orf19.12528|IPF13495.2|IPF19378.2|Contig4-1920_0002|orf6.1608|orf6.238|CA6294|CA0585|orf19.5062|"ADE5|7.3f"	Enzyme of adenine biosynthesis; interacts with Vps34p; required for hyphal growth and virulence; flucytosine induced; not induced during GCN response, in contrast to the S. cerevisiae ortholog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1722833	1723616	+	orf19.5063	1722833	1723616	1	1722833	1723616	1722918	1723493		orf19.12529|IPF17932.1|IPF13493.1|Contig4-1378_0002|Contig4-1944_0005|orf6.1609|orf6.468|CA0586|CaO19.5063|IPF13493	Predicted ORF in Assemblies 19, 20 and 21; ciclopirox olamine induced; regulated by Ssn6p; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1723604	1725171	-	orf19.5064	1723604	1725171	1	1725171	1723604	1725072	1723858	MRPL3	orf19.12530|IPF22138.1|IPF19552.2|Contig4-1944_0004|orf6.134|orf6.469|CA0089|CaO19.12530|CaO19.5064|IPF19552.1	Predicted ORF in Assemblies 19, 20 and 21; downregulated in core stress response; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1725713	1726402	+	orf19.5064.1	1725713	1726402	1	1725713	1726402	1725751	1725942			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1726146	1727832	-	orf19.5065	1726146	1727832	1	1727832	1726146	1727666	1726263		orf19.12531|IPF13488.2|IPF15606.2|Contig4-2050_0003|orf6.133|orf6.1522|CA0535|ERD1|CaO19.5065|IPF15606	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1728195	1728751	+	ntar_160	1728195	1728751	1	1728195	1728751					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1728267	1729364	-	ntar_161	1728267	1729364	1	1729364	1728267	1729336	1729208			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1729642	1730566	-	orf19.5066	1729642	1730566	1	1730566	1729642	1730502	1729702		orf19.12532|IPF22148.1|IPF15607.1|Contig4-2050_0001|orf6.1521|CA0534|CaO19.12532|CaO19.5066|IPF15607	Predicted ORF in Assemblies 19, 20 and 21; essential; S. cerevisiae ortholog is essential [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1730636	1731522	+	orf19.5067	1730636	1731522	1	1730636	1731522	1730783	1731481		orf19.12533|IPF22153.1|IPF19872.1|orf6.1520|CA0533|LRP1|CaO19.5067|CaO19.12533|IPF19872	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1731467	1735401	-	orf19.5068	1731467	1735401	1	1735401	1731467	1735358	1731684		orf19.12534|IPF12318.3|IPF16157.2|Contig4-2885_0001|orf6.1519|orf6.2426|CA0532|IRE1|CaO19.5068	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1735791	1736125	+	ntar_162	1735791	1736125	1	1735791	1736125					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1736568	1738498	-	orf19.5069	1736568	1738498	1	1738498	1736568	1737864	1737133		orf19.12535|IPF12316.2|IPF19120.1|Contig4-2337_0002|orf6.2427|orf6.865|CA1098|CaO19.5069|IPF12316	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1739017	1739410	+	ntar_163	1739017	1739410	1	1739017	1739410					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1739043	1739770	-	ntar_164	1739043	1739770	1	1739770	1739043	1739769	1739647			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1740730	1740943	-	ntar_165	1740730	1740943	1	1740943	1740730					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1741632	1741804	+	ntar_166	1741632	1741804	1	1741632	1741804					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1741813	1743225	-	orf19.5070	1741813	1743225	1	1743225	1741813	1743149	1741854		orf19.12536|orf6.2428|IPF12312.1|IPF28154.1|Contig4-1983_0002|Contig4-2337_0010|YOR009|CA1099|CaO19.5070|IPF12312	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally regulated by iron; expression greater in low iron; similar to cell-wall mannoproteins; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type; regulated by osmotic and oxidative stress via Hog1p; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1746838	1749949	+	orf19.5071	1746838	1749949	1	1746838	1749949	1747314	1749605	NRP1	orf19.12537|IPF18762.2|IPF10092.2|Contig4-2713_0003|orf6.2429|orf6.6305|CA3900|CaO19.12537|CaO19.5071|IPF10092	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1750143	1751122	+	orf19.5073	1750143	1751122	1	1750143	1751122	1750300	1751019	DPM1	orf19.12539|IPF22152.1|IPF10089.2|Contig4-2713_0004|orf6.6303|CA3899|DPMS|CaO19.12539|CaO19.5073	Protein with similarity to S. cerevisiae Dpm1p, which is dolichol phosphate mannose synthase; filament induced; Tup1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1751283	1753286	+	orf19.5074	1751283	1753286	1	1751283	1753286	1751322	1753196		orf19.12540|IPF22128.1|IPF10088.2|Contig4-1814_0001|Contig4-2713_0005|orf6.6302|CA3898|CaO19.5074|UBA2|CaO19.12540	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1753572	1754201	+	orf19.5076	1753572	1754201	1	1753572	1754201	1753657	1754037	PFY1	orf19.12542|orf6.6300|IPF22172.1|IPF16724.2|Contig4-1814_0003|CA3897|CaO19.5076|CaO19.12542	Profilin, functional homolog of S. cerevisiae Pfy1p; hyphal-induced; macrophage/pseudohyphal-induced; regulated by Nrg1p, Tup1p; gene lacks intron (unlike S. cerevisiae PFY1); complements growth of S. cerevisiae srv2 mutant; nonessential [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1754137	1754446	-	ntar_167	1754137	1754446	1	1754446	1754137	1754446	1754273			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1754493	1755250	+	orf19.5076.1	1754493	1755250	1	1754493	1755250	1754779	1755012			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1754642	1755046	-	ntar_168	1754642	1755046	1	1755046	1754642					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1755444	1756220	+	orf19.5077	1755444	1756220	1	1755444	1756220	1755501	1756001		orf19.12543|IPF22157.1|IPF10339.2|Contig4-1814_0007|orf6.6299|CA3896|CaO19.12543|CaO19.5077|IPF10339	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1756169	1757480	-	ntar_169	1756169	1757480	1	1757480	1756169	1756822	1756694			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1756528	1757212	+	orf19.5078	1756528	1757212	1	1756528	1757212	1756580	1756987		orf19.12544|IPF22175.1|IPF10341.1|orf6.6298|CaO19.5078|CaO19.12544	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1757938	1762669	+	orf19.5079	1757938	1762669	1	1757938	1762669	1758073	1762545	CDR4	orf19.12545|IPF22170.1|IPF10349.2|orf6.6297|CA3895|CaO19.12545|CaO19.5079	Putative transporter of ATP-binding cassette (ABC) superfamily; fluconazole, Sfu1p, Hog1p, core stress response induced; caspofungin repressed; fluconazole resistance is not affected by mutation or correlated with expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1762642	1763481	-	orf19.5079.1	1762642	1763481	1	1763481	1762642	1763442	1763056			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1763645	1766898	-	orf19.5081	1763645	1766898	1	1766898	1763645	1766850	1763797	FUN12	orf19.12547|IPF22183.1|IPF8722.1|Contig4-2712_0006|orf6.6295|CA3894|CaO19.12547|CaO19.5081|YIF2	Functional homolog of S. cerevisiae Fun12p translation initiation factor eIF5B; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1767343	1768664	+	orf19.5083	1767343	1768664	1	1767343	1768664	1767426	1768532	DRG1	orf19.12549|IPF22140.1|IPF8715.2|Contig4-2712_0003|orf6.6293|CA3893|FUN11|CaO19.12549|CaO19.5083	Member of the DRG family of GTP-binding proteins; involved in regulation of invasive filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1768800	1772408	+	orf19.5085	1768800	1772408	1	1768800	1772408	1769083	1772358		orf19.12551|IPF22181.1|IPF8712.2|Contig4-2712_0001|orf6.6291|CA3892|PSE1|CaO19.12551|CaO19.5085	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1772677	1775122	+	orf19.5087	1772677	1775122	1	1772677	1775122	1772735	1774846	BUD6	orf19.12553|IPF22122.1|IPF8707.2|Contig4-2085_0001|orf6.6289|CA3891|CaO19.5087|CaO19.12553	Protein required for Spitzenkorper formation in hyphal cells (wild-type localization of Mlc1p to the Spitzenkorper); localizes to polarisome [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1774798	1777461	-	orf19.5089	1774798	1777461	1	1777461	1774798	1777459	1774856	TERT	orf19.12555|orf6.6287|TERT1|TERT2|IPF22114.1|IPF19791.1|Contig4-2085_0003|CA3890|EST2|CaO19.12555|TRT1|CaO19.5089	Telomerase reverse transcriptase; catalytic protein subunit of telomere synthesis; essential for telomerase activity; has telomerase-specific motif T and other conserved reverse transcriptase motifs [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1777612	1778726	+	orf19.5090	1777612	1778726	1	1777612	1778726	1777650	1778630		orf19.12556|IPF22143.1|IPF12969.2|Contig4-2641_0017|orf6.6286|CA3889|TAD3|CaO19.12556|CaO19.5090	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1778151	1779265	-	orf19.5092	1778151	1779265	1	1779265	1778151	1779265	1778627		orf19.12558|IPF22155.1|IPF12967.1|Contig4-2641_0001|orf6.6284|CA3888|CaO19.12558|CaO19.5092|IPF12967	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1779290	1780639	+	orf19.5093	1779290	1780639	1	1779290	1780639	1779375	1780433		orf19.12559|IPF22141.1|IPF12964.2|Contig4-2641_0003|orf6.6283|CA3887|SFH1|CaO19.5093|CaO19.12559|IPF12964	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1780557	1783057	-	orf19.5094	1780557	1783057	1	1783057	1780557	1782963	1780738	BUL1	orf19.12560|IPF22119.1|IPF12963.2|Contig4-2641_0004|Contig4-2641_0005|orf6.6282|CA3886|BUL5|CaO19.12560|CaO19.5094|IPF12963	Protein not essential for viability; macrophage/pseudohyphal-induced; similar to S. cerevisiae Bul1p, which may be involved in selection of substrates for ubiquitination [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1784600	1784868	+	ntar_170	1784600	1784868	1	1784600	1784868					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1785343	1789537	-	orf19.5095	1785343	1789537	1	1789537	1785343	1789380	1785424		orf19.12561|IPF22177.1|IPF19790.1|Contig4-2641_0013|Contig4-2641_0015|orf6.4030|orf6.6281|CA3885|OSH2|CaO19.5095|IPF19790	Predicted ORF in Assemblies 19, 20 and 21; caspofungin induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1790346	1793765	-	orf19.5097	1790346	1793765	1	1793765	1790346	1793606	1790436	CAT8	orf19.12563|IPF9674.2|IPF28167.1|Contig4-2662_0002|Contig4-2662_0003|orf6.4032|CaO19.5097|CaO19.12563|CA2219	Predicted zinc-cluster protein; null mutant shows a defect in transcription of JEN1 lactate permease gene; flucytosine repressed; similar to S. cerevisiae Cat8p but mutant phenotype suggests that it has a different set of target genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1794185	1795270	+	orf19.5098	1794185	1795270	1	1794185	1795270	1794223	1795185	NTG1	orf19.12564|orf6.4033|IPF22144.1|IPF9671.1|Contig4-2662_0007|CA2220|CaO19.12564|CaO19.5098	Protein with strong similarity to both S. cerevisiae Ntg1p and Ntg2p DNA repair glycosylases; transcriptionally regulated by iron; expression greater in high iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1795243	1800188	-	orf19.5100	1795243	1800188	1	1800188	1795243	1800113	1795293	MLT1	orf19.12566|ABC1|BPT1|YCF1|BPT1-2|IPF22163.1|IPF9670.2|Contig4-2662_0008|Contig4-2662_0011|Contig4-2662_0013|orf6.4035|CA2221|CaO19.12566|CaO19.5100|IPF9670	Vacuolar membrane transporter: MRP subfamily of ABC family; similar to S. cerevisiae Bpt1p and Ycf1p; may transport organic anions conjugated to glutathione, glucuronate, or sulfate; required for virulence in mouse peritonitis model [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1800842	1801282	+	ntar_171	1800842	1801282	1	1800842	1801282	1801098	1801232			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1801471	1804140	+	orf19.5101	1801471	1804140	1	1801471	1804140	1801719	1804082	CCR4	orf19.12567|IPF22115.1|IPF13962.2|Contig4-2297_0004|orf6.4036|CA2222|CaO19.12567|CaO19.5101	Protein similar to S. cerevisiae Ccr4p of the CCR4-NOT transcription regulatory complex; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1804132	1806475	-	orf19.5102	1804132	1806475	1	1806475	1804132	1806443	1804179	PLB5	orf19.12568|IPF13965.2|IPF17127.3|Contig4-2297_0003|orf6.4037|orf6.6348|CA2223|CaO19.5102	Putative phospholipase B, fungal-specific (no human or murine homolog); null mutation eliminates cell-associated phospholipase A2 activity and attenuates virulence; putative GPI anchor [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1806853	1808045	-	orf19.5103	1806853	1808045	1	1808045	1806853	1807929	1806937		orf19.12569|IPF17128.2|IPF12719.2|Contig4-1667_0001|orf6.4038|orf6.6347|CA3931|PMU5|CaO19.5103|IPF12719	Predicted ORF in Assemblies 19, 20 and 21; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1808962	1809773	-	orf19.5104	1808962	1809773	2	1809773|1809464	1809627|1808962	1809691	1809023	LTP1	orf19.12570|IPF22169.1|IPF12722.1|Contig4-2155_0001|orf6.6346|CA3929|orf19.5104.1|LPT1|CA3930|LPT1.exon2	Putative protein phosphatase of the PTP family (tyrosine-specific), similar to S. cerevisiae Ltp1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1809983	1813984	-	orf19.5105	1809983	1813984	1	1813984	1809983	1813627	1810187		orf19.12571|IPF22178.1|IPF12729.2|Contig4-2155_0005|Contig4-2155_0006|orf6.6345|CA3928|CaO19.5105|Gal11|CaO19.12571	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1814478	1814625	+	ntar_172	1814478	1814625	1	1814478	1814625					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1816240	1819386	-	orf19.5106	1816240	1819386	1	1819386	1816240	1819339	1816394	DIP2	orf19.12572|IPF22110.1|IPF14262.2|Contig4-2615_0005|Contig4-2615_0006|orf6.6344|CA3927|CaO19.12572|CaO19.5106	Protein similar to S. cerevisiae Dip2p, of small ribonucleoprotein complex; transposon mutation affects filamentous growth; physically interacts with TAP-tagged Nop1p; heterozygous null mutant exhibits resistance to parnafungin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1820188	1822491	+	orf19.5107	1820188	1822491	1	1820188	1822491	1820259	1822247	NOT5	orf19.12573|orf6.6343|IPF13254.2|IPF16198.2|Contig4-2615_0003|orf6.142|CA3926|CaO19.12573|CaO19.5107|IPF16198	Protein with similarity to S. cerevisiae Not5p, which is a member of the transcription regulatory CCR4-NOT complex; required for hyphal growth; antigenic during human oral infection; greater expression in yeast-form cells than hyphae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1823480	1825620	+	orf19.5110	1823480	1825620	1	1823480	1825620	1823851	1825434	OPY2	orf19.12576|IPF22134.1|IPF13257.2|Contig4-2451_0005|orf6.6340|CA3925|CaO19.5110|CaO19.12576|IPF13257	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1825876	1828762	+	orf19.5112	1825876	1828762	1	1825876	1828762	1826680	1828713	TKL1	orf19.12578|TKT1|IPF22123.1|IPF13260.2|Contig4-2451_0003|orf6.6338|CA3924|CaO19.12578|CaO19.5112	Putative transketolase; localizes to surface of yeast-form cells, but not hyphae; soluble protein in hyphae; transcription is regulated by Nrg1p, Mig1p, and Tup1p; antigenic in human or murine infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1829076	1830430	-	orf19.5113	1829076	1830430	1	1830430	1829076	1830334	1829288	ADH2	orf19.12579|IPF22142.1|IPF16784.2|Contig4-2451_0001|orf6.6337|CA3923|CaO19.5113	Putative alcohol dehydrogenase; soluble protein in hyphae; fungal-specific (no human or murine homolog); expression is regulated upon white-opaque switching; regulated by Ssn6p; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1831645	1832566	-	orf19.5114	1831645	1832566	1	1832566	1831645	1832442	1831969		orf19.12580|IPF22160.1|IPF6349.2|Contig4-3000_0003|orf6.6336|CA3922|CaO19.12580|GRD19|CaO19.5114	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1832750	1833503	-	orf19.5114.1	1832750	1833503	1	1833503	1832750	1833139	1832948			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1834155	1835964	-	orf19.5117	1834155	1835964	1	1835964	1834155	1835814	1834354	OLE1	orf19.12583|orf6.6333|IPF22136.1|IPF6353.2|Contig4-3000_0008|CA3921|CaO19.5117|CaO19.12583	Fatty acid desaturase (stearoyl-CoA desaturase), essential protein involved in oleic acid synthesis; required for aerobic hyphal growth and chlamydospore formation; subject to hypoxic regulation; fluconazole-induced; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1838982	1841296	+	orf19.5118	1838982	1841296	1	1838982	1841296	1839339	1841225	SDS24	orf19.12584|orf6.6332|IPF22127.1|IPF6359.2|Contig4-3000_0016|Contig4-3000_0017|CA3920|SDS23|CaO19.12584|CaO19.5118	Protein described as similar to S. cerevisiae Ybr214wp; transcription regulated by Mig1p and Tup1p; fluconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1841963	1842100	+	ntar_173	1841963	1842100	1	1841963	1842100					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1842478	1844188	+	orf19.382	1842478	1844188	1	1842478	1844188	1842606	1843982	TEF2	orf19.8012|IPF26916.1|IPF6365.2|Contig4-3000_0020|orf6.339|TEF2-1|CaO19.382|CaO19.8012	Translation elongation factor 1-alpha; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1844067	1846082	-	orf19.384	1844067	1846082	1	1846082	1844067	1845892	1844216		orf19.8014|IPF6367.2|IPF19375.2|Contig4-2976_0005|orf6.247|orf6.341|orf6.6280|CA3884|CaO19.384|IPF6367	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1846424	1849566	-	orf19.385	1846424	1849566	1	1849566	1846424	1849496	1846497	GCV2	orf19.8015|IPF19789.1|IPF6369.3|orf6.246|orf6.6279|CA3883|CaO19.385	Putative protein of glycine catabolism; downregulated by Efg1p; Hog1p-induced; upregulated by Rim101p at acid pH; transcription is activated in the presence of elevated CO2; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1850262	1851563	-	orf19.386	1850262	1851563	1	1851563	1850262	1851405	1850470	SAM4	orf19.8016|IPF26919.1|IPF7279.1|Contig4-1631_0002|orf6.6278|CA3882|CaO19.8016|CaO19.386|IPF7279	Alkaline upregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1851756	1854660	+	orf19.387	1851756	1854660	1	1851756	1854660	1851872	1854532	GCR3	orf19.8017|IPF26905.1|IPF7281.2|Contig4-3031_0024|orf6.6277|CA3881|CaO19.8017|CaO19.387	Functional homolog of S. cerevisiae Gcr3p, which acts in regulation of glycolytic genes; no intron predicted, in contrast to intron in S. cerevisiae GCR3 gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1854812	1855966	+	orf19.388	1854812	1855966	1	1854812	1855966	1854922	1855884	CAF16	orf19.8018|IPF26920.1|IPF7283.2|Contig4-3031_0023|orf6.6276|CaO19.8018|CaO19.388|CA3880	ABC family protein, predicted not to be a transporter; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1855791	1856439	-	orf19.389	1855791	1856439	1	1856439	1855791	1856347	1855967		orf19.8019|IPF26932.1|IPF7284.2|Contig4-3031_0022|orf6.6275|CaO19.389|CaO19.8019	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1856685	1857765	-	orf19.390	1856685	1857765	1	1857765	1856685	1857461	1856886	CDC42	orf19.8020|IPF26926.1|IPF7286.2|Contig4-3031_0021|orf6.6274|CA3879|CaO19.8020|CaO19.390	Rho-type GTPase; required for budding and maintenance of hyphal growth; GGTase I geranylgeranylated; misexpression blocks hyphal growth, causes avirulence in mouse IV infection; shows actin-dependent localization to hyphal tip [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1858202	1860914	-	orf19.391	1858202	1860914	1	1860914	1858202	1860375	1858237	UPC2	orf19.8021|IPF26909.1|IPF7289.2|Contig4-3031_0016|Contig4-3031_0018|orf6.6273|CA3878|CaO19.8021|ECM22|CaO19.391|IPF7289	Transcriptional regulator of ergosterol biosynthetic genes and sterol uptake; binds ERG2 promoter; has Zn(2)-Cys(6) binuclear cluster; induced upon ergosterol depletion, by azoles, anaerobicity; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1858273	1858554	+	ntar_174	1858273	1858554	1	1858273	1858554	1858391	1858546			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1861178	1861910	+	orf19.392	1861178	1861910	1	1861178	1861910	1861319	1861753		orf19.8022|IPF26931.1|IPF7290.1|Contig4-3031_0013|orf6.6272|CA3877|CBP4|CaO19.392|CaO19.8022	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1861670	1862464	-	orf19.393	1861670	1862464	2	1862464|1862324	1862393|1861670	1862414	1861819		orf19.8023|IPF7291.2|IPF29846.1|Contig4-3031_0012|orf6.6271|CA3876|APS3|CaO19.393	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1862562	1864117	+	orf19.394	1862562	1864117	1	1862562	1864117	1862609	1863994		orf19.8024|IPF14430.2|IPF29842.1|Contig4-3031_0011|orf6.6270|CA3875|CaO19.394|IPF14430	Putative kynureninase, involved in NAD biosynthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1864133	1865606	-	orf19.395	1864133	1865606	1	1865606	1864133	1865548	1864226	ENO1	orf19.8025|IPF26917.1|IPF14429.2|Contig4-3031_0010|orf6.6269|CA3874|ENO|CaO19.395|CaO19.8025	Enolase (2-phospho-D-glycerate-hydrolyase), enzyme of glycolysis and gluconeogenesis; major cell-surface antigen; binds host plasmin and plasminogen; immunoprotective; phagocytosis, biofilm-regulated; farnesol-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1866384	1867304	+	orf19.396	1866384	1867304	1	1866384	1867304	1866510	1867145	EAF6	orf19.8026|IPF26924.1|IPF8825.1|Contig4-2296_0007|Contig4-3031_0009|orf6.6268|CA3873|CaO19.8026|CaO19.396|IPF8825	Subunit of the NuA4 histone acetyltransferase complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1867082	1867693	-	orf19.397	1867082	1867693	1	1867693	1867082	1867667	1867224		orf19.8027|IPF26928.1|IPF8826.2|Contig4-3031_0008|orf6.6267|CA3872|MRPL28|CaO19.397|CaO19.8027	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1867848	1868511	+	orf19.398	1867848	1868511	1	1867848	1868511	1867938	1868411		orf19.8028|IPF26929.1|IPF8828.2|Contig4-3031_0007|orf6.6266|CA3871|CaO19.8028|CaO19.398|IPF8828	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1868490	1870780	-	orf19.399	1868490	1870780	1	1870780	1868490	1870656	1868518		orf19.8029|IPF26907.1|IPF8830.2|Contig4-3031_0005|orf6.6265|CA3870|CaO19.399|YPK2|CaO19.8029|YPK1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1871191	1872370	-	orf19.400	1871191	1872370	1	1872370	1871191	1872201	1871464	GCF1	orf19.8030|IPF26922.1|IPF8831.2|Contig4-3031_0004|orf6.6264|CA3869|CaO19.400|CaO19.8030|IPF8831	HMG box-containing mitochondrial (mt) protein; binds to mt DNA and to the HWP1 promoter; mutant phenotype and functional complementation of an S. cerevisiae abf2 mutation suggest a role in mt genome replication and maintenance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1872886	1874949	+	orf19.401	1872886	1874949	1	1872886	1874949	1872960	1874624	TCP1	orf19.8031|CCT1|IPF26911.1|IPF8832.2|Contig4-3031_0002|orf6.6263|CA3868|CaO19.401|CaO19.8031	Transcription is induced in response to alpha pheromone in SpiderM medium; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1874853	1875711	-	orf19.403	1874853	1875711	1	1875711	1874853	1875646	1874882	PCL2	orf19.8033|IPF26921.1|IPF8834.3|Contig4-3031_0001|orf6.2813|orf6.6261|CA1351|CaO19.403|IPF8834.2	Cyclin homolog; reduced expression observed upon depletion of Cln3p; farnesol regulated; periodic mRNA expression, peak at cell-cycle G1/S phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1877268	1877957	+	ntar_175	1877268	1877957	1	1877268	1877957	1877457	1877642			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1877892	1879482	-	orf19.405	1877892	1879482	1	1879482	1877892	1879275	1878025	VCX1	orf19.8035|IPF26918.1|IPF16576.2|Contig4-2020_0006|orf6.2815|CA1352|CaO19.8035|CaO19.405	Putative H+/Ca2+ antiporter; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1880541	1882337	-	orf19.406	1880541	1882337	1	1882337	1880541	1882136	1880646	ERG1	orf19.8036|IPF26914.1|IPF19729.1|Contig4-2020_0009|Contig4-2020_0010|orf6.2816|CA1353|CaO19.8036|CaO19.406	Squalene epoxidase, catalyzes epoxidation of squalene to 2,3(S)-oxidosqualene in the ergosterol biosynthetic pathway; essential; target of allylamine antifungal drugs; uses NADH as a reducing cofactor, while S. cerevisiae Erg1p uses NADPH [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1882594	1882743	+	ntar_176	1882594	1882743	1	1882594	1882743					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1882784	1885099	-	orf19.407	1882784	1885099	1	1885099	1882784	1885055	1882857	GCD6	orf19.8037|IPF26908.1|IPF10142.2|Contig4-2780_0002|orf6.2817|CA1354|CaO19.8037|CaO19.407	Putative catalytic epsilon subunit of the translation initiation factor eIF2B, based on similarity to S. cerevisiae Gcd6p; genes encoding translation factors are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1885178	1885588	+	ntar_177	1885178	1885588	1	1885178	1885588	1885312	1885494			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1885487	1886398	-	orf19.409	1885487	1886398	1	1886398	1885487	1886244	1885603		orf19.8039|IPF10138|IPF26923.1|IPF10138.2|Contig4-2780_0005|orf6.2819|CA1356|CaO19.8039|CaO19.409|IPF10138.5f	Predicted membrane protein; similar to S. cerevisiae Ynr018Wp [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1886569	1887623	+	orf19.4720	1886569	1887623	1	1886569	1887623	1886980	1887468	CTR2	orf19.12183|IPF22485.1|IPF15729.2|Contig4-2780_0006|orf6.3182|CA1600|orf19.72|CaO19.12183|CaO19.4720	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1887718	1889347	+	orf19.4721	1887718	1889347	1	1887718	1889347	1887838	1889175		orf19.12184|IPF22424.1|IPF15728.2|Contig4-2780_0007|orf6.3183|CA1601|CaO19.12184|CaO19.4721|IPF15728	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1889408	1890580	+	orf19.4722	1889408	1890580	1	1889408	1890580	1889579	1890403		orf19.12185|IPF18649.2|IPF13658.2|Contig4-2780_0008|orf6.3184|CA1602|CaO19.4722|RTG1|CaO19.12185	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1890402	1891555	-	orf19.4723	1890402	1891555	2	1891555|1891207	1891293|1890402	1891525	1890589		orf19.12186|IPF22475.1|IPF22533.1|IPF13656.2|IPF13655.2|Contig4-2780_0009|orf6.3185|CA1603|FAD1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1891689	1892585	-	orf19.4724	1891689	1892585	1	1892585	1891689	1892559	1891789		orf19.12187|IPF22466.1|IPF13653.2|Contig4-2780_0010|orf6.3186|CA1604|CaO19.4724|SAP62|CaO19.12187|IPF13653	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1892816	1895340	+	orf19.4725	1892816	1895340	1	1892816	1895340	1893017	1895206	SWI6	orf19.12188|IPF22383.1|IPF17885.2|orf6.3187|CA1605|CaO19.12188|CaO19.4725	Predicted ORF in Assemblies 19, 20 and 21; periodic mRNA expression, peak at cell-cycle G1/S phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1895254	1896022	-	orf19.4726	1895254	1896022	1	1896022	1895254	1895937	1895362		orf19.12189|IPF22479.1|IPF16484.1|orf6.3188|CA1606|FRQ1|CaO19.4726|CaO19.12189|NCS1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1896169	1896877	+	orf19.4727	1896169	1896877	1	1896169	1896877	1896273	1896740		orf19.12190|IPF14916.2|IPF16483.1|orf6.2181|orf6.3189|CA1607|CaO19.4727|IPF14916	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1897055	1901385	+	orf19.4728	1897055	1901385	1	1897055	1901385	1897223	1901365		orf19.12191|IPF14914.2|IPF18648.2|IPF16481.2|orf6.2182|orf6.3190|orf6.439|CA0956|CA6289|orf19.4729|IPF14914.5f|IPF14914	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1901564	1902491	+	orf19.4730	1901564	1902491	2	1901564|1901655	1901592|1902491	1901579	1902363		orf19.12192|IPF22474.1|IPF14323.2|orf6.2183|orf6.438|CA0079|CaO19.4730|IPF14323	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1902948	1904358	+	orf19.4731	1902948	1904358	1	1902948	1904358	1903070	1904245		orf19.12193|IPF14322.1|IPF19274.1|Contig4-2484_0005|orf6.2184|orf6.437|CA0957|COG5|CaO19.4731|IPF14322	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1904252	1907259	-	orf19.4732	1904252	1907259	1	1907259	1904252	1907202	1904416	SEC24	orf19.12194|IPF14321.2|IPF11772.2|Contig4-2484_0008|orf6.2083|orf6.2185|CA0958|CaO19.4732	Possible role in ER to Golgi transport; induced upon yeast-hyphal switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1907506	1908553	+	orf19.4733	1907506	1908553	1	1907506	1908553	1907576	1908484	YMC2	orf19.12195|IPF22458.1|IPF11767.2|Contig4-2643_0001|orf6.2084|orf6.2186|CA0889|CaO19.4733|IPF11767	Predicted ORF in Assemblies 19, 20 and 21; Gcn4p-regulated; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1908483	1908750	-	ntar_178	1908483	1908750	1	1908750	1908483					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1908893	1910052	+	orf19.4734	1908893	1910052	1	1908893	1910052	1908930	1909979		orf19.12196|IPF18826.1|IPF11766.1|Contig4-2643_0004|orf6.2085|orf6.2187|CA0890|CaO19.4734|IPF11766	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1910136	1911529	+	orf19.4735	1910136	1911529	1	1910136	1911529	1910244	1911296		orf19.12197|IPF22444.1|IPF11764.2|Contig4-2643_0006|orf6.2086|CA0891|CaO19.12197|CaO19.4735|IPF11764	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1911435	1911781	-	ntar_179	1911435	1911781	1	1911781	1911435					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1911988	1913993	+	orf19.4736	1911988	1913993	1	1911988	1913993	1912123	1913778		orf19.12198|IPF22412.1|IPF19888.1|Contig4-2643_0008|Contig4-2643_0009|orf6.2087|CA0892|CaO19.4736|CaO19.12198|PHO8.5	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1914685	1916784	+	orf19.4737	1914685	1916784	1	1914685	1916784	1914936	1916693	TPO3	orf19.12199|orf6.3649|YPR156|YGR138|DHA12|IPF11759.2|IPF10646.3|Contig4-2892_0021|orf6.2088|CA1943|IPF11759|CaO19.4737|IPF11759.3f	Possible role in polyamine transport; MFS-MDR family; transcription induced by Sfu1p, regulated upon white-opaque switching; decreased expression in hyphae compared to yeast-form cells; regulated by Nrg1p; fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1916993	1918889	+	orf19.4738	1916993	1918889	1	1916993	1918889	1917067	1918743		orf19.12200|IPF22411.1|IPF10645.2|Contig4-2892_0001|orf6.3650|CA1944|CaO19.4738|CaO19.12200|IPF10645	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1918849	1921025	-	orf19.4739	1918849	1921025	1	1921025	1918849	1920976	1918970	MSS116	orf19.12201|IPF22389.1|IPF10643.2|Contig4-2892_0003|orf6.3651|CA1945|CaO19.4739|CaO19.12201	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1921097	1921864	-	orf19.4740	1921097	1921864	1	1921864	1921097	1921826	1921194		orf19.12202|IPF22476.1|IPF19937.1|Contig4-2447_0002|Contig4-2447_0003|orf6.3652|CA1946|CaO19.12202|CaO19.4740|IPF19937	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1921198	1921522	+	ntar_180	1921198	1921522	1	1921198	1921522	1921198	1921335			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1921949	1924126	+	orf19.4742	1921949	1924126	1	1921949	1924126	1922856	1923920		orf19.12204|IPF10637.1|IPF19297.2|Contig4-2037_0002|orf6.3654|orf6.403|CA1947|CaO19.4742|IPF10637	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1922090	1922673	-	orf19.4741	1922090	1922673	3	1922673|1922341|1922216	1922413|1922283|1922090	1922673	1922090		orf19.12203|IPF10638.2|IPF28263.1|Contig4-2037_0001|orf6.3653|CaO19.4741|CaO19.12203	Predicted ORF in Assemblies 19, 20 and 21; possibly C. albicans-specific [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	1924028	1926210	-	orf19.4743	1924028	1926210	1	1926210	1924028	1926159	1924093	AFG1	orf19.12205|IPF14022.2|IPF10636.3|Contig4-2037_0003|orf6.3655|orf6.404|CA1948|CaO19.4743|AFG12|IPF14022	Protein not essential for viability; similar to S. cerevisiae Afg1p, which is a putative mitochondrial ATPase of the AAA family [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1926297	1928953	-	orf19.4744	1926297	1928953	1	1928953	1926297	1928615	1926408		orf19.12206|IPF14021.2|IPF18510.2|orf6.3656|orf6.4015|CA1949|CaO19.4744|IPF14021	Predicted ORF in Assemblies 19, 20 and 21; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1928959	1930837	-	orf19.4746	1928959	1930837	1	1930837	1928959	1930727	1929099	JIP5	orf19.12208|IPF14019|IPF14019.1|IPF13928.2|orf6.3658|orf6.4016|CA1950|CaO19.4746	Protein not essential for viability; downregulated during core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1931275	1933015	+	orf19.4747	1931275	1933015	1	1931275	1933015	1931411	1933006	HEM14	orf19.12209|orf6.4017|orf6.3659|IPF19663.1|IPF19662.1|CA1951|CaO19.4747	Putative protoporphyrinogen oxidase involved in heme biosynthesis; predicted Kex2p substrate; transcription is regulated by iron; mRNA levels are decreased in a yfh1 null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1932154	1933539	-	orf19.4748	1932154	1933539	1	1933539	1932154	1933452	1933057		orf19.12210|IPF18582.2|IPF13925.1|Contig4-2151_0009|orf6.3660|orf6.4018|CA2210|MSL1|CaO19.4748|U2B''	Putative U2B'' component of the U2 snRNP, involved in splicing; contains an RNA recognition motif (RRM); ortholog of S. cerevisiae MSL1; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1933778	1935640	+	orf19.4749	1933778	1935640	1	1933778	1935640	1933898	1935574		orf19.12211|IPF22427.1|IPF13921.2|Contig4-2151_0005|Contig4-2151_0007|Contig4-2151_0008|orf6.4019|CA2211|CaO19.4749|IPF13921	Predicted ORF in Assemblies 19, 20 and 21; hyphal-induced expression, regulated by Cyr1p, Ras1p, Efg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1936163	1938444	-	orf19.4750	1936163	1938444	1	1938444	1936163	1938354	1936252		orf19.12212|IPF16404.3|IPF13919.2|Contig4-2151_0001|orf6.4020|orf6.88|CA2212|CaO19.4750|IPF13919	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1938535	1939578	+	orf19.4751	1938535	1939578	1	1938535	1939578	1938588	1939475		orf19.12214|IPF22488.1|IPF16405.2|Contig4-1898_0001|orf6.4021|orf6.89|CA2213|RSM25|CaO19.4751|IPF16405	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1939437	1940022	-	orf19.4751.1	1939437	1940022	1	1940022	1939437	1939877	1939653			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1940231	1943194	-	orf19.4752	1940231	1943194	1	1943194	1940231	1942792	1940516	MSN4	orf19.12215|IPF22377.1|IPF9939.2|Contig4-1898_0007|Contig4-2609_0002|orf6.4022|CA2214|CaO19.12215|CaO19.4752|IPF9939	Putative zinc finger transcription factor; similar to S. cerevisiae Msn4p, but not a significant stress response regulator in C. albicans; partly complements STRE-activation defect of S. cerevisiae msn2 msn4 double mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1947493	1951816	+	orf19.4753	1947493	1951816	1	1947493	1951816	1948259	1951699	PFK26	orf19.12217|IPF17562.3|IPF9943.2|Contig4-1843_0004|orf6.1050|orf6.4023|CA2215|CaO19.4753	Protein repressed during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1947497	1947873	-	ntar_181	1947497	1947873	1	1947873	1947497					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1952161	1953340	+	ntar_182	1952161	1953340	1	1952161	1953340	1952510	1952635			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1953280	1955035	-	orf19.4754	1953280	1955035	1	1955035	1953280	1954892	1953369	ZWF1	orf19.12218|IPF13060.2|IPF18011.3|Contig4-2455_0008|orf6.4024|orf6.4601|CA2634|CaO19.4754	Putative glucose-6-phosphate dehydrogenase; antigenic in murine infection; activity induced by O2 or oxidizing agents H2O2 or menadione; caspofungin repressed; macrophage induced; induced in core stress response; regulated by Gcn2p, Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1955571	1956026	-	ntar_183	1955571	1956026	1	1956026	1955571	1955885	1955718			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1955730	1956207	+	ntar_184	1955730	1956207	1	1955730	1956207					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1956359	1959551	-	orf19.4755	1956359	1959551	1	1959551	1956359	1959364	1956554	KEX2	orf19.12219|IPF22355.1|IPF13063.2|Contig4-2455_0002|orf6.4600|CA2633|CaO19.12219|CaO19.4755	Subtilisin-like protease (proprotein convertase), processes aspartyl proteinase Sap2p; required for hyphal growth and wild-type virulence in mouse systemic infection; functional homolog of S. cerevisiae Kex2p, which processes alpha-factor [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1959935	1960147	-	ntar_185	1959935	1960147	1	1960147	1959935					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1960367	1962187	+	orf19.4756	1960367	1962187	1	1960367	1962187	1960409	1962061		orf19.12220|IPF22404.1|IPF19763.1|Contig4-2725_0001|orf6.4599|CA6214|YTP1|CaO19.4756|CaO19.12220	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1962461	1964578	+	orf19.4757	1962461	1964578	1	1962461	1964578	1962576	1964405	NAR1	orf19.12221|IPF22395.1|IPF14388.2|Contig4-2557_0009|Contig4-2557_0010|orf6.4598|CA2632|CaO19.12221|CaO19.4757	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1964855	1966007	+	orf19.4758	1964855	1966007	1	1964855	1966007	1965098	1965838		orf19.12222|IPF22468.1|IPF14389.2|Contig4-2557_0006|orf6.4597|CA2631|CaO19.4758|CaO19.12222|IPF14389	Predicted ORF in Assemblies 19, 20 and 21; alkaline downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1966084	1967184	-	orf19.4759	1966084	1967184	2	1967184|1966919	1967184|1966084	1966889	1966392	COX5	orf19.12223|IPF10910.2|IPF28262.1|COX5A|Contig4-2557_0005|orf6.4596|CA2630|CaO19.12223|CaO19.4759	Protein described as cytochrome oxidase subunit V; has putative regulatory element, upstream CCAAT box; macrophage/pseudohyphal-induced; repressed by nitric oxide; intron in 5'-UTR [label_first_exon=CGD label_last_exon=CGDmod orf_changed=true scenario_first_exon=Z scenario_last_exon=A]
Ca21chr1	1967293	1969056	-	orf19.4760	1967293	1969056	1	1969056	1967293	1969056	1967593		orf19.12224|IPF18440.1|IPF10911.2|Contig4-2557_0004|orf6.179|orf6.4595|CA2629|CaO19.4760|IPF10911	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	1969649	1972007	+	orf19.4761	1969649	1972007	1	1969649	1972007	1969837	1971810	HST1	orf19.12225|IPF10913.2|IPF19405.2|Contig4-2557_0001|orf6.178|orf6.4594|CA2628|CaO19.4761|SIR21|SIR22	Putative histone deacetylase, involved in regulation of white-opaque switching; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1971988	1973581	-	orf19.4763	1971988	1973581	1	1973581	1971988	1972938	1972258		orf19.12227|IPF10916|IPF22471.1|IPF10916.2|orf6.4592|CA2627|CaO19.12227|CaO19.4763	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1973677	1977482	+	orf19.4764	1973677	1977482	1	1973677	1977482	1973795	1977367		orf19.12228|IPF22512.1|IPF10918.2|Contig4-2669_0005|orf6.4591|CA2626|PAN2|CaO19.4764|CaO19.12228	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1977435	1979093	-	orf19.4765	1977435	1979093	1	1979093	1977435	1978893	1978234	PGA6	orf19.12229|orf6.4590|IPF10919.2|IPF17733.2|Contig4-2442_0006|CA2625|CCW12|CaO19.4765|IPF10919	Putative GPI-anchored cell wall protein of unknown function; transcriptionally induced under high iron conditions; upregulated upon Als2p depletion; mRNA binds to She3p and is localized to hyphal tips [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1980919	1984426	-	orf19.4766	1980919	1984426	1	1984426	1980919	1984359	1981057		ARG81|orf19.12230|IPF22523.1|IPF14033.2|Contig4-2442_0003|orf6.2542|CA1175|CaO19.12230|CaO19.4766|CA2624|ARG81.3eoc|IPF17734.2	Putative transcription factor with zinc cluster DNA-binding motif; has similarity to S. cerevisiae Arg81p, which is a transcription factor involved in the regulation of arginine-responsive genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	1985142	1985658	-	ntar_186	1985142	1985658	1	1985658	1985142					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1985690	1986575	+	orf19.4767	1985690	1986575	1	1985690	1986575	1985765	1986505		ZCF28|orf19.12231|IPF22464.1|IPF14255.2|Contig4-2264_0005|orf6.2541|CA1174|CaO19.12231|CaO19.4767|IPF14255	Putative transcription factor with zinc cluster DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1986868	1988598	+	orf19.4768	1986868	1988598	1	1986868	1988598	1986872	1988467		orf19.12232|IPF22393.1|IPF14254.2|Contig4-2264_0001|orf6.2540|CA1173|CaO19.12232|CaO19.4768|IPF14254	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	1991221	1993306	+	orf19.4769	1991221	1993306	1	1991221	1993306	1991586	1993130	IPT1	orf19.12233|IPF11674.2|IPF17541.2|IPF17540.2|Contig4-2253_0002|orf6.2538|orf6.2539|orf6.927|CA0228|CA6290|orf19.4770|IPT1.5f	Inositol phosphoryl transferase, involved in sphingolipid biosynthesis; catalyzes the synthesis of the most abundant sphingolipid, mannose-(inositol-P)2-ceramide, M(IP)2C, from MIPC; required for wild-type membrane localization of Cdr1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	1995811	1996148	-	ntar_187	1995811	1996148	1	1996148	1995811	1996148	1996014			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	1996456	1998858	+	orf19.4771	1996456	1998858	1	1996456	1998858	1996738	1998858		orf19.12234|IPF22382.1|IPF11667.2|orf6.3982|CA2187|MNN47|CaO19.4771|CaO19.12234|IPF11667	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr1	1999304	2001233	-	orf19.4772	1999304	2001233	1	2001233	1999304	2000741	1999578	SSU81	orf19.12235|IPF19613.2|IPF19612.1|Contig4-1937_0004|orf6.3983|orf6.920|SHO1|CA2188|CaO19.4772	Predicted adaptor protein involved in activation of MAP kinase-dependent signaling pathways; links response to oxidative stress to morphogenesis and cell wall biosynthesis; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2002059	2002295	+	ntar_188	2002059	2002295	1	2002059	2002295					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2002432	2002706	+	ntar_189	2002432	2002706	1	2002432	2002706					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2003676	2003904	+	ntar_190	2003676	2003904	1	2003676	2003904					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2004859	2006146	+	orf19.4773	2004859	2006146	1	2004859	2006146	2004893	2005990	AOX2	orf19.12237|AOX1b|IPF19101.2|IPF9420.2|Contig4-2351_0003|orf6.3984|CA2189|AOX2.3f	Alternative oxidase; induced by antimycin A, some oxidants; growth- and carbon-source-regulated; one of two isoforms (Aox1p and Aox2p); involved in cyanide-resistant respiratory pathway that is absent from S. cerevisiae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2006859	2008657	+	orf19.4774	2006859	2008657	1	2006859	2008657	2007337	2008476	AOX1	orf6.3985|AOX1a|IPF22441.1|IPF9418.2|Contig4-2351_0001|CA2190|CaO19.4774|CaO19.12237	Alternative oxidase; low abundance; constitutively expressed; one of two isoforms (Aox1p and Aox2p); involved in a cyanide-resistant respiratory pathway present in plants, protists, and some fungi, although absent from S. cerevisiae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2008450	2009364	-	ntar_191	2008450	2009364	1	2009364	2008450					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2009914	2012781	+	orf19.4775	2009914	2012781	1	2009914	2012781	2010391	2012676	CTA8	orf19.12238|IPF19046.2|IPF9417.2|Contig4-2247_0002|Contig4-2247_0004|orf6.1107|orf6.3986|CA2191|CaO19.4775|IPF9417|HSF1	Essential transcription factor, mediates heat shock transcriptional induction; in the absence of heat stress, Cta8p levels are modulated by growth temperature to regulate basal expression of genes involved in protein folding [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2014918	2017567	+	orf19.4776	2014918	2017567	1	2014918	2017567	2014937	2017567		LYS143|orf19.12240|IPF11774.2|IPF9416.3|Contig4-2888_0010|orf6.1106|orf6.3987|orf6.1105|CA6215|CaO19.4776|IPF9416	Putative transcription factor with zinc cluster DNA-binding motif; has similarity to S. cerevisiae Lys14p, which is a transcription factor involved in the regulation of lysine biosynthesis genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr1	2017546	2019674	-	orf19.4777	2017546	2019674	1	2019674	2017546	2019470	2017683	DAK2	orf19.12241|IPF22403.1|IPF11775.3|Contig4-2888_0009|orf6.1104|orf6.1906|CA0776|CaO19.4777|CA0311|DAK2.3eoc|IPF19048.1	Protein described as similar to dihydroxyacetone kinase; transcription is decreased upon yeast-hyphal switch; fluconazole-induced; caspofungin repressed; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2020201	2022557	+	orf19.4778	2020201	2022557	1	2020201	2022557	2020314	2022383		LYS142|orf19.12242|IPF22385.1|IPF11777.2|Contig4-2888_0007|orf6.1907|CA0777|CaO19.12242|CaO19.4778|IPF11777	Putative transcription factor with zinc cluster DNA-binding motif; has similarity to S. cerevisiae Lys14p, which is a transcription factor involved in the regulation of lysine biosynthesis genes; fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2022386	2024542	-	orf19.4779	2022386	2024542	1	2024542	2022386	2024443	2022581		orf19.12243|orf6.1908|IPF12885.3|IPF12884.2|Contig4-2888_0005|Contig4-2888_0006|orf6.1423|CA0778|CaO19.4779|SGE11|IPF12884	Putative transporter; slightly similar to the Sit1p siderophore transporter; Gcn4p-regulated; fungal-specific (no human or murine homolog); transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2024656	2024956	-	ntar_192	2024656	2024956	1	2024956	2024656					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2025217	2025500	-	ntar_193	2025217	2025500	1	2025500	2025217					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2025826	2027423	+	orf19.4780	2025826	2027423	1	2025826	2027423	2025952	2027325		orf19.12244|IPF12887.2|IPF28255.1|Contig4-2888_0004|orf6.1422|CA0474|CaO19.4780|CaO19.12244|IPF12887	Predicted membrane transporter, member of the drug:proton antiporter (12 spanner) (DHA1) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2027208	2028428	-	orf19.4781	2027208	2028428	1	2028428	2027208	2028376	2027363	GRP1	orf19.12245|IPF12888.1|IPF15705.2|Contig4-2888_0002|orf6.1421|orf6.4891|CA0473|GRE25|CaO19.4781	Protein similar to dihydroflavonol-4-reductases [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2028608	2030198	-	orf19.4783	2028608	2030198	1	2030198	2028608	2030152	2028653		orf19.12247|IPF19867.1|IPF15706.1|Contig4-2888_0001|orf6.4893|orf6.1419|CA2831|CaO19.4783|IPF15706	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2031021	2034797	+	orf19.4784	2031021	2034797	1	2031021	2034797	2031132	2034725	CRP1	orf19.12248|CRD1|IPF22517.1|IPF19962.1|orf6.1418|orf6.4894|CA2832|CaO19.4784	Copper transporter of the plasma membrane; P1-type ATPase (CPx type); mediates Cu resistance; similar to proteins of Menkes and Wilson disease; copper-induced; Tbf1p-activated; suppresses Cu sensitivity of S. cerevisiae cup1 null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2034700	2036008	-	orf19.4785	2034700	2036008	1	2036008	2034700	2035953	2034826	PTC1	orf19.12249|IPF22443.1|IPF19963.1|orf6.4895|CA2833|CaO19.12249|CaO19.4785	Putative protein phosphatase of the Type 2C-related family (serine/threonine-specific), similar to S. cerevisiae Ptc1p; mutant shows virulence defect [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2036683	2038629	+	orf19.4786	2036683	2038629	1	2036683	2038629	2036879	2038543	FGR43	orf19.12250|IPF22408.1|IPF12093.1|Contig4-2482_0003|orf6.4896|CA2834|CaO19.12250|CaO19.4786|IPF12093	Protein lacking an S. cerevisiae ortholog; transposon mutation affects filamentous growth; transcriptionally activated by Mnl1p under weak acid stress; possible spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2038894	2041319	+	orf19.4787	2038894	2041319	1	2038894	2041319	2038995	2041187		orf19.12251|IPF22380.1|IPF12091.2|Contig4-2482_0004|orf6.4897|CA2835|CaO19.12251|CaO19.4787|IPF12091	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2041222	2043954	-	orf19.4788	2041222	2043954	1	2043954	2041222	2043918	2041345	ARG5,6	orf19.12252|IPF22364.1|IPF12088.2|orf6.4898|CA2836|CaO19.12252|ARG5|6|CaO19.4788|"ARG5|6"	Arginine biosynthetic enzyme activities; in S. cerevisiae, processed into distinct polypeptides with acetylglutamate kinase (Arg6p) activity and acetylglutamate-phosphate reductase (Arg5p) activity; Gcn4p regulated; alkaline downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2044719	2045612	-	orf19.4789	2044719	2045612	1	2045612	2044719	2045612	2044719		orf19.12253|IPF22459.1|IPF8340.1|Contig4-2744_0002|orf6.4899|CA2837|CaO19.4789|ALD97|CaO19.12253|IPF8340	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2045125	2045280	+	ntar_194	2045125	2045280	1	2045125	2045280					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2045988	2048993	-	orf19.4791	2045988	2048993	1	2048993	2045988	2048958	2046028		orf19.12255|IPF22538.1|IPF8339.2|Contig4-2744_0004|orf6.4901|CA2838|CaO19.12255|CaO19.4791|IPF8339	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2050033	2051926	-	orf19.4792	2050033	2051926	1	2051926	2050033	2051811	2050138		orf19.12256|IPF22407.1|IPF8336.2|Contig4-2744_0009|orf6.4902|CA2839|CaO19.4792|IPF8336	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2053289	2054013	+	ntar_195	2053289	2054013	1	2053289	2054013	2053478	2053618			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2054978	2055922	+	orf19.4793	2054978	2055922	1	2054978	2055922	2055044	2055643		orf19.12257|IPF22480.1|IPF20058.1|Contig4-1497_0003|Contig4-1844_0002|orf6.1469|CA0500|CaO19.4793|CaO19.12257|IPF20058	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2056034	2059614	-	orf19.4795	2056034	2059614	1	2059614	2056034	2059614	2056114		orf19.12259|IPF16501.2|IPF16767.2|Contig4-1525_0003|Contig4-1525_0004|Contig4-1844_0004|Contig4-3040_0002|orf6.1471|orf6.3054|CA0501|CaO19.4795|IPF16501	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	2060855	2061626	+	orf19.4796	2060855	2061626	1	2060855	2061626	2060917	2061447		IPF22527.1|IPF16764.2|Contig4-3040_0004|orf6.3055|CA1516|CaO19.4796|CAF20|IPF16764	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2061527	2064963	-	orf19.4798	2061527	2064963	1	2064963	2061527	2064662	2061786		orf19.12261|IPF22351.1|IPF11045.2|Contig4-3040_0006|orf6.3057|CA1517|EFR3|CaO19.12261|CaO19.4798|IPF11045	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2065350	2065583	-	ntar_196	2065350	2065583	1	2065583	2065350					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2065898	2067809	+	orf19.4799	2065898	2067809	1	2065898	2067809	2065935	2067767		orf19.12262|IPF22401.1|IPF11040.2|Contig4-3040_0009|Contig4-3040_0010|orf6.3058|CA1518|CaO19.4799|CEF1|CaO19.12262|IPF11040	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2067950	2070404	+	orf19.4800	2067950	2070404	1	2067950	2070404	2067976	2070333	RIM20	orf19.12263|ENX3|IPF22375.1|IPF11037.2|Contig4-3040_0011|orf6.3059|CA1519|CaO19.4800|CaO19.12263	Protein involved in the pH response pathway; binds to the transcription factor Rim101p and may serve as a scaffold to facilitate the C-terminal proteolytic cleavage that activates Rim101p; required for alkaline pH-induced hyphal growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2070510	2072170	+	orf19.4801	2070510	2072170	1	2070510	2072170	2070537	2071934		orf19.12264|IPF22429.1|IPF11035.2|Contig4-3040_0012|Contig4-3040_0013|orf6.3060|CA1520|CaO19.12264|MOD5|CaO19.4801|IPF11035	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2072038	2073501	-	orf19.4802	2072038	2073501	1	2073501	2072038	2073469	2072195	FTH1	orf19.12265|orf6.3061-1|orf6.3061-2|IPF6122.3|IPF11034.2|Contig4-3040_0016|Contig4-3040_0017|orf6.3061|orf6.5208|CA1521|CaO19.4802	Protein not essential for viability; similar to S. cerevisiae Fth1p (putative high affinity iron transporter for intravacuolar stores of iron); repressed by Sfu1p, amphotericin B, caspofungin; induced by alkaline pH, ciclopirox olamine [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2074984	2075361	+	orf19.4803	2074984	2075361	1	2074984	2075361	2074984	2075361			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2075465	2076865	+	orf19.4804	2075465	2076865	1	2075465	2076865	2075465	2076865	LIP2	orf19.12267|IPF22428.1|IPF6120.2|Contig4-3040_0021|orf6.5210|CA3068|CaO19.12267|CaO19.4804	Secreted lipase; member of a differentially expressed lipase gene family; expressed in alimentary tract, but not oral tissue, during mouse oral infection; may have a role in nutrition and/or in creating an acidic microenvironment [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2077587	2080423	+	orf19.4805	2077587	2080423	1	2077587	2080423	2077715	2080315		orf19.12268|IPF22362.1|IPF6117.2|Contig4-3040_0025|orf6.5211|RSN1|CA3069|CaO19.12268|CaO19.4805|IPF6117	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog); transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2080829	2082137	+	orf19.4807	2080829	2082137	1	2080829	2082137	2080938	2081912		orf19.12270|IPF22452.1|IPF6114.2|Contig4-3040_0028|orf6.5213|CA3070|PPA2|CaO19.12270|CaO19.4807	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2082099	2087246	-	orf19.4808	2082099	2087246	1	2087246	2082099	2087100	2082172	NUP188	orf19.12271|IPF22490.1|IPF6113.2|Contig4-3040_0030|orf6.5214|CA3071|CaO19.4808|CaO19.12271	Transcription is regulated by Nrg1p and Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2087393	2088861	+	orf19.4809	2087393	2088861	1	2087393	2088861	2087469	2088764	ERG12	orf19.12272|IPF22438.1|IPF6109.2|Contig4-2674_0002|orf6.5215|CA3072|CaO19.4809|CaO19.12272	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2088781	2089907	-	orf19.4811	2088781	2089907	1	2089907	2088781	2089856	2088870		orf19.12274|IPF22450.1|IPF6108.2|Contig4-2674_0003|orf6.5217|CA3073|CaO19.4811|CaO19.12274|IPF6108	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2089980	2090527	+	orf19.4812	2089980	2090527	1	2089980	2090527	2090037	2090444		orf19.12275|IPF22504.1|IPF6106.2|Contig4-2674_0005|orf6.5218|CA3074|CaO19.4812|CaO19.12275|IPF6106	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2090440	2092195	-	orf19.4813	2090440	2092195	1	2092195	2090440	2092089	2090497	GUA1	orf19.12276|IPF22419.1|IPF6105.2|Contig4-2674_0006|orf6.5219|CA3075|CaO19.12276|CaO19.4813|IPF6105	Predicted ORF in Assemblies 19, 20 and 21; soluble protein in hyphae; flucytosine induced; macrophage-downregulated protein abundance; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2092733	2093068	+	orf19.4814	2092733	2093068	1	2092733	2093068	2092733	2093068		orf19.12277|IPF22495.1|IPF6101.2|Contig4-2674_0008|orf6.5220|CA3076|CaO19.12277|CaO19.4814|IPF6101|IPF6101.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2093265	2094756	+	orf19.4815	2093265	2094756	1	2093265	2094756	2093301	2094701	YTM1	orf19.12278|IPF22434.1|IPF6100.2|Contig4-2674_0010|orf6.5221|CA3077|CaO19.12278|CaO19.4815	Protein similar to S. cerevisiae Ytm1p, which is involved in biogenesis of the large ribosomal subunit; transposon mutation affects filamentous growth; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2094614	2096328	-	orf19.4816	2094614	2096328	1	2096328	2094614	2096110	2094761		orf19.12279|IPF22435.1|IPF19970.1|Contig4-2674_0011|Contig4-2674_0012|orf6.5222|CA3078|CaO19.4816|CaO19.12279|IPF19970	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2096545	2097919	+	orf19.4817	2096545	2097919	1	2096545	2097919	2096717	2097637	RAM2	orf19.12280|IPF22454.1|IPF15519.2|Contig4-2100_0001|orf6.5223|CA3079|CaO19.4817|CaO19.12280	Alpha subunit of heterodimeric protein geranylgeranyltransferase type I and farnesyltransferase; a-specific transcription; lovastatin and fluconazole regulated; GGTase I enzyme binds zinc, is Mg-dependent; Cdc42p is GGTase I substrate [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2100762	2102081	-	ntar_197	2100762	2102081	1	2102081	2100762	2101358	2101161			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2102365	2104312	+	orf19.4818	2102365	2104312	1	2102365	2104312	2102705	2104288		orf19.12281|IPF22477.1|IPF22449.1|IPF14797.2|IPF14799.2|Contig4-2177_0002|Contig4-2177_0004|orf6.2401|CA1082|IPF14797.5f|IPF14797	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2104356	2104712	+	orf19.4819	2104356	2104712	1	2104356	2104712	2104356	2104712		orf19.12282|IPF22510.1|IPF28271.1|orf6.2400|CaO19.12282|CaO19.4819	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2105008	2105941	-	ntar_198	2105008	2105941	1	2105941	2105008	2105941	2105720			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2107046	2108809	+	orf19.4820	2107046	2108809	1	2107046	2108809	2107090	2108712		orf19.12283|IPF22417.1|IPF14710.1|Contig4-2746_0015|Contig4-2746_0017|orf6.2399|CA1080|CaO19.4820|CaO19.12283|IPF14710	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2108870	2110276	-	orf19.4821	2108870	2110276	1	2110276	2108870	2110276	2108870	LIP1	orf19.12284|IPF22431.1|IPF14712.2|Contig4-2746_0012|Contig4-2746_0014|orf6.2398|CA1079|CaO19.12284|CaO19.4821	Secreted lipase, member of a lipase gene family whose members are expressed differentially in response to carbon source and during infection; may have a role in nutrition and/or in creating an acidic microenvironment [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2111781	2113178	-	orf19.4822	2111781	2113178	1	2113178	2111781	2113178	2111781	LIP10	orf19.12285|IPF22423.1|IPF11790.1|Contig4-2746_0010|orf6.7389|CA4757|CaO19.4822|CaO19.12285	[NOT TRANSCRIBED?] Secreted lipase, member of a lipase gene family whose members are expressed differentially in response to carbon source and during infection; may have a role in nutrition and/or in creating an acidic microenvironment [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2114137	2116063	-	orf19.4823	2114137	2116063	1	2116063	2114137	2115617	2114226	LIP6	orf19.12286|IPF22433.1|IPF11788.2|Contig4-2746_0007|orf6.7388|CA4756|CaO19.4823|CaO19.12286	Secreted lipase, member of family of lipase genes expressed differentially in response to carbon source and during infection; may have a role in nutrition and/or in creating an acidic microenvironment; induced on adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2117570	2118931	+	orf19.4824	2117570	2118931	1	2117570	2118931	2117999	2118817		orf19.12287|IPF22463.1|IPF11480.2|Contig4-3078_0040|orf6.7387|CA4755|CaO19.12287|CaO19.4824|IPF11480	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2118807	2119384	-	orf19.4825	2118807	2119384	1	2119384	2118807	2119345	2118881		orf19.12288|IPF22489.1|IPF11479.1|Contig4-3078_0039|orf6.7386|CA4754|CaO19.4825|FMC1|CaO19.12288|IPF11479	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2120369	2121874	+	orf19.4826	2120369	2121874	2	2120369|2120688	2120468|2121874	2120442	2121755	IDH1	orf19.12289|IPF22447.1|IPF11475.1|Contig4-3078_0035|orf6.7385|CA4753|IDH1.3	Predicted ORF in Assemblies 19, 20 and 21; soluble protein in hyphae; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2122136	2123675	+	orf19.4827	2122136	2123675	1	2122136	2123675	2122303	2123589	ADE12	orf19.12290|IPF22437.1|IPF11474.1|Contig4-3078_0033|orf6.7384|CA4752|CaO19.12290|CaO19.4827	Predicted enzyme of adenine biosynthesis; upregulated in biofilm; decreased expression in hyphae compared to yeast-form cells; not induced during GCN response, in contrast to the S. cerevisiae ortholog, which is induced by Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2123952	2126017	+	orf19.4828	2123952	2126017	2	2123952|2124481	2124414|2126017	2124372	2125967		orf19.12291|IPF22426.1|IPF11473.2|Contig4-3078_0031|orf6.7383|CA4751|CaO19.4828|CaO19.12291|IPF11473	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2126385	2128841	+	orf19.4829	2126385	2128841	1	2126385	2128841	2126419	2128704	DOA1	orf19.12292|IPF22371.1|IPF4477.2|Contig4-3078_0030|orf6.7382|CA4750|CaO19.12292|CaO19.4829|IPF4477	Protein with WD-repeats and a mellitin-like sequence, similar to S. cerevisiae Doa1p, which is involved in ubiquitin-mediated protein degradation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2128679	2129122	-	orf19.4830	2128679	2129122	1	2129122	2128679	2129071	2128739		orf19.12293|IPF22516.1|IPF4478.1|Contig4-3078_0029|orf6.7381|CaO19.4830|CaO19.12293	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2129771	2131460	+	orf19.4831	2129771	2131460	1	2129771	2131460	2129818	2131359		orf19.12294|IPF22422.1|IPF4481.1|Contig4-3078_0026|orf6.7380|CA4749|CaO19.12294|CFA1|CaO19.4831|IPF4481	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2132245	2134193	+	orf19.4833	2132245	2134193	1	2132245	2134193	2132388	2134043	MLS1	orf19.12296|IPF22415.1|IPF4483.1|Contig4-3078_0024|orf6.7378|CA4748|CaO19.12296|CaO19.4833	Malate synthase; enzyme of the glyoxylate cycle; peroxisomal; no mammalian homolog; transcription is induced upon phagocytosis by macrophage; regulated upon white-opaque switching; biofilm-repressed; strong oxidative stress induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2134295	2134999	+	orf19.4834	2134295	2134999	1	2134295	2134999	2134295	2134999		orf19.12297|IPF22473.1|IPF4484.1|Contig4-3078_0022|Contig4-3078_0023|orf6.7377|CA4747|CaO19.12297|CaO19.4834|IPF4484	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2134941	2136662	-	orf19.4835	2134941	2136662	1	2136662	2134941	2136601	2135018		orf19.12298|IPF22416.1|IPF4485.1|Contig4-3078_0021|orf6.7376|CA4746|CaO19.4835|CaO19.12298|IPF4485	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2136843	2138458	+	orf19.4836	2136843	2138458	1	2136843	2138458	2137047	2138381	URA1	orf19.12299|IPF22436.1|IPF4487.2|Contig4-3078_0020|orf6.7375|CA4745|CaO19.12299|CaO19.4836	Dihydroorotate dehydrogenase (DHODH); enzyme of de novo pyrimidine biosynthesis; putative bipartite mitochondrial targeting motif, membrane spanning region; transcription is regulated upon yeast-hyphal switch, or by Nrg1p, Mig1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2138496	2139715	-	orf19.4837.1	2138496	2139715	1	2139715	2138496	2139134	2138814			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2138538	2139494	+	orf19.4837	2138538	2139494	1	2138538	2139494	2138563	2139396		orf19.12300|IPF22462.1|IPF4489.2|Contig4-3078_0019|orf6.7374|CA4744|CaO19.4837|CaO19.12300|IPF4489	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2139804	2140842	+	orf19.4839	2139804	2140842	1	2139804	2140842	2139855	2140751		orf19.12302|IPF22455.1|IPF4491.1|Contig4-3078_0017|orf6.7372|CA4743|CaO19.4839|CaO19.12302|IPF4491	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2140745	2141951	-	orf19.4841	2140745	2141951	1	2141951	2140745	2141907	2140828	SHY1	orf19.12304|IPF22446.1|IPF4494.1|Contig4-3078_0016|orf6.7370|CA4742|CaO19.4841|CaO19.12304	Transcription is regulated by Nrg1p and Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2142313	2142825	+	orf19.4842	2142313	2142825	1	2142313	2142825	2142338	2142679		orf19.12305|IPF22509.1|IPF4495.1|Contig4-3078_0014|orf6.7369|CaO19.12305|CaO19.4842	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2142655	2145204	-	orf19.4843	2142655	2145204	1	2145204	2142655	2144968	2142773		orf19.12306|IPF22381.1|IPF4496.1|Contig4-3078_0013|orf6.7368|CA4741|CaO19.4843|CaO19.12306|IPF4496	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2145320	2146726	-	orf19.4844	2145320	2146726	1	2146726	2145320	2146676	2145531		orf19.12307|IPF22442.1|IPF4497.2|Contig4-3078_0012|orf6.7367|CA4740|CaO19.12307|CaO19.4844|IPF4497	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2146926	2147843	-	orf19.4845	2146926	2147843	1	2147843	2146926	2147583	2147062		orf19.12308|IPF22486.1|IPF4498.2|Contig4-3078_0010|orf6.7366|CA4739|CaO19.12308|CaO19.4845|IPF4498	Predicted ORF in Assemblies 19, 20 and 21; fluconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2148217	2149566	+	orf19.4846	2148217	2149566	1	2148217	2149566	2148256	2149497		orf19.12309|IPF4500|IPF22439.1|IPF4500.1|Contig4-3078_0008|orf6.7365|CA4738|CaO19.12309|CaO19.4846	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2148453	2148905	-	orf19.4847	2148453	2148905	1	2148905	2148453	2148905	2148453		IPF22481.1|IPF4499.1|orf6.7364	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2149739	2154111	+	orf19.4848	2149739	2154111	1	2149739	2154111	2149827	2154029	SKI3	orf19.12311|IPF22503.1|IPF4502.1|Contig4-3078_0006|orf6.7363|CA4737|CaO19.4848|CaO19.12311	Protein similar to S. cerevisiae Ski3p, which is required for repressing propagation of dsRNA viruses [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2154052	2155285	-	orf19.4849	2154052	2155285	1	2155285	2154052	2155073	2154090		orf19.12312|IPF22448.1|IPF4503.2|Contig4-3078_0005|orf6.7362|CA4736|STS1|CaO19.12312|CaO19.4849|IPF4503	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2155773	2155967	+	ntar_199	2155773	2155967	1	2155773	2155967					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2155974	2158129	-	orf19.4850	2155974	2158129	1	2158129	2155974	2157940	2156090		orf19.12313|IPF22396.1|IPF7726.2|Contig4-2920_0017|Contig4-3078_0001|orf6.7361|CA4735|CaO19.4850|CaO19.12313|IPF7726	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2158508	2160003	-	orf19.4851	2158508	2160003	1	2160003	2158508	2159971	2158787	TFA1	orf19.12314|IPF22440.1|IPF7729.1|Contig4-2920_0015|orf6.7360|CA4734|CaO19.12314|CaO19.4851	Protein with polyglutamate motifs and abundant Ser/Thr residues; described as a subunit of TFIIE, which is a basal transcription initiation factor of RNA Polymerase II [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2161277	2163420	+	orf19.4853	2161277	2163420	1	2161277	2163420	2161492	2163231	HCM1	orf19.12316|orf6.7358|IPF22406.1|IPF7732.2|Contig4-2920_0014|CA4733|CaO19.4853|CaO19.12316|IPF7732	Protein with forkhead domain; similar to S. cerevisiae Hcm1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2163383	2164133	-	orf19.4855	2163383	2164133	1	2164133	2163383	2164013	2163561	BUD31	orf19.12318|IPF22484.1|IPF7733.1|Contig4-2920_0013|orf6.7356|CA4732|CaO19.4855|CaO19.12318|IPF7733	Not subject to mating-type regulation, in contrast to the S. cerevisiae ortholog, which has a role in specification of the bud site [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2163534	2163706	+	ntar_200	2163534	2163706	1	2163534	2163706					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2164292	2164386	-	ts(cga)1	2164292	2164386	2	2164386|2164336	2164350|2164292				tS(CGA)1.2	tRNA-Ser predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2164391	2164661	+	ntar_201	2164391	2164661	1	2164391	2164661					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2166143	2167558	+	orf19.4856	2166143	2167558	1	2166143	2167558	2166143	2167558	LIP3	orf19.12319|IPF22432.1|IPF7736.2|Contig4-2920_0010|orf6.7355|CA4731|CaO19.4856|CaO19.12319	Secreted lipase, member of a lipase gene family whose members are expressed differentially in response to carbon source and during infection; may have a role in nutrition and/or in creating an acidic microenvironment [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2167588	2168979	-	orf19.4857	2167588	2168979	1	2168979	2167588	2168519	2167701		orf19.12320|IPF7737.2|IPF28260.1|Contig4-2920_0009|orf6.7354|CA4730|CaO19.12320|CaO19.4857|IPF7737	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2169433	2169628	+	ntar_202	2169433	2169628	1	2169433	2169628					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2169745	2172959	+	orf19.4858	2169745	2172959	1	2169745	2172959	2169829	2172714	VPS41	orf19.12321|orf19.12322|orf19.12323|IPF12249.2|IPF12250.3|IPF28261.1|IPF28247.1|IPF12252.2|IPF28264.1|Contig4-2920_0005|Contig4-2920_0006|orf6.7353|orf6.7352|orf6.687|CA4729|CA4728|orf19.4859|orf19.4860|VAM2|VPS41.5f	Protein similar to S. cerevisiae Vps41p, which is involved in vacuole organization and biogenesis; transposon mutation affects filamentous growth; regulated by Gcn4p; induced in response to amino acid starvation (3-aminotriazole treatment) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2172733	2173628	-	ntar_203	2172733	2173628	1	2173628	2172733					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2173072	2173884	+	orf19.4861	2173072	2173884	1	2173072	2173884	2173072	2173884		orf19.12324|IPF12253.1|IPF19185.1|Contig4-2920_0002|orf6.688|orf6.7351|CA4727|CaO19.4861|IPF12253	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2173815	2174898	-	orf19.4862	2173815	2174898	1	2174898	2173815	2174808	2174212		orf19.12326|IPF12255.2|IPF16153.2|Contig4-1868_0003|orf6.689|orf6.7349|CaO19.4862|CA4726|IPF12255	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2173946	2174230	+	orf19.4861.1	2173946	2174230	1	2173946	2174230	2173946	2174230		IPF12254.2|IPF19184.1|orf6.7350	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2174933	2175738	+	orf19.4862.2	2174933	2175738	2	2174933|2175235	2175133|2175738	2175074	2175498		IPF16152.1|IPF12257.1|Contig4-1868_0004|CA4725|PET100	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2175496	2178351	-	orf19.4863	2175496	2178351	1	2178351	2175496	2178173	2175663	PDC2	orf19.12327|IPF16151.2|IPF12258.2|Contig4-2286_0003|Contig4-2286_0005|orf6.442|orf6.690|orf6.7348|CA4724|CTA5|CaO19.4863	Transcriptional regulator of pyruvate decarboxylase; contains a putative C-terminal activation domain, Glu- and Pro-rich; complements glucose utilization defect of S. cerevisiae pdc2 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2178707	2180075	-	orf19.4864	2178707	2180075	1	2180075	2178707	2179911	2178997		orf19.12328|IPF18177.1|IPF16983.2|Contig4-2286_0002|orf6.441|orf6.7347|CA4723|YJU3|CaO19.4864|IPF18177	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2180919	2183131	+	orf19.4865	2180919	2183131	1	2180919	2183131	2181078	2182934		orf19.12329|IPF15617.2|IPF16984.3|Contig4-2255_0013|orf6.440|orf6.7346|CA4722|SAC1|CaO19.4865	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2183131	2185581	-	orf19.4866	2183131	2185581	1	2185581	2183131	2185137	2183344	CPP1	orf19.12330|IPF15616.2|IPF19180.2|Contig4-2255_0001|orf6.707|orf6.7345|CA4721|CaO19.4866	MAPK phosphatase of the VH1 family; regulates Cst20p-Hst7p-Cek1p-Cph1p hyphal growth pathway; required for wild-type virulence in mouse systemic infection; C516 is active site Cys; antigenic in human thrush; more mRNA in yeast than hyphae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2185611	2186127	-	ntar_204	2185611	2186127	1	2186127	2185611					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2185652	2186147	+	ntar_205	2185652	2186147	1	2185652	2186147					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2189021	2192841	-	orf19.4867	2189021	2192841	1	2192841	2189021	2192696	2189160	SWE1	orf19.12331|IPF10223.3|IPF28274.1|Contig4-1510_0001|Contig4-1510_0003|Contig4-2622_0001|orf6.2582|orf6.706|CA1200|CaO19.4867|IPF10223|IPF10223.2	Putative protein kinase with a role in control of growth and morphogenesis, required for full virulence; mutant cells are small, rounded, and sometimes binucleate; not required for filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2194863	2197051	+	orf19.4869	2194863	2197051	1	2194863	2197051	2195405	2196958	SFU1	orf19.12333|orf6.2584|IPF22421.1|IPF19906.1|Contig4-2622_0003|Contig4-2622_0004|CA1201|CaO19.12333|CaO19.4869|IPF19906	Transcriptional regulator of iron-responsive genes; represses some iron utilization genes when iron is present; not required for wild-type hyphal growth; has two GATA1-like zinc fingers separated by Cys-rich iron-sensing region [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2197121	2198925	+	orf19.4870	2197121	2198925	1	2197121	2198925	2197121	2198815	DBP3	orf19.12334|IPF10215.2|IPF17356.3|Contig4-2619_0001|Contig4-2622_0005|orf6.2585|orf6.3829|CA1202|CaO19.4870	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2199550	2201906	+	orf19.4871	2199550	2201906	1	2199550	2201906	2199912	2201654	ERO1	orf19.12335|IPF17353.3|IPF13354.2|Contig4-2619_0004|Contig4-2619_0005|orf6.2586|orf6.3830|CA2076|CaO19.4871	Protein described as similar to S. cerevisiae Ero1p, which has a role in formation of disulfide bonds in the endoplasmic reticulum; fluconazole-induced; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2202256	2203107	+	orf19.4872	2202256	2203107	1	2202256	2203107	2202256	2203107		orf19.12336|IPF13353|IPF22461.1|IPF13353.1|Contig4-2619_0009|orf6.3831|CA2077|CaO19.12336|CaO19.4872	Protein not essential for viability; possibly spurious ORF (Annotation Working Group prediction); transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2203490	2204310	-	orf19.4873	2203490	2204310	1	2204310	2203490	2204101	2203589		orf19.12337|IPF17929.2|IPF13352.1|Contig4-2619_0010|orf6.113|orf6.3832|CA2078|CaO19.4873|IPF13352	Predicted ORF in Assemblies 19, 20 and 21; expression is regulated upon white-opaque switching [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2205522	2207662	-	orf19.4874	2205522	2207662	1	2207662	2205522	2207407	2205587	MNN3	orf19.12338|IPF22402.1|IPF13350.2|Contig4-2619_0014|Contig4-2619_0015|orf6.112|orf6.3833|CA2079|CaO19.4874|MNN23	Predicted Golgi alpha-1,2-mannosyltransferase; mutation confers hypersensitivity to toxic ergosterol analog, and to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2208225	2209486	+	orf19.4875	2208225	2209486	1	2208225	2209486	2208671	2209159		orf19.12339|IPF22483.1|IPF9693.2|orf6.3834|CA2080|CaO19.4875|CWC21|CaO19.12339|IPF9693	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2209365	2212097	-	orf19.4878	2209365	2212097	1	2212097	2209365	2212048	2209502		orf19.12342|IPF22361.1|IPF9699.2|orf6.3837|CA2081|CaO19.12342|CaO19.4878|IPF9699	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2212150	2212927	-	orf19.4879.2	2212150	2212927	2	2212927|2212757	2212867|2212150	2212873	2212390	NTF2	IPF22508.1|IPF9700.2|Contig4-2738_0001|CA2082	ORF Predicted by Annotation Working Group; regulated by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2214100	2216268	+	orf19.4880	2214100	2216268	1	2214100	2216268	2214100	2216268		orf19.12344|IPF17533.2|IPF9703.2|IPF17532.3|Contig4-2738_0005|Contig4-2738_0006|orf6.3839|orf6.3840|orf6.1625|CA0598|CA6291|orf19.4881|CaO19.4880|YFW5|IPF9703.5f|IPF9703	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr1	2215891	2217406	-	orf19.4882	2215891	2217406	1	2217406	2215891	2217342	2216488		orf19.12345|IPF9704.2|IPF28259.1|Contig4-2738_0007|orf6.1624|orf6.3841|CA0597|TFA2|CaO19.4882|IPF9704	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2217599	2218337	+	ntar_206	2217599	2218337	1	2217599	2218337					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2217881	2220290	-	orf19.4883	2217881	2220290	1	2220290	2217881	2220202	2217971		orf19.12346|IPF9706.2|IPF18549.2|Contig4-2738_0012|orf6.1623|orf6.3842|CA0596|CaO19.4883|IPF9706	Predicted ORF in Assemblies 19, 20 and 21; constitutive expression independent of MTL or white-opaque status [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2222244	2222420	-	ntar_207	2222244	2222420	1	2222420	2222244					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2228559	2233168	+	orf19.4884	2228559	2233168	1	2228559	2233168	2230537	2232894	WOR1	orf19.12348|IPF22376.1|IPF15255.2|Contig4-2464_0001|orf6.3050|CA1512|EAP2|TOS9|YEL007W|CaO19.4884|CaO19.12348|IPF15255	Transcriptional regulator ("master switch") of white-opaque phenotypic switching; required to establish and maintain the opaque state; opaque-specific, nuclear; regulates its own expression; suggested role in regulation of adhesion factors [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2236338	2237713	+	orf19.4885	2236338	2237713	1	2236338	2237713	2236380	2237303	MIR1	orf19.12349|IPF22456.1|IPF7536.2|Contig4-2934_0003|orf6.3051|CA1513|CaO19.4885|CaO19.12349	Putative mitochondrial phosphate transporter; caspofungin repressed; expression is increased in a fluconazole-resistant isolate; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2239176	2239892	+	orf19.4886	2239176	2239892	1	2239176	2239892	2239176	2239892		orf19.12350|IPF22472.1|IPF7539.1|Contig4-2934_0006|orf6.3052|CA1514|CaO19.12350|CaO19.4886|IPF7539	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2240150	2242751	-	orf19.4887	2240150	2242751	1	2242751	2240150	2242520	2240214	ECM21	orf19.12352|IPF18663.2|IPF7541.3|Contig4-2934_0009|orf6.3053|orf6.3331|ECM21.3|CA1707|CaO19.4887|CA1515|IPF18663.1	Protein not essential for viability; similar to S. cerevisiae Ecm21p (may have cell wall role); alkaline upregulated by Rim101p; fluconazole induced; caspofungin repressed; downregulated in azole-resistant strain overexpressing MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2245376	2246489	+	orf19.4888	2245376	2246489	1	2245376	2246489	2245436	2246269		orf19.12353|IPF22460.1|IPF7543.2|Contig4-2934_0015|orf6.3332|CA1708|CaO19.12353|YRA1|CaO19.4888|IPF7543	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2246273	2248737	-	orf19.4889	2246273	2248737	1	2248737	2246273	2248267	2246513		orf19.12354|IPF22405.1|IPF7544.2|Contig4-2934_0016|orf6.3333|CA1709|HOL1|CaO19.4889|CaO19.12354|HOL2	Predicted membrane transporter, member of the drug:proton antiporter (12 spanner) (DHA1) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2249393	2252567	-	orf19.4890	2249393	2252567	1	2252567	2249393	2252473	2249543	CLA4	orf19.12355|IPF15972.3|IPF16297.2|Contig4-2934_0017|orf6.3334|orf6.53|CA1710|CaO19.4890	S/T kinase of Ste20p family; required for wild-type filamentous growth and for wild-type organ colonization and virulence in mouse systemic infection; role in chlamydospore formation; functional homolog of S. cerevisiae Cla4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2252793	2252950	-	ntar_208	2252793	2252950	1	2252950	2252793					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2255428	2257108	-	orf19.4892	2255428	2257108	1	2257108	2255428	2256855	2255638	TPK1	orf19.12357|IPF12285.2|IPF18622.2|Contig4-2955_0006|orf6.3336|orf6.4228|CA2355|TPK3|CaO19.4892	Catalytic subunit of cAMP-dependent protein kinase (PKA), isoform of Tpk2p; involved in control of morphogenesis and stress response; wild-type nuclear localization requires Bcy1p; produced during stationary but not exponential growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2259227	2263829	-	orf19.4893	2259227	2263829	1	2263829	2259227	2263716	2259391		orf19.12358|IPF12282|IPF22500.1|IPF12282.2|Contig4-2955_0011|Contig4-2955_0014|orf6.4229|CA2356|CaO19.12358|CaO19.4893	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2264029	2264907	-	orf19.4894	2264029	2264907	1	2264907	2264029	2264847	2264113		orf19.12359|IPF22469.1|IPF8957.2|IPF8957|Contig4-2955_0017|orf6.4230|CA2357|CaO19.12359|CaO19.4894	Protein of unknown function, has similarity to S. cerevisiae Yer010cp, which is a protein of unknown function belonging to the prokaryotic RraA family; decreased transcription is observed upon benomyl treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2265040	2265953	-	orf19.4895	2265040	2265953	1	2265953	2265040	2265944	2265123		orf19.12360|IPF22453.1|IPF8953.2|Contig4-2955_0019|Contig4-2955_0021|orf6.4231|CA2358|CaO19.12360|CaO19.4895|IPF8953	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2266205	2267112	-	orf19.4896	2266205	2267112	1	2267112	2266205	2267063	2266341		orf19.12361|IPF22470.1|IPF8952.1|Contig4-2955_0022|orf6.4232|CA2359|RPA34|CaO19.12361|CaO19.4896|IPF8952	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2267364	2268506	-	orf19.4897	2267364	2268506	1	2268506	2267364	2268407	2267445		orf19.12362|IPF22451.1|IPF8951.2|Contig4-2955_0023|orf6.4233|CA2360|CaO19.4897|CaO19.12362|IPF8951	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2268633	2269501	-	orf19.4898	2268633	2269501	1	2269501	2268633	2269357	2268668		orf19.12363|IPF8950.1|IPF28258.1|Contig4-2955_0025|orf6.4234|CA2361|CaO19.12363|CaO19.4898|IPF8950	Predicted ORF in Assemblies 19, 20 and 21; increased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2271539	2274379	+	orf19.4899	2271539	2274379	1	2271539	2274379	2271539	2274379	GCA1	orf19.12365|MP190|IPF22352.1|IPF8948.2|AMYG1|Contig4-2932_0006|Contig4-2955_0029|orf6.2026|orf6.4236|orf6.5799|orf6.649|CA0855|CaO19.4899	Predicted extracellular or plasma membrane-associated glucoamylase; promotes biofilm matrix formation; possible adhesin; gene is transcribed during rat oral infection; transcription is regulated by carbohydrates, pH, galactose [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2273092	2273321	-	ntar_209	2273092	2273321	1	2273321	2273092					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2276289	2279044	+	orf19.4900	2276289	2279044	1	2276289	2279044	2276399	2278885		orf19.12366|IPF17635.3|IPF8854.2|Contig4-2409_0001|orf6.2025|orf6.4237|CA0854|CaO19.4900|IPF8854	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2278801	2279364	-	ntar_210	2278801	2279364	1	2279364	2278801					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2279768	2281146	+	orf19.4901	2279768	2281146	1	2279768	2281146	2280112	2281146		orf19.12367|IPF18850.1|Contig4-2409_0004|orf6.2024|orf6.2023|orf6.1621|CA0595|CA6292|orf19.4902|CaO19.4901|IPF8856.5f|IPF8856|IPF8856.2	Predicted ORF in Assemblies 19, 20 and 21; merged with orf19.4902 in Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr1	2281308	2281916	+	ntar_211	2281308	2281916	1	2281308	2281916					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2281961	2282224	-	ntar_212	2281961	2282224	1	2282224	2281961					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2282064	2283498	+	orf19.4903	2282064	2283498	1	2282064	2283498	2282361	2283422		orf19.12368|IPF8860.1|IPF28257.1|Contig4-2762_0010|orf6.1620|CA0594|CaO19.12368|GPI12|CaO19.4903|IPF8860	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2283263	2284812	-	orf19.4904	2283263	2284812	1	2284812	2283263	2284784	2283444		orf19.12369|IPF22430.1|IPF8861.2|Contig4-2762_0009|orf6.1619|CA0593|CaO19.4904|ARP6|CaO19.12369	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2285421	2287271	+	orf19.4905	2285421	2287271	1	2285421	2287271	2285620	2287173		orf19.12370|IPF8862.2|IPF28254.1|Contig4-2762_0006|orf6.1618|CA0592|CaO19.4905|IPF8862	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2287182	2289577	-	orf19.4906	2287182	2289577	1	2289577	2287182	2289577	2287271		orf19.12372|IPF17082.3|IPF8866.2|Contig4-2762_0005|orf6.1617|orf6.430|orf6.699|CA0076|CaO19.4906|IPF8866	Putative protein of unknown function, transcription is positively regulated by Tbf1p; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2292642	2295120	-	orf19.4907	2292642	2295120	1	2295120	2292642	2294809	2292992		orf19.12373|IPF22400.1|IPF17283.2|Contig4-2762_0012|orf6.3754|CA2021|CaO19.12373|CaO19.4907|IPF17283	Predicted ORF in Assemblies 19, 20 and 21; increased transcription is observed upon fluphenazine treatment; possibly transcriptionally regulated by Tac1p; induced by nitric oxide; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2295403	2295622	-	ntar_213	2295403	2295622	1	2295622	2295403					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2295578	2295913	+	orf19.4908	2295578	2295913	1	2295578	2295913	2295578	2295913		orf19.12374|IPF22515.1|IPF9610.2|Contig4-2018_0002|orf6.3755|CaO19.12374|CaO19.4908	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2296678	2299449	-	orf19.4909	2296678	2299449	1	2299449	2296678	2299136	2296938	CBK1	orf19.12375|IPF22379.1|IPF9611.2|Contig4-2855_0009|orf6.3756|CA2022|CaO19.12375|CaO19.4909	Putative S/T kinase of cell wall integrity pathway; required for hyphal growth; mutant cells show abnormal morphology and aggregation; Mob2p associated; required for wild-type transcriptional regulation of several cell-wall-associated genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2296995	2297176	+	ntar_214	2296995	2297176	1	2296995	2297176					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2299716	2300901	-	orf19.4909.1	2299716	2300901	2	2300901|2300348	2300707|2299716	2300710	2300032	RPL42	IPF22520.1|IPF9613.2|Contig4-2508_0008|CA2023|RPL42.3	ORF Predicted by Annotation Working Group; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2301150	2302260	-	orf19.4910	2301150	2302260	1	2302260	2301150	2302038	2301286	FGR41	orf19.12376|PGA35|IPF22465.1|IPF9616.1|Contig4-2508_0005|orf6.3757|CA2024|CaO19.12376|CaO19.4910|IPF9616	Putative GPI-anchored protein; transposon mutation affects filamentous growth; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2304036	2305399	+	orf19.4911	2304036	2305399	1	2304036	2305399	2304212	2305174		orf19.8596|orf19.12377|IPF17046.3|IPF9618.2|IPF26300.1|IPF29610.1|Contig4-2508_0004|orf6.580|orf6.3758|CA2025|orf19.981|CaO19.4911|CaO19.12377|IPF9618	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2305250	2307357	-	orf19.4912	2305250	2307357	1	2307357	2305250	2307229	2305295		orf19.8598|orf19.12378|IPF22445.1|IPF9619.2|IPF9924.2|IPF17048.2|Contig4-2508_0003|orf6.578|orf6.5815|orf6.3759|CA0121|orf19.983|CaO19.4912|CaO19.12378	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2307432	2308146	-	ntar_215	2307432	2308146	1	2308146	2307432					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2309139	2310647	+	orf19.984	2309139	2310647	1	2309139	2310647	2309139	2310647	PHO8	orf19.8599|orf6.5814|IPF26293.1|IPF9926.2|Contig4-2694_0008|CA3530|CaO19.8599|CaO19.984|IPF9926	Protein of unknown function; transcription is positively regulated by Rim101p; regulated by Tsa1p, Tsa1Bp in minimal media at 37 deg; possibly adherence-induced [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr1	2311158	2314090	+	orf19.985	2311158	2314090	1	2311158	2314090	2311282	2313795		orf19.8600|IPF9929.2|IPF18934.2|Contig4-2694_0006|orf6.1594|orf6.5813|CA3529|CaO19.985|IPF9929	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2315098	2316381	+	orf19.986	2315098	2316381	1	2315098	2316381	2315247	2316368	GLY1	orf19.8601|IPF9931.1|IPF6766.1|Contig4-2262_0004|Contig4-2694_0002|orf6.1595|orf6.5812|CA3528|GLY1-1|GLY1-2|GLY11|CaO19.986	L-threonine aldolase; possibly tetrameric; complements the glycine auxotrophy of an S. cerevisiae shm1 null shm2 null gly1-1 triple mutant; macrophage/pseudohyphal-induced; the GLY1 locus has an RFLP and is triploid in strain SGY269 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2316564	2318145	+	orf19.988	2316564	2318145	1	2316564	2318145	2316720	2317952		orf19.8603|IPF9934.1|IPF6770.1|Contig4-2262_0003|Contig4-2694_0001|orf6.1597|orf6.5810|CA3527|CaO19.988|IPF9934	Predicted ORF in Assemblies 19, 20 and 21; fungal-specific (no human or murine homolog); transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; possibly transcriptionally regulated upon hyphal formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2318281	2319629	+	orf19.989	2318281	2319629	1	2318281	2319629	2318337	2319347		orf19.8604|IPF9936.2|IPF6773.2|IPF20059.1|Contig4-2262_0002|orf6.5809|orf6.1598|CA6251|CA3526|orf19.990.1|MRPS5|MRPS5.5f|MRPS5.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2319708	2321365	+	orf19.991	2319708	2321365	1	2319708	2321365	2319827	2321353	DJP1	orf19.8606|orf6.5807|IPF6776.2|IPF18933.2|Contig4-2932_0022|CA3525|CaO19.991|CaO19.8606	Similar to bacterial DnaJ; reported to have a role in peroxisome biogenesis; transcriptionally regulated by iron; expression greater in low iron; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2321596	2323579	+	orf19.992	2321596	2323579	1	2321596	2323579	2321637	2323508	LKH1	orf19.8607|IPF26288.1|IPF6778.2|Contig4-2932_0021|orf6.5806|LKH1.3|CA3524|CaO19.8607|CaO19.992|LKH1.3f	Protein repressed during the mating process; Hog1p-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2323934	2324874	+	orf19.993	2323934	2324874	1	2323934	2324874	2324072	2324596		orf19.8608|IPF26298.1|IPF20135.1|Contig4-2932_0019|orf6.5805|CA3523|DOP98|CaO19.993|CaO19.8608|IPF20135	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2325499	2326958	-	ntar_216	2325499	2326958	1	2326958	2325499	2326151	2325813			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2325641	2326189	+	orf19.994	2325641	2326189	1	2325641	2326189	2325641	2326189			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2327329	2329275	+	orf19.996	2327329	2329275	1	2327329	2329275	2327422	2329275		orf19.8611|IPF26290.1|IPF6784.2|Contig4-2932_0013|Contig4-2932_0014|orf6.5802|CA3521|LPF7|CaO19.8611|CaO19.996|IFA15	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr1	2329619	2329892	-	ntar_217	2329619	2329892	1	2329892	2329619					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2330036	2331004	+	orf19.997	2330036	2331004	1	2330036	2331004	2330255	2330854		orf19.8612|IPF18325.2|IPF6785.1|Contig4-2932_0011|orf6.5801|CA3520|SNL1|CaO19.997|CaO19.8612|IPF6785	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2330811	2332636	-	orf19.998	2330811	2332636	1	2332636	2330811	2332552	2330990		orf19.8613|IPF6787|IPF6787.1|IPF29608.1|Contig4-2932_0010|orf6.5800|CA3519|CaO19.8613|CaO19.998	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2332840	2335930	-	orf19.999	2332840	2335930	1	2335930	2332840	2335782	2332942	GCA2	IPF16527.3|IPF16526.2|Contig4-2932_0004|orf6.5798|orf6.5799|CA3518|GCA1|AMYG2.5f|AMYG2|IPF6791.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2333961	2334170	+	ntar_218	2333961	2334170	1	2333961	2334170	2333961	2334146			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2336984	2339580	-	orf19.1002	2336984	2339580	1	2339580	2336984	2339580	2337688		orf19.8618|IPF26289.1|IPF15371.2|orf6.5795|CA3517|CaO19.8618|LPF8|CaO19.1002|IFA22	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2339779	2340053	+	ntar_219	2339779	2340053	1	2339779	2340053					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2340578	2342386	-	orf19.1005	2340578	2342386	1	2342386	2340578	2342386	2340578		orf19.8619|IPF19532.1|IPF18326.1|IPF15368.2|Contig4-1962_0003|orf6.5794|orf6.581|CA6182|orf19.1003|CaO19.1005|LPF10	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2343905	2344838	-	orf19.1830	2343905	2344838	1	2344838	2343905	2344641	2344309		orf19.9389|IPF25491.1|IPF16475.1|Contig4-1874_0001|orf6.1220|CaO19.9389|CaO19.1830	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2345045	2345272	+	ntar_220	2345045	2345272	1	2345045	2345272					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2346663	2347357	+	ntar_221	2346663	2347357	1	2346663	2347357					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2348403	2348572	+	ntar_222	2348403	2348572	1	2348403	2348572					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2348672	2349094	-	orf19.1831	2348672	2349094	1	2349094	2348672	2349094	2348672		IPF29291.1|Contig4-2756_0003|orf6.1221|CaO19.1831	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2349879	2351851	+	orf19.1832	2349879	2351851	1	2349879	2351851	2349943	2351736	FCY23	orf19.9390|IPF10337.1|IPF29289.1|Contig4-2756_0005|orf6.4254|CA2374|CaO19.1832|TPN11|CaO19.9390	Putative transporter; Gcn4p-regulated; more similar to S. cerevisiae Tpn1p, which is a vitamin B6 transporter, than to purine-cytosine permeases [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2351555	2352310	-	ntar_223	2351555	2352310	1	2352310	2351555					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2352474	2354143	+	orf19.1833	2352474	2354143	1	2352474	2354143	2352602	2354041		orf19.9391|IPF25486.1|IPF10336.1|Contig4-2756_0007|orf6.4253|CA2373|CaO19.9391|CBF5|CaO19.1833	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2354109	2356979	-	orf19.1834	2354109	2356979	1	2356979	2354109	2356937	2354205		orf19.9392|IPF25484.1|IPF10335.2|Contig4-2756_0008|Contig4-2756_0009|orf6.4252|CA2372|CaO19.1834|CaO19.9392|IPF10335	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2357206	2359419	-	orf19.1835	2357206	2359419	1	2359419	2357206	2359254	2357350		orf19.9393|IPF25485.1|IPF10333.2|Contig4-2756_0010|Contig4-2756_0011|orf6.4251|CA2371|CaO19.9393|CaO19.1835|IPF10333	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2361016	2362471	+	orf19.1836	2361016	2362471	1	2361016	2362471	2361077	2362432	APN2	orf19.9394|IPF25487.1|IPF10847.1|Contig4-2684_0005|Contig4-2756_0014|orf6.4250|CA2370|CaO19.1836|CaO19.9394	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2362001	2362433	-	ntar_224	2362001	2362433	1	2362433	2362001					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2362615	2364006	+	orf19.1837	2362615	2364006	1	2362615	2364006	2362662	2363378	TBP1	orf19.9395|IPF25489.1|IPF10845.1|Contig4-2684_0004|orf6.4249|CA2369|CaO19.1837|CaO19.9395	Transcription initiation factor; binds TATA box sequence, and binding does not require TFIIA; caspofungin repressed; functional homolog of S. cerevisiae and human TATA-binding proteins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2364134	2369345	-	orf19.1839	2364134	2369345	1	2369345	2364134	2369345	2364348	RPA190	orf19.9397|IPF25490.1|IPF10842.2|Contig4-2684_0001|Contig4-2684_0002|orf6.4247|CA2368|CaO19.9397|CaO19.1839	Predicted ORF in Assemblies 19, 20 and 21;flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2369621	2373569	-	orf19.1840	2369621	2373569	2	2373569|2373405	2373497|2369621	2373535	2369758		orf19.9889|orf19.9398|IPF25488.1|IPF10840.2|IPF24966.1|IPF13383.2|orf6.4246|orf6.4199|CA6195|CA2336|orf19.2353|CaO19.1840|CaO19.9398|IPF10840.3eoc	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2373911	2375073	+	orf19.2352	2373911	2375073	1	2373911	2375073	2374045	2375019		orf19.9888|IPF24994.1|IPF13379.2|Contig4-2380_0004|orf6.4200|CA2337|CaO19.2352|CaO19.9888|IPF13379	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2374912	2376016	-	orf19.2351	2374912	2376016	1	2376016	2374912	2375969	2375064	NIT3	orf19.9887|IPF24993.1|IPF13378.1|Contig4-2380_0005|orf6.4201|CA2338|CaO19.9887|CaO19.2351	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2376145	2377803	-	orf19.2350	2376145	2377803	1	2377803	2376145	2377776	2376214		orf19.9886|IPF13377|IPF24976.1|IPF13377.2|Contig4-2380_0006|Contig4-2380_0007|orf6.4202|YOR378W|CA2339|CaO19.9886|CaO19.2350	Protein similar to S. cerevisiae Yor0378wp; transposon mutation affects filamentous growth; not essential for viability; member of MFS family of transporters; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2378638	2380759	-	orf19.2347	2378638	2380759	1	2380759	2378638	2380617	2378824	MNN2	orf19.9883|MNN5|IPF19382.2|IPF15847.2|orf6.233|orf6.4205|CA2340|CaO19.2347|MNN25	Alpha-1,2-mannosyltransferase; likely involved in iron utilization in the endocytosis pathway under iron-limiting conditions; similar to S. cerevisiae Mnn2p and Mnn5p; transposon mutation affects filamentous growth; filament induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2381419	2383519	+	orf19.2346	2381419	2383519	1	2381419	2383519	2381550	2383424		orf19.9882|IPF24974.1|IPF13838.2|Contig4-3011_0001|orf6.4206|CA2341|CaO19.9882|FMP40|CaO19.2346|IPF13838	Putative protein of unknown function, transcription is positively regulated by Tbf1p; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2383485	2384873	-	orf19.2344	2383485	2384873	1	2384873	2383485	2384713	2383556	ASR1	orf19.9880|IPF13836|IPF24991.1|IPF13836.2|Contig4-3011_0003|orf6.4208|CA2342|CaO19.2344|DHN6	Protein described as similar to heat shock proteins; transcription regulated by cAMP, osmotic stress, ciclopirox olamine, ketoconazole; negatively regulated by Cyr1p, Ras1p; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2385594	2385936	-	ntar_225	2385594	2385936	1	2385936	2385594	2385719	2385594			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2386198	2386733	-	orf19.2343.1	2386198	2386733	2	2386733|2386588	2386663|2386198	2386670	2386378			Pseudogene; added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2386820	2388377	+	orf19.2343	2386820	2388377	1	2386820	2388377	2386859	2388307	VPS23	orf19.9879|IPF24985.1|IPF8671.2|Contig4-3011_0008|orf6.4209|CA2343|CaO19.2343|CaO19.9879|IPF8671	Protein involved in proteolytic activation of Rim101p, which regulates pH response; similar to S. cerevisiae Stp22p/Vps23p, which is a member of the ESCRT I protein sorting complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2388505	2389282	+	orf19.2342	2388505	2389282	1	2388505	2389282	2388535	2389188	SFT2	orf19.9878|IPF25003.1|IPF8674.2|Contig4-3011_0009|orf6.4210|CA2344|SFT22|SFT21|CaO19.2342|CaO19.9878	Transcription is regulated by Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2389103	2389951	-	orf19.2341	2389103	2389951	1	2389951	2389103	2389729	2389271	HNT1	orf19.9877|IPF25010.1|IPF8675.2|Contig4-3011_0010|orf6.4211|CA2345|CaO19.2341|CaO19.9877	Predicted ORF in Assemblies 19, 20 and 21; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2390726	2393448	+	orf19.2340	2390726	2393448	1	2390726	2393448	2390766	2393246	CDC48	orf19.9876|IPF8680.2|IPF29137.1|Contig4-3011_0012|orf6.5568|CA3333|CaO19.2340|CaO19.9876	Protein described as microsomal ATPase; regulated by Gcn2p and Gcn4p; induced in response to amino acid starvation (3-aminotriazole treatment); macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2393436	2395279	-	orf19.2337	2393436	2395279	1	2395279	2393436	2395239	2393608	ALP1	orf19.9873|IPF24975.1|IPF8681.1|Contig4-3011_0014|orf6.5571|CA3334|LYP2|CaO19.9873|CaO19.2337	Putative high-affinity basic amino acid permease; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2396292	2396900	+	orf19.2336	2396292	2396900	1	2396292	2396900	2396292	2396900		orf19.9872|IPF25004.1|IPF8682.1|Contig4-3011_0016|orf6.5572|CA3335|CaO19.9872|CaO19.2336|IPF8682	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2396788	2398444	-	orf19.2335	2396788	2398444	1	2398444	2396788	2398373	2396883		orf19.9871|IPF24979.1|IPF19983.1|Contig4-3011_0017|orf6.5573|CA3336|CaO19.2335|CaO19.9871|IPF19983	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorouracil (5-FU); Hog1p-induced; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2398572	2399695	+	orf19.2334	2398572	2399695	1	2398572	2399695	2398600	2399568	BIG1	orf19.9870|IPF24995.1|IPF13583.2|Contig4-3011_0019|orf6.5574|CA3337|CaO19.2334|CaO19.9870|IPF13583	Protein of the endoplasmic reticulum required for beta-1,6-glucan synthesis, filamentation, adhesion, and virulence; ortholog of S. cerevisiae Big1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2399593	2401504	-	orf19.2333	2399593	2401504	1	2401504	2399593	2401214	2399724		orf19.9869|IPF24983.1|IPF13582.2|Contig4-3011_0021|orf6.5575|CA3338|CaO19.9869|CaO19.2333|IPF13582	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2403598	2404392	+	orf19.2332	2403598	2404392	1	2403598	2404392	2403598	2404392		orf19.9868|IPF24999.1|IPF20131.1|Contig4-2080_0004|Contig4-3011_0030|orf6.5576|CA3339|CaO19.2332|CaO19.9868|IPF20131	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2404282	2406211	-	orf19.2331	2404282	2406211	1	2406211	2404282	2405785	2404448	ADA2	orf19.9867|IPF24987.1|IPF15288.1|Contig4-2080_0003|orf6.5577|CAS3|CA3340|CaO19.9867|CaO19.2331	Putative transcriptional coactivator; cell wall integrity role; required for wild-type transcriptional response to caspofungin; mutant is caspofungin hypersensitive; role in regulation with Cas5p; zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2406458	2407578	+	orf19.2329.1	2406458	2407578	2	2406458|2406974	2406594|2407578	2406592	2407384	RPS17B	IPF25018.1|IPF15290.2|Contig4-2080_0001|CA3341|RPS17|RPS17.3	Putative ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2407813	2409298	+	orf19.2330	2407813	2409298	1	2407813	2409298	2407857	2409152		orf19.9866|IPF24986.1|IPF13361.2|orf6.5578|YOR205C|CA3342|CaO19.9866|UTP6|CaO19.2330|IPF13361	Predicted ORF in Assemblies 19, 20 and 21; transposon mutation affects filamentous growth; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2408807	2410098	-	orf19.2328	2408807	2410098	1	2410098	2408807	2409985	2409149		orf19.9864|IPF24998.1|IPF13360.2|Contig4-2414_0001|orf6.5580|CA3343|CaO19.9864|CaO19.2328|IPF13360	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2410353	2410460	-	ti(uau)1	2410353	2410460	2	2410460|2410388	2410424|2410353				tI(UAU)1.2	tRNA-Ile predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2410923	2412515	-	orf19.2326	2410923	2412515	1	2412515	2410923	2412442	2410985		orf19.9862|IPF24982.1|IPF13359.2|Contig4-2414_0003|Contig4-2414_0004|orf6.5582|CA3344|ESC2|CaO19.9862|CaO19.2326|IPF13359	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2412641	2414581	+	orf19.2325	2412641	2414581	1	2412641	2414581	2412665	2414218		orf19.9861|IPF24978.1|IPF13357.2|Contig4-2414_0006|orf6.5583|CA3345|TFC6|CaO19.2325|CaO19.9861|IPF13357	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2414071	2415610	-	orf19.2324	2414071	2415610	1	2415610	2414071	2415599	2414283	UBA4	orf19.9860|IPF24989.1|IPF13356.2|Contig4-2414_0007|orf6.5584|CA3346|CaO19.9860|CaO19.2324|IPF13356	Predicted ORF in Assemblies 19, 20 and 21; increased expression in response to prostaglandins; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2415765	2416694	-	orf19.2322.3	2415765	2416694	2	2416694|2416345	2416408|2415765	2416629	2415911		IPF25016.1|IPF15563.2|Contig4-1946_0001|CA3347|ERP5	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2416828	2418349	-	orf19.2320	2416828	2418349	1	2418349	2416828	2418349	2416868		orf19.9856|IPF24981.1|IPF15559.2|Contig4-1946_0004|orf6.5588|CA3348|CaO19.2320|RIO1|CaO19.9856	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2418454	2419516	+	orf19.2318.1	2418454	2419516	2	2418454|2418649	2418578|2419516	2418540	2419305		IPF19588.1|IPF19589.2|Contig4-2539_0012|orf6.503|CA3349|IPF19588	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2419710	2422020	+	orf19.2319	2419710	2422020	1	2419710	2422020	2419750	2421768		orf19.9855|IPF18350.2|IPF16479.2|Contig4-2539_0011|orf6.504|orf6.5589|CA0098|CaO19.2319|IPF16479	Predicted ORF in Assemblies 19, 20 and 21; downregulated in core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2422966	2423899	+	orf19.2317	2422966	2423899	1	2422966	2423899	2423366	2423899		orf19.9853|IPF25005.1|IPF13777.1|Contig4-2539_0007|orf6.5533|CA3299|CaO19.9853|CaO19.2317|IPF13777	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr1	2423903	2425835	-	orf19.2315	2423903	2425835	1	2425835	2423903	2425723	2424161		orf19.9851|IPF24980.1|IPF13780.2|Contig4-2539_0004|Contig4-2539_0005|orf6.5535|CA3300|RTG3|CaO19.2315|CaO19.9851	Putative transcription factor with bZIP DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2426191	2426927	-	orf19.2314	2426191	2426927	1	2426927	2426191	2426899	2426492		orf19.9850|IPF25009.1|IPF13782.2|Contig4-2539_0003|orf6.5536|CA3301|CaO19.9850|CaO19.2314|IPF13782	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2427040	2428494	-	orf19.2313	2427040	2428494	1	2428494	2427040	2428398	2427208		orf19.9849|IPF24990.1|IPF13784.2|Contig4-2539_0001|orf6.5537|CA3302|CaO19.9849|CaO19.2313|IPF13784	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2429153	2429351	+	ntar_226	2429153	2429351	1	2429153	2429351					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2429339	2432072	-	ntar_227	2429339	2432072	1	2432072	2429339	2431191	2431015			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2430115	2432154	+	orf19.2312	2430115	2432154	1	2430115	2432154	2430115	2432154		orf19.9848|IPF24972.1|IPF15397.2|FRE3|FRE11|FRE42|Contig4-2919_0013|orf6.5538|CA3303|CFL11|CaO19.9848|CaO19.2312	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; similar to ferric reductase Fre10p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2432412	2433574	+	orf19.2311	2432412	2433574	2	2432412|2432795	2432457|2433574	2432455	2433574	RPL82	orf19.9847|IPF25000.1|IPF11736.2|RPL8B-2|Contig4-2919_0011|orf6.5539|CA3304|RPL8A|CaO19.2311|CaO19.9847	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2433925	2434446	+	orf19.2310.1	2433925	2434446	2	2433925|2434126	2433925|2434446	2434130	2434321	RPL29	IPF24965.1|IPF11737.2|CA3305	Ribosomal protein L29; transcription is induced upon germ tube formation; shows colony morphology-related gene regulation by Ssn6p; intron in 5'-UTR [label_first_exon=CGD label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2434657	2435748	+	orf19.2310	2434657	2435748	2	2434657|2434840	2434757|2435748	2434657	2435635		orf19.9846|IPF24997.1|IPF11738.2|Contig4-2919_0009|orf6.5540|CA3306|CaO19.9846|CaO19.2310|IPF11738	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2435450	2435587	-	ntar_228	2435450	2435587	1	2435587	2435450					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2435727	2437078	-	orf19.2309.2	2435727	2437078	2	2437078|2436635	2437040|2435727	2437043	2435875	RPL2	IPF11739.1|IPF19095.2|Contig4-2919_0008|CA3307|RPL2.3	ORF Predicted by Annotation Working Group; shows downregulation in infected rabbit kidney in SC5314, but not NGY152, strain background [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2438098	2440482	+	orf19.2309	2438098	2440482	1	2438098	2440482	2438200	2440317		orf19.9845|IPF11742.2|IPF19092.1|IPF19093.1|Contig4-2919_0005|orf6.5541|orf6.943|CA3308|PET127|PET127.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2441063	2441258	-	ntar_229	2441063	2441258	1	2441258	2441063	2441219	2441097			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2441949	2443231	+	orf19.2308	2441949	2443231	1	2441949	2443231	2442032	2443117		orf19.9844|IPF8806.2|IPF19091.2|Contig4-2919_0002|orf6.5542|CA3309|CaO19.2308|IPF8806	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2443222	2445105	-	orf19.2307	2443222	2445105	1	2445105	2443222	2445056	2443425		orf19.9843|IPF24977.1|IPF8808.2|Contig4-2919_0001|orf6.5543|CA3310|PFS2|CaO19.2307|CaO19.9843	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2445533	2446302	+	orf19.2306	2445533	2446302	1	2445533	2446302	2445609	2446145		orf19.9842|IPF25007.1|IPF8809.2|Contig4-2749_0015|orf6.5544|CA3311|CaO19.9842|CaO19.2306|IPF8809	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2445902	2446670	-	orf19.2305	2445902	2446670	1	2446670	2445902	2446615	2446241		orf19.9841|IPF25017.1|IPF8810.1|Contig4-2749_0014|orf6.5545|CA3312|GIM4|CaO19.2305|CaO19.9841|IPF8810	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2446876	2448032	-	orf19.2304	2446876	2448032	1	2448032	2446876	2447981	2446953		orf19.9840|IPF24992.1|IPF8811.2|Contig4-2749_0012|orf6.5546|YIL041W|CA3313|CaO19.2304|CaO19.9840|IPF8811	Protein similar to S. cerevisiae Yil041wp; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2448598	2449488	+	orf19.2303	2448598	2449488	1	2448598	2449488	2448714	2449415	FGR16	orf19.9839|IPF25001.1|IPF8812.2|Contig4-2749_0011|orf6.5547|CA3314|PRP38|CaO19.2303|CaO19.9839|IPF8812	Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth; fluconazole-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2449657	2451282	+	orf19.2302	2449657	2451282	1	2449657	2451282	2449721	2451190		orf19.9838|IPF24984.1|IPF8814.2|Contig4-2749_0008|Contig4-2749_0009|orf6.5548|CA3315|CSG2|CaO19.9838|CaO19.2302|IPF8814	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2450334	2450504	-	ntar_230	2450334	2450504	1	2450504	2450334					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2450778	2451197	-	ntar_231	2450778	2451197	1	2451197	2450778					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2451437	2452225	+	orf19.2301	2451437	2452225	1	2451437	2452225	2451516	2452211		orf19.9837|IPF25002.1|IPF8817.2|Contig4-2749_0007|orf6.5549|CA3316|CaO19.2301|CaO19.9837|IPF8817	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2452045	2452678	-	orf19.2299	2452045	2452678	1	2452678	2452045	2452546	2452241		orf19.9835|IPF25027.1|IPF8818.2|orf6.5551|CA3317|URM1|CaO19.2299|CaO19.9835	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2452991	2454426	+	orf19.2298	2452991	2454426	1	2452991	2454426	2453068	2454381		orf19.9834|IPF24988.1|IPF8820.1|Contig4-2749_0003|orf6.1375|orf6.5552|CA3318|WBP1|CaO19.9834|CaO19.2298	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2454042	2454652	-	ntar_232	2454042	2454652	1	2454652	2454042					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2454769	2456263	+	orf19.2297	2454769	2456263	1	2454769	2456263	2455016	2455786	ARL3	orf19.9833|IPF8822.3|IPF14275.1|Contig4-2749_0002|orf6.1374|orf6.5553|CA0447|CaO19.2297|IPF14275	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2457070	2465020	+	orf19.2296	2457070	2465020	1	2457070	2465020	2457135	2464790		orf19.8300|orf19.9831|IPF25023.1|IPF14282.3|IPF7715.3|IPF29744.1|Contig4-2776_0014|orf6.1793|orf6.3697|orf6.1373|CA0446|CA0706|orf19.682|CaO19.2296|IPF14282.5eoc|IPF14282|IPF14282.2	Predicted ORF in Assemblies 19, 20 and 21; similar to mucins; ketoconazole-induced; fluconazole-downregulated; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type; colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2464996	2467311	-	orf19.681	2464996	2467311	1	2467311	2464996	2467031	2465127	HAP43	orf19.8298|orf6.1795|IPF7711.2|IPF18253.2|Contig4-2776_0004|orf6.6574|CA0707|CaO19.681|IPF7711	CCAAT-binding factor (CBF)-dependent transcription factor required for iron-limitation response; similar to transcription factor AP-1; transcription is negatively regulated by Sfu1p; ciclopirox olamine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2468051	2469681	-	orf19.680	2468051	2469681	1	2469681	2468051	2469636	2468227		orf19.8297|IPF18893.2|IPF7706.2|Contig4-2776_0008|orf6.1796|orf6.6573|CA4115|TIM50|CaO19.680|IPF7706	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2469795	2470538	+	orf19.679	2469795	2470538	1	2469795	2470538	2469859	2470422	FGR39	orf19.8296|IPF26643.1|IPF7704.2|Contig4-2776_0010|orf6.6572|CA4114|CaO19.8296|CaO19.679|IPF7704	Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2470418	2471449	-	orf19.677	2470418	2471449	1	2471449	2470418	2471379	2470558	CHO1	orf19.8294|IPF26635.1|IPF7703.2|Contig4-2776_0011|orf6.6570|CA4113|CaO19.8294|CaO19.677	Putative phosphatidylserine synthase; similar to S. cerevisiae Cho1p, which is involved in phosphatidylserine biosynthesis; transposon mutation affects filamentous growth; regulated by Nrg1p, Tup1p; no human or murine homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2472627	2473723	+	orf19.676	2472627	2473723	1	2472627	2473723	2472723	2473619		orf19.8293|IPF26634.1|IPF7699.2|Contig4-2917_0021|orf6.6569|CA4112|CaO19.676|BIM1|CaO19.8293	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2473688	2474168	-	orf19.675.1	2473688	2474168	1	2474168	2473688	2474092	2473955			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2474600	2474876	-	ntar_233	2474600	2474876	1	2474876	2474600					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2475428	2476355	+	orf19.675	2475428	2476355	1	2475428	2476355	2475597	2476235		orf19.8292|orf6.131|IPF7692.2|IPF3964.2|Contig4-2917_0017|orf6.6568|CA4111|CaO19.675|IPF3964	Similar to cell wall proteins; induced in core stress response, core caspofungin response; iron-regulated; amphotericin B induced; regulated by Cyr1p, Ssn6p; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2476545	2478074	+	orf19.674	2476545	2478074	1	2476545	2478074	2476813	2477904		orf19.8291|IPF26630.1|IPF3965.2|Contig4-2917_0014|orf6.6567|CA4110|CWC2|CaO19.8291|CaO19.674|IPF3965	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2478125	2479234	+	orf19.673	2478125	2479234	1	2478125	2479234	2478125	2479234		orf19.8290|IPF26633.1|IPF3967.2|Contig4-2917_0012|orf6.6566|CA4109|CaO19.8290|OYE98|CaO19.673|IPF3967	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2478851	2481004	-	orf19.672	2478851	2481004	1	2481004	2478851	2480984	2479239		orf19.8289|IPF26626.1|IPF3968.1|Contig4-2917_0010|Contig4-2917_0011|orf6.6565|CA4108|CaO19.8289|PRP28|CaO19.672|IPF3968	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2481131	2483836	-	orf19.671	2481131	2483836	1	2483836	2481131	2483510	2481501	PSP1	orf19.8288|IPF26617.1|IPF3970.2|Contig4-2917_0009|orf6.6564|CA4107|CaO19.671|IPF3970	Protein repressed during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2484061	2484575	+	ntar_234	2484061	2484575	1	2484061	2484575	2484061	2484276			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2485023	2485756	-	orf19.670.2	2485023	2485756	2	2485756|2485474	2485557|2485023	2485587	2485275		IPF26615.1|IPF20159.1|CA4106|IPF20159	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2486263	2486782	+	ntar_235	2486263	2486782	1	2486263	2486782	2486263	2486448			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2486955	2487529	-	orf19.670	2486955	2487529	1	2487529	2486955	2487456	2487148	SMT3	orf19.8287|IPF26656.1|IPF20158.1|Contig4-2322_0001|Contig4-2917_0002|orf6.6563|CA4105|CaO19.8287|CaO19.670	SUMO, small ubiquitin-like protein; Smt3p-conjugated proteins localize to septation site and mother side of bud neck; C. albicans septins appear not to be Smt3p-modified, in contrast to S. cerevisiae septins; similar to S. cerevisiae Smt3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2487975	2489846	+	orf19.669	2487975	2489846	1	2487975	2489846	2487975	2489846	PRM1	orf19.8286|IPF26621.1|IPF20157.1|Contig4-2322_0003|Contig4-2322_0006|orf6.6562|CA4104|CaO19.8286|CaO19.669|IPF20157	Protein induced during the mating process [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2489799	2491516	-	orf19.668	2489799	2491516	1	2491516	2489799	2491386	2489908		orf19.8285|IPF26628.1|IPF3980.2|Contig4-2322_0007|orf6.6561|CA4103|CaO19.8285|CaO19.668|IPF3980	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2491983	2493102	+	orf19.667.1	2491983	2493102	2	2491983|2492497	2492144|2493102	2492138	2492762	RPL37B	IPF26651.1|IPF20156.1|Contig4-2094_0006|CA4102	Predicted ribosomal protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2492937	2495282	-	orf19.666	2492937	2495282	1	2495282	2492937	2495200	2493020		orf19.8283|orf19.8284|IPF26629.1|IPF26636.1|IPF3984.2|IPF3985.2|Contig4-2094_0003|Contig4-2094_0005|Contig4-2322_0011|orf6.6559|orf6.6560|CA4100|CA4101|orf19.667|IPF3985	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2495660	2496856	+	orf19.665	2495660	2496856	1	2495660	2496856	2495756	2496559	NEP1	orf19.8282|IPF26637.1|IPF3986.2|Contig4-2094_0002|orf6.6558|CA4099|CaO19.665|CaO19.8282|IPF3986	Protein of unknown function; ortholog of S. cerevisiae Emg1p, which is involved in ribosome biogenesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2497091	2497825	+	orf19.664	2497091	2497825	1	2497091	2497825	2497091	2497825		orf19.8281|IPF26638.1|IPF3988.2|orf6.6557|CA4098|CaO19.664|CaO19.8281|IPF3988	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2497745	2502256	-	orf19.663	2497745	2502256	1	2502256	2497745	2501997	2497948	GIN4	orf19.8280|IPF26652.1|IPF3994.2|Contig4-2788_0002|orf6.6556|CA4097|CaO19.8280|CaO19.663	Kinase involved in pseudohyphal-to-hyphal switch; phosphorylates Cdc11p on S395 (regulatory); autophosphorylates; necessary for septin ring within germ tube, but not for septin band at mother cell junction; role in cytokinesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2503392	2504080	-	orf19.8278	2503392	2504080	1	2504080	2503392	2503966	2503625			Predicted ORF from original SGTC Assembly 19 annotation, removed from the reduced ORF set by the SGTC; subsequently reinstated in Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2504139	2505389	+	orf19.661	2504139	2505389	1	2504139	2505389	2504197	2505273	KRR1	orf19.8277|IPF3997.3|IPF4000.2|Contig4-2788_0008|orf6.254|orf6.6554|CA4096|CaO19.661	Decreased transcription is observed upon benomyl treatment or in an azole-resistant strain that overexpresses MDR1; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2504855	2505089	-	ntar_236	2504855	2505089	1	2505089	2504855					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2506043	2508324	+	orf19.660	2506043	2508324	1	2506043	2508324	2506221	2508167		orf19.8276|IPF26622.1|IPF4002.2|Contig4-2788_0013|orf6.6553|CA4095|CaO19.660|CaO19.8276|IPF4002	Putative protein of unknown function; mRNA binds to She3p; predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2508147	2512007	-	orf19.658	2508147	2512007	1	2512007	2508147	2511975	2508271	GIN1	orf19.8274|IPF4004|IPF16455.3|IPF4004.2|Contig4-2788_0014|orf6.2188|orf6.6551|CA4094|MRC1|CaO19.658	Protein involved in regulation of DNA-damage-induced filamentous growth; putative component of DNA replication checkpoint; ortholog of S. cerevisiae Mrc1p, an S-phase checkpoint protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2512457	2513100	+	ntar_237	2512457	2513100	1	2512457	2513100	2512457	2512669			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2513493	2514836	-	orf19.657	2513493	2514836	1	2514836	2513493	2514777	2513620	SAM2	orf19.8272|IPF26631.1|IPF15535.2|Contig4-2279_0002|orf6.2190|CA0959|CaO19.657|CaO19.8272	S-adenosylmethionine synthetase, localizes to surface of hyphal cells, but not yeast-form cells; possible biofilm-induced expression (reports differ); alkaline upregulated; Hog1p-induced; farnesol-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2515542	2515876	+	ntar_238	2515542	2515876	1	2515542	2515876					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2515681	2516424	-	ntar_239	2515681	2516424	1	2516424	2515681					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2516626	2517051	-	ntar_240	2516626	2517051	1	2517051	2516626	2516799	2516650			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2516642	2517066	+	ntar_241	2516642	2517066	1	2516642	2517066					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2517333	2518437	-	orf19.656	2517333	2518437	1	2518437	2517333	2518372	2517560	DPP1	orf19.8271|IPF5432.1|IPF29743.1|Contig4-2315_0005|orf6.2191|CA0960|CaO19.656|CaO19.8271	Putative diacylglycerol pyrophosphate phosphatase of diacylglycerol production for phospholipid biosynthesis; downregulation correlates with clinical development of fluconazole resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2522169	2524775	+	orf19.655	2522169	2524775	1	2522169	2524775	2522395	2524032	PHO84	orf19.8269|orf19.8765|IPF26171.1|IPF7638.2|IPF26640.1|IPF5438.2|orf6.447|orf6.3437|CA1782|CA0083|orf19.1172|PHO84.5eoc	Protein similar to high-affinity phosphate transporters; expression is regulated upon white-opaque switching or biofilm formation; Hog1p, ciclopirox olamine or alkaline induced; caspofungin or stress repressed; upregulated in RHE model [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2524768	2527061	-	orf19.1171	2524768	2527061	1	2527061	2524768	2527061	2524803		orf19.8764|IPF26156.1|IPF7635.2|Contig4-2602_0002|orf6.3438|CA1783|CaO19.8764|CaO19.1171|IPF7635	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2528029	2529405	-	orf19.1170	2528029	2529405	1	2529405	2528029	2529344	2528538	ARO7	orf19.8763|IPF26168.1|IPF7632.1|Contig4-2602_0006|orf6.3439|CA1784|CaO19.1170|CaO19.8763	Putative chorismate mutase; fungal-specific (no human or murine homolog); alkaline upregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2528418	2528551	+	ntar_242	2528418	2528551	1	2528418	2528551					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2528820	2529507	+	ntar_243	2528820	2529507	1	2528820	2529507	2529301	2529507			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2529543	2530650	-	orf19.1169	2529543	2530650	1	2530650	2529543	2530577	2529627		orf19.8762|IPF26167.1|IPF7631.2|Contig4-2602_0008|orf6.3440|CA1785|JID1|CaO19.1169|CaO19.8762|IPF7631	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2531124	2531986	-	orf19.1168	2531124	2531986	1	2531986	2531124	2531948	2531361		ZCF3|orf19.8761|IPF7629.2|Contig4-2602_0009|orf6.3441|CA1786|CaO19.1168|CaO19.8761|IPF7629	Predicted zinc-finger protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2532458	2533618	-	orf19.1167	2532458	2533618	1	2533618	2532458	2533618	2532458		orf19.8760|IPF26164.1|IPF19929.1|Contig4-2394_0007|Contig4-2602_0012|orf6.3442|CA1787|TCD1|CaO19.8760|CaO19.1167|IFH3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr1	2534005	2538303	-	orf19.1166	2534005	2538303	2	2538303|2538083	2538186|2534005	2538201	2534209	CTA3	orf19.8759|IPF26181.1|IPF7623.2|Contig4-2394_0005|Contig4-2394_0006|orf6.3443|CA1788|EDE1|USO1.3	Protein similar to S. cerevisiae Ede1p, which is involved in endocytosis; activates transcription in 1-hybrid assay in S. cerevisiae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2538569	2539292	+	orf19.1164	2538569	2539292	1	2538569	2539292	2538599	2539159	GAR1	orf19.8757|IPF13076.1|IPF7621.1|Contig4-2109_0005|Contig4-2394_0002|orf6.1613|orf6.3445|CA1789|CaO19.1164	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to tubercidin (7-deazaadenosine); macrophage/pseudohyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2539097	2540514	-	orf19.1163	2539097	2540514	1	2540514	2539097	2540436	2539345		orf19.8756|IPF13079.1|IPF7620.2|Contig4-2109_0003|orf6.1612|orf6.3446|CA0590|CaO19.8756|CaO19.1163|IPF13079	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2540598	2541226	+	orf19.1162.1	2540598	2541226	2	2540598|2540709	2540628|2541226	2540598	2541211		IPF26174.1|IPF13080.1|Contig4-2109_0002|CA0589|IPF13080	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=Z scenario_last_exon=F]
Ca21chr1	2541360	2541910	+	orf19.1162	2541360	2541910	1	2541360	2541910	2541437	2541814		orf19.8755|IPF18931.2|IPF13081.2|Contig4-2109_0001|orf6.1611|CA0588|CaO19.8755|DOP99|CaO19.1162|IPF13081	Predicted ORF in Assemblies 19, 20 and 21; increased transcription is observed upon benomyl treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2542103	2547491	+	orf19.1161	2542103	2547491	1	2542103	2547491	2542332	2547464	PLD1	orf19.8753|IPF13085.3|IPF29560.1|orf6.1610|orf6.3136|CA0587|SPO14|CaO19.1161|CA1571|SPO14.3eoc|IPF7619.1|SPO14.5eoc|IPF13085.2	Phospholipase D1; required for phosphatidic acid and for most diacylglycerol production; required for wild-type mouse virulence, but not rat oral virulence; mutant defect in hyphal growth on solid substrates; similar to S. cerevisiae Spo14p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2547693	2548421	+	orf19.1160	2547693	2548421	1	2547693	2548421	2547774	2548421		orf19.8752|IPF26172.1|IPF7617.2|Contig4-2834_0013|orf6.3135|CA1570|CaO19.1160|CaO19.8752|IPF7617	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2548377	2550074	-	orf19.1159	2548377	2550074	1	2550074	2548377	2549999	2548479		orf19.8751|IPF26162.1|IPF7616.2|Contig4-2834_0012|orf6.3134|CA1569|CYS1|CaO19.8751|CaO19.1159|IPF7616	Predicted ORF in Assemblies 19, 20 and 21; similar to A. nidulans CYSA serine O-trans-acetylase, suggesting that C. albicans uses an O-acetyl-serine (OAS) pathway of sulfur assimilation; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2550177	2551152	+	orf19.1158	2550177	2551152	1	2550177	2551152	2550177	2551070		orf19.8750|IPF26169.1|IPF7615.1|Contig4-2834_0010|orf6.3133|CA1568|CaO19.1158|CaO19.8750|IPF7615	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2551129	2552283	-	orf19.1156	2551129	2552283	1	2552283	2551129	2552283	2551129	FUS1	orf19.8748|orf6.3131|IPF26166.1|IPF7613.1|Contig4-2834_0008|CA1567|CaO19.1156|CaO19.8748|IPF7613	Probable ortholog of S. cerevisiae Fus1p, which is a membrane protein required for mating; transcription is activated by Cph1p in mating type a cells, homozygous for the MTLa locus; alpha factor induced [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2552345	2553720	-	orf19.1155	2552345	2553720	1	2553720	2552345	2553583	2552729	DPP2	orf19.8747|IPF26170.1|IPF7611.1|Contig4-2834_0007|orf6.3130|CA1566|CaO19.8747|DPP1|CaO19.1155	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae pyrophosphate phosphatase Lpp1p; possible role in farnesol biosynthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2554248	2555163	+	orf19.1154	2554248	2555163	1	2554248	2555163	2554317	2554790	EGD1	orf19.8746|IPF26175.1|IPF7610.1|Contig4-2834_0004|orf6.3129|CA1565|CaO19.8746|CaO19.1154	Predicted ORF in Assemblies 19, 20 and 21; soluble protein in hyphae; biofilm induced; macrophage/pseudohyphal-induced; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2555756	2557685	+	orf19.1153	2555756	2557685	1	2555756	2557685	2555881	2557587	GAD1	orf19.8745|IPF11712.3|IPF7609.1|Contig4-2834_0001|orf6.2779|orf6.3128|CA1564|CaO19.1153	Protein described as glutamate decarboxylase; macrophage-downregulated gene; alkaline downregulated; amphotericin B induced; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2558242	2559413	+	orf19.1152	2558242	2559413	1	2558242	2559413	2558395	2559192		orf19.8744|IPF11713.1|IPF29561.1|IPF19733.2|Contig4-2773_0002|orf6.2780|orf6.3127|CA1330|CA6184|orf19.1151|CaO19.1152|IPF11713.5f	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p; induced in core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2558369	2559521	-	orf19.1150.1	2558369	2559521	1	2559521	2558369	2559483	2559262		IPF26154.1|IPF11714.1|CA1331|IPF11714	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2560894	2562678	+	orf19.1150	2560894	2562678	1	2560894	2562678	2561059	2562477		orf19.8743|IPF26163.1|IPF11716.1|Contig4-2773_0006|orf6.2781|CA1332|CaO19.8743|CaO19.1150|IPF11716	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2562589	2564032	-	orf19.1149	2562589	2564032	1	2564032	2562589	2563794	2562715	MRF1	orf19.8742|IPF11717.2|IPF14722.3|Contig4-2773_0007|orf6.100|orf6.2782|CA1333|ETR2|CaO19.1149	Protein similar to mitochondrial respiratory proteins; increased transcription observed upon benomyl treatment; induced by farnesol, nitric oxide, core stress response; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2564273	2564614	+	ntar_244	2564273	2564614	1	2564273	2564614					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2564787	2565578	-	orf19.1148	2564787	2565578	1	2565578	2564787	2565578	2564787		orf19.8740|IPF19912.1|IPF29559.1|Contig4-2773_0009|orf6.2784|CA1334|CaO19.1148|CIS312|IPF19912	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2567851	2568611	+	orf19.1146	2567851	2568611	1	2567851	2568611	2568243	2568611		IPF29564.1|CaO19.1146	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2568844	2572474	+	orf19.1144	2568844	2572474	1	2568844	2572474	2568844	2572209		orf19.8737|IPF26180.1|IPF13166.3|Contig4-2773_0012|orf6.2172|orf6.2787|CA0953|CaO19.1144|IPF13166|IPF13166.3eoc|IPF13166.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2572602	2573989	+	orf19.1143	2572602	2573989	1	2572602	2573989	2572640	2573824		orf19.8736|IPF26165.1|IPF20069.1|orf6.2173|CA6246|CaO19.8736|CaO19.1143|IPF20069	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2574573	2576930	+	orf19.1142	2574573	2576930	1	2574573	2576930	2574824	2576743		orf19.8735|IPF26160.1|IPF13162.2|Contig4-2171_0004|Contig4-2171_0005|orf6.2174|CA0954|AVT41|CaO19.1142|CaO19.8735|IPF13162	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2576808	2577712	-	orf19.1140	2576808	2577712	1	2577712	2576808	2577590	2576964		orf19.8733|IPF17749.2|IPF13160.2|Contig4-2171_0003|orf6.2176|CA0955|CaO19.1140|IPF13160	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2577946	2581182	-	orf19.1139	2577946	2581182	1	2581182	2577946	2581086	2578162		orf19.8732|IPF17015.2|IPF29554.1|Contig4-2171_0008|orf6.1575|orf6.2177|CA0570|SVL3|CaO19.1139	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2583723	2585113	+	orf19.1137	2583723	2585113	1	2583723	2585113	2584210	2584884		orf19.8730|IPF16571.2|IPF4687.1|Contig4-2562_0007|orf6.1573|orf6.783|CA0569|CDC8|CaO19.1137	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2584766	2585472	-	orf19.1136	2584766	2585472	1	2585472	2584766	2585384	2584947		orf19.8729|IPF16570.2|IPF4688.1|Contig4-2562_0006|orf6.1572|orf6.782|CA0568|APS2|CaO19.1136	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2585539	2588187	+	orf19.1135	2585539	2588187	1	2585539	2588187	2585659	2588094	CAS1	orf19.8728|IPF19699.2|IPF20050.1|IPF20065.1|Contig4-2562_0005|orf6.1571|orf6.1909|orf6.781|CA0779|orf19.3491|YKU701|CaO19.1135	Putative transcription factor with beta-barrel DNA-binding motif; mutation causes marginal increase in caspofungin sensitivity [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2588713	2588821	+	ty(gua)1	2588713	2588821	2	2588713|2588786	2588749|2588821				tY(GUA)1.2	tRNA-Tyr predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2589199	2589292	+	ty(gua)4	2589199	2589292	2	2589199|2589257	2589235|2589292					tRNA-Tyr predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2592232	2594878	+	orf19.5282	2592232	2594878	2	2592232|2593343	2592391|2594878	2593345	2594787		orf19.12747|IPF4696|IPF21944.1|IPF4696.2|Contig4-3082_0045|orf6.7660|CA4970|CaO19.12747|CaO19.5282	Putative protein of unknown function; mRNA binds to She3p; decreased expression in hyphae compared to yeast-form cells; regulated by Efg1p and Efh1p; intron in 5'-UTR; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2595123	2599128	+	orf19.5281	2595123	2599128	1	2595123	2599128	2595379	2599041		orf19.12746|IPF21985.1|IPF4697.2|Contig4-3082_0043|orf6.7661|CA4971|CaO19.5281|SCP160|CaO19.12746|IPF4697	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2600193	2602071	+	orf19.5280	2600193	2602071	1	2600193	2602071	2600273	2601934	MUP1	orf19.12745|IPF21939.1|IPF4701.2|Contig4-3082_0038|orf6.7662|CA4972|CaO19.5280|CaO19.12745	Alkaline upregulated by Rim101p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2602212	2602937	+	orf19.5279	2602212	2602937	1	2602212	2602937	2602277	2602699		orf19.12744|IPF21976.1|IPF4703.2|Contig4-3082_0036|orf6.7663|CA4973|CaO19.5279|MRPL51|CaO19.12744|IPF4703	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2603064	2604362	+	orf19.5278	2603064	2604362	1	2603064	2604362	2603198	2604226		orf19.12743|IPF21955.1|IPF4704.1|Contig4-3082_0035|orf6.7664|CA4974|CaO19.5278|CMD2|CaO19.12743|IPF4704	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2604326	2605649	-	orf19.5277	2604326	2605649	1	2605649	2604326	2605624	2604401		orf19.12742|IPF21953.1|IPF4706.1|Contig4-3082_0034|orf6.7665|CA4975|CaO19.12742|CaO19.5277|IPF4706	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2605840	2607204	+	orf19.5276	2605840	2607204	1	2605840	2607204	2605879	2607126		orf19.12741|IPF21952.1|IPF4708.1|Contig4-3082_0031|orf6.7666|CA4976|CaO19.5276|THP1|CaO19.12741|IPF4708	Predicted ORF in Assemblies 19, 20 and 21; induced upon low-level peroxide stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2607376	2608829	+	orf19.5275	2607376	2608829	1	2607376	2608829	2607454	2608677		orf19.12740|IPF21950.1|IPF4710.1|Contig4-3082_0030|orf6.7667|CA4977|CaO19.5275|CaO19.12740|IPF4710	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2608786	2609209	-	ntar_245	2608786	2609209	1	2609209	2608786					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2610641	2613990	+	orf19.5274	2610641	2613990	1	2610641	2613990	2610835	2613900		orf19.12739|IPF21996.1|IPF2065.2|Contig4-3082_0028|orf6.7668|CA4978|CaO19.12739|CAF120|CaO19.5274|IPF2065	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2614012	2615942	-	orf19.5271	2614012	2615942	1	2615942	2614012	2615882	2614137		orf19.12736|IPF21938.1|IPF2062.1|Contig4-3082_0026|orf6.7671|CA4979|CaO19.12736|CaO19.5271|IPF2062	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2616938	2618200	+	orf19.5270	2616938	2618200	1	2616938	2618200	2617074	2618096		orf19.12735|IPF21957.1|IPF2059.1|Contig4-3082_0023|orf6.7672|CA4980|CaO19.12735|CMD3|CaO19.5270|IPF2059	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2618103	2618790	-	orf19.5269.1	2618103	2618790	1	2618790	2618103	2618557	2618303			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2619114	2620782	-	orf19.5269	2619114	2620782	1	2620782	2619114	2620566	2619175		orf19.12734|IPF21945.1|IPF2057.1|Contig4-3082_0018|orf6.7673|CA4981|CaO19.12734|CaO19.5269|IPF2057	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2620859	2622002	+	orf19.5268	2620859	2622002	1	2620859	2622002	2621014	2621526		orf19.12733|IPF21969.1|IPF2054.1|Contig4-3082_0015|orf6.7674|CA4982|CaO19.5268|NUT2|CaO19.12733	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2620917	2621690	-	ntar_246	2620917	2621690	1	2621690	2620917					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2623953	2624906	+	orf19.5267	2623953	2624906	1	2623953	2624906	2624074	2624559		orf19.12732|IPF21970.1|IPF2053.1|Contig4-3082_0012|orf6.7675|CA4983|CaO19.12732|CaO19.5267|IPF2053	Putative cell wall protein; downregulated in core caspofungin response; transcription is repressed in response to alpha pheromone in SpiderM medium; transcription repressed in ace2 null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2624769	2626184	-	orf19.5266	2624769	2626184	1	2626184	2624769	2626184	2624805		orf19.12731|IPF21948.1|IPF2052.1|Contig4-3082_0011|orf6.7676|CA4984|CaO19.5266|CaO19.12731|IPF2052	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	2626424	2629582	-	orf19.5265	2626424	2629582	1	2629582	2626424	2629381	2626667	KIP4	orf19.12730|KINH|IPF21924.1|IPF2050.1|Contig4-3082_0007|Contig4-3082_0008|orf6.7677|CA4985|CaO19.5265|SMY1|CaO19.12730|IPF2050	Transposon mutation affects filamentous growth; filament induced; shows Mob2p-dependent hyphal regulation; regulated by Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2631799	2631997	-	ntar_247	2631799	2631997	1	2631997	2631799					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2632107	2632532	+	orf19.5264	2632107	2632532	1	2632107	2632532	2632107	2632532		orf19.12729|IPF21979.1|IPF28105.1|orf6.7678|CaO19.12729|CaO19.5264	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2632940	2634504	+	orf19.5263	2632940	2634504	1	2632940	2634504	2633019	2634410	SER33	orf19.12728|IPF21949.1|IPF2046.1|Contig4-2701_0010|Contig4-2701_0011|orf6.7679|CA4986|SER3|CaO19.5263|CaO19.12728	Predicted enzyme of amino acid biosynthesis; Gcn4p-regulated; upregulated in biofilm; protein detected by mass spec in exponential and stationary phase cultures; S. cerevisiae ortholog is Gcn4p regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2634590	2635021	+	orf19.5262	2634590	2635021	1	2634590	2635021	2634590	2635021		orf19.12727|IPF21975.1|IPF2045.1|Contig4-2701_0009|orf6.7680|CA4987|CaO19.5262|CaO19.12727|IPF2045	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2635329	2638386	+	orf19.5260	2635329	2638386	1	2635329	2638386	2635462	2638320	RPN2	orf19.12725|orf19.12726|IPF21923.1|IPF2043.1|Contig4-2701_0006|Contig4-2701_0007|orf6.7682|orf6.7681|CA4988|orf19.5261|CaO19.12725|CaO19.5260	Transcription is regulated by Mig1p; caspofungin repressed; regulated by Gcn2p and Gcn4p; gene used for strain identification by multilocus sequence typing [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2638387	2639220	-	orf19.5259	2638387	2639220	1	2639220	2638387	2639142	2638423		orf19.12724|IPF21962.1|IPF2041.2|Contig4-2701_0005|orf6.7683|CA4989|CaO19.12724|CaO19.5259|IPF2041	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2639259	2641209	-	orf19.5258	2639259	2641209	1	2641209	2639259	2641174	2639294		orf19.12723|IPF21937.1|IPF2039.1|Contig4-2701_0004|orf6.7684|CA4990|CaO19.12723|CaO19.5258|IPF2039	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2641926	2643683	+	orf19.5257	2641926	2643683	1	2641926	2643683	2641966	2643558	LCB4	orf19.12722|IPF21943.1|IPF2037.1|Contig4-2701_0001|orf6.7685|CA4991|CaO19.12722|CaO19.5257	Putative sphingosine kinase; expression is Tac1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2643690	2645045	-	orf19.5256	2643690	2645045	1	2645045	2643690	2645045	2643690		orf19.12721|IPF21947.1|IPF2036.1|orf6.7686|CA4992|CaO19.5256|CaO19.12721|IPF2036	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2645293	2647565	-	orf19.5255	2645293	2647565	1	2647565	2645293	2647477	2645474	PXA2	orf19.12720|IPF21930.1|IPF2034.2|Contig4-3107_0029|orf6.7687|CA4993|CaO19.12720|CaO19.5255	Putative peroxisomal, half-size adrenoleukodystrophy protein (ALD or ALDp) subfamily ABC transporter; Gcn4p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2647676	2648338	-	orf19.5254	2647676	2648338	1	2648338	2647676	2648269	2647889		orf19.12719|IPF21981.1|IPF2033.1|Contig4-3067_0001|orf6.7688|CA4994|CaO19.5254|CaO19.12719|IPF2033	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2648515	2650991	+	orf19.5253	2648515	2650991	1	2648515	2650991	2648700	2650898		orf19.12718|IPF21932.1|IPF2032.1|Contig4-3067_0003|orf6.7689|CA4995|CaO19.5253|CaO19.12718|IPF2032|YAK1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2650767	2653408	-	orf19.5251	2650767	2653408	1	2653408	2650767	2653379	2650980		ZCF30|orf19.12716|IPF2029|IPF21928.1|IPF2029.1|Contig4-3067_0004|Contig4-3067_0005|orf6.7691|CA4996|CaO19.5251|CaO19.12716	Predicted zinc-finger protein of unknown function; not essential for viability; decreased transcription is observed upon fluphenazine treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2653663	2654340	+	orf19.5250	2653663	2654340	1	2653663	2654340	2653711	2654199		orf19.12715|IPF21972.1|IPF2027.1|Contig4-3067_0008|orf6.7692|CA4997|CaO19.5250|CaO19.12715|IPF2027	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2654160	2655072	-	orf19.5249	2654160	2655072	2	2655072|2654828	2654898|2654160	2654955	2654278		orf19.12714|IPF21966.1|IPF2026.1|Contig4-3067_0009|orf6.7693|CA4998|CaO19.12714|CaO19.5249|IPF2026	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2655428	2656385	+	orf19.5248	2655428	2656385	1	2655428	2656385	2655623	2656132	MSO1	orf19.12713|IPF21968.1|IPF2024.1|Contig4-3067_0011|orf6.7694|CA4999|CaO19.5248|CaO19.12713|IPF2024	Predicted ORF in Assemblies 19, 20 and 21; expression is down-regulated during pseudohyphal growth in the presence of lysed macrophages [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2656132	2657545	-	orf19.5247	2656132	2657545	1	2657545	2656132	2657486	2656206		orf19.12712|IPF21951.1|IPF2023.2|Contig4-3067_0012|Contig4-3067_0013|orf6.7695|CA5000|CaO19.5247|CaO19.12712|IPF2023	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2657639	2658949	-	orf19.5246	2657639	2658949	1	2658949	2657639	2658916	2657750		orf19.12711|IPF21954.1|IPF2022.1|Contig4-3067_0014|orf6.7696|CA5001|CaO19.5246|CaO19.12711|IPF2022	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2659343	2661558	+	orf19.5245	2659343	2661558	1	2659343	2661558	2659343	2661511		orf19.12710|IPF21933.1|IPF2021.1|Contig4-3067_0016|Contig4-3067_0017|orf6.7697|CA5002|CaO19.12710|BUL4|CaO19.5245|IPF2021	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2661727	2664794	+	orf19.5244	2661727	2664794	1	2661727	2664794	2661825	2664740	MCD4	orf19.12709|IPF21997.1|IPF2019.2|Contig4-3067_0018|orf6.7698|CA5003|CaO19.5244|CaO19.12709	Protein of major facilitator superfamily; has phosphodiesterase/nucleotide pyrophosphatase domain; similar to S. cerevisiae Mcd4p, which acts in GPI anchor biosynthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2664927	2666594	+	orf19.5243	2664927	2666594	1	2664927	2666594	2664966	2666528	TRP3	orf19.12708|IPF21941.1|IPF2018.2|Contig4-3067_0019|orf6.7699|CA5004|CaO19.12708|CaO19.5243	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2666984	2668695	+	orf19.5242	2666984	2668695	1	2666984	2668695	2667057	2668502	CDC6	orf19.12707|IPF2017.3|IPF28100.1|Contig4-3067_0020|orf6.769|orf6.7700|CA6297|CDC62.3f|CA0178|IPF2017.2	Predicted ORF in Assemblies 19, 20 and 21; member of conserved Mcm1p regulon; periodic mRNA expression, peak at cell-cycle M/G1 phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2668545	2668899	-	ntar_248	2668545	2668899	1	2668899	2668545					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2669334	2672788	+	orf19.5241	2669334	2672788	1	2669334	2672788	2669672	2672677	SNT1	orf19.12706|IPF12584|IPF2015.3|IPF12584.2|Contig4-3067_0022|orf6.768|orf6.7701|CA5006|CaO19.5241	Protein similar to S. cerevisiae Snt1p, which is an NAD-independent histone deacetylase; not essential for viability; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2672782	2674324	-	orf19.5239	2672782	2674324	1	2674324	2672782	2674291	2672876		orf19.12703|IPF21946.1|IPF12579.2|Contig4-3067_0023|orf6.7703|CA5007|CaO19.5239|CaO19.12703|IPF12579	Predicted ORF in Assemblies 19, 20 and 21; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2674426	2676564	-	orf19.5238	2674426	2676564	1	2676564	2674426	2676383	2674566		orf19.12702|IPF21935.1|IPF12577.2|Contig4-3067_0025|orf6.7704|CA5008|CaO19.5238|CaO19.12702|IPF12577	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2677459	2678228	+	orf19.5237	2677459	2678228	1	2677459	2678228	2677581	2678222		orf19.12701|IPF21964.1|IPF13946.2|Contig4-3067_0029|orf6.7705|CA5009|VPH2|CaO19.12701|CaO19.5237	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2678359	2679446	+	orf19.5236	2678359	2679446	2	2678359|2678682	2678616|2679446	2678377	2679386		orf19.12700|IPF21963.1|IPF13944.2|IPF21921.1|IPF13945.2|Contig4-3067_0030|Contig4-3067_0031|orf6.7706|CA5011|CA5010|orf19.5236.1|CaO19.5236|SRT1|CaO19.12700|IPF13944	Predicted ORF in Assemblies 19, 20 and 21; merged with orf19.5236.1 in Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2679228	2680284	-	orf19.5235	2679228	2680284	1	2680284	2679228	2680237	2679539		orf19.12699|IPF13943|IPF21961.1|IPF13943.2|Contig4-3067_0032|orf6.7707|CA5012|CaO19.12699|CaO19.5235	Protein not essential for viability; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2680428	2682928	-	orf19.5234	2680428	2682928	1	2682928	2680428	2682643	2680634	RBD1	orf19.12698|IPF11263.3|IPF13941.2|Contig4-3067_0034|orf6.2435|orf6.7708|CA5013|CaO19.5234|IPF13941	Rhomboid-like protein; similar to putative intramembrane serine proteases; involved in filamentous growth; Gcn4p-regulated; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2683788	2684135	+	orf19.5233	2683788	2684135	1	2683788	2684135	2683788	2684135		IPF21990.1|IPF28106.1|orf6.7709|CaO19.5233	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2685604	2686751	-	orf19.5232	2685604	2686751	1	2686751	2685604	2686695	2685817	CSI2	orf19.12697|IPF11270.2|IPF28101.1|Contig4-2357_0002|orf6.2436|orf6.7710|CA1106|CaO19.5232|BRX1|IPF11270	Protein essential for growth; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2687159	2687688	-	orf19.5231.2	2687159	2687688	1	2687688	2687159	2687617	2687414		IPF11271.2|IPF28096.1|CA1107|IPF11271	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2687973	2689208	+	orf19.5231	2687973	2689208	1	2687973	2689208	2687973	2689208		orf19.12696|IPF11273.2|IPF18148.2|Contig4-2357_0007|orf6.2437|orf6.7711|CA1108|CaO19.5231|IPF11273	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2689281	2690459	-	orf19.5230	2689281	2690459	1	2690459	2689281	2690384	2689374	MRPS9	orf19.12695|IPF21956.1|IPF11274.2|Contig4-2357_0008|orf6.2438|CA1109|CaO19.12695|CaO19.5230	Mitochondrial ribosomal protein S9; has N-terminal mitochondrial targeting signal and an S9 consensus motif; overexpression in S. cerevisiae causes respiratory defect that is reversible upon cessation of C. albicans gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2690852	2693991	+	orf19.5229	2690852	2693991	1	2690852	2693991	2690877	2693891		orf19.12694|IPF21994.1|IPF10406.2|Contig4-1973_0007|Contig4-2357_0011|orf6.2439|CA1110|CaO19.12694|DIS3|CaO19.5229	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2693909	2695002	-	orf19.5228	2693909	2695002	1	2695002	2693909	2694636	2694013	RIB3	orf19.12693|orf6.2440|IPF10407.2|IPF18577.2|Contig4-1973_0005|orf6.3689|CA1111|CaO19.5228|RIB3.5f	3,4-Dihydroxy-2-butanone 4-phosphate synthase; homodimeric enzyme of riboflavin biosynthesis; converts ribulose 5-phosphate to L-3,4-dihydroxy-2-butanone 4-phosphate; transcription regulated on yeast-hyphal switch, macrophage interaction [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2695794	2696661	+	orf19.5227	2695794	2696661	1	2695794	2696661	2695968	2696465		orf19.12692|IPF18759.2|IPF10410.1|Contig4-1973_0002|orf6.2441|orf6.3688|CA1974|CaO19.5227|IPF10410	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2696438	2697992	-	orf19.5226	2696438	2697992	1	2697992	2696438	2697872	2696598	WRS1	orf19.12691|IPF18578.2|IPF10411.2|Contig4-2921_0012|orf6.3687|CA1973|CaO19.5226|CaO19.12691	Putative tRNA-Trp synthetase; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2698087	2699362	-	orf19.5225.2	2698087	2699362	2	2699362|2698734	2699151|2698087	2699181	2698355	RPL27A	IPF19343.2|IPF10412.2|CA1972	Predicted ribosomal protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2699638	2700109	-	orf19.5225	2699638	2700109	1	2700109	2699638	2700109	2699732		IPF10414.1|Contig4-2423_0001|orf6.3686|CaO19.5225	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2700359	2703193	-	orf19.5224	2700359	2703193	1	2703193	2700359	2703193	2700359		orf19.12690|IPF17210.3|IPF10418.1|Contig4-2423_0002|orf6.320|orf6.3685|CA1971|CaO19.5224|PKH1|PKH2	Putative protein of unknown function; mRNA binds to She3p and is localized to hyphal tips; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2703358	2703785	-	orf19.5223	2703358	2703785	1	2703785	2703358	2703785	2703387		IPF10862.3|IPF28108.1|Contig4-2423_0005|orf6.3684|CaO19.5223	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2704457	2707759	+	orf19.5221	2704457	2707759	1	2704457	2707759	2704703	2707654		orf19.12688|IPF19391.2|IPF10863.2|orf6.3682|orf6.210|orf6.3683|CA1969|CA1970|orf19.5222|IPF18579.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2707878	2708966	+	orf19.5220	2707878	2708966	1	2707878	2708966	2707934	2708791		orf19.12687|IPF21958.1|IPF10864.2|Contig4-2993_0009|orf6.3681|CA1968|CaO19.5220|REX4|CaO19.12687|IPF10864	Predicted ORF in Assemblies 19, 20 and 21; increased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2708829	2717400	-	orf19.5219	2708829	2717400	1	2717400	2708829	2717074	2709143	IRA2	orf19.12686|IPF21959.1|IPF10866.2|orf6.3680|CA1967|CaO19.5219|IPF10866	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2718527	2718879	+	ntar_249	2718527	2718879	1	2718527	2718879					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2718529	2719038	-	orf19.69.2	2718529	2719038	1	2719038	2718529	2719038	2718745		IPF27195.1|IPF29971.1|Contig4-1654_0004|orf6.6543	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2718980	2719122	+	ntar_250	2718980	2719122	1	2718980	2719122					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2720131	2720868	+	orf19.69	2720131	2720868	1	2720131	2720868	2720131	2720868		orf19.7723|IPF27193.1|IPF17131.2|orf6.1692|CA0644|CaO19.69|CaO19.7723|IPF17131	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction); transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr1	2720924	2722156	+	orf19.68.2	2720924	2722156	2	2720924|2721196	2721109|2722156	2721027	2721529		IPF27197.1|IPF17130.1	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2721491	2721979	-	ntar_251	2721491	2721979	1	2721979	2721491	2721694	2721533			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2722253	2727512	+	orf19.3767	2722253	2727512	1	2722253	2727512	2722961	2727364		orf19.11251|PEP1|IPF23513.1|IPF15204.2|Contig4-3056_0041|orf6.3952|CA2171|CaO19.11251|CaO19.3767|PEP1.3eoc|PEP1.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2727637	2727733	-	tw(cca)1	2727637	2727733	2	2727733|2727672	2727697|2727637				tW(CCA)1.2	tRNA-Trp predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2729233	2733831	+	orf19.3765	2729233	2733831	1	2729233	2733831	2729519	2733700	RAX2	orf19.11249|IPF23515.1|IPF15377.2|Contig4-2657_0017|orf6.3954|CA2172|CaO19.3765|CaO19.11249|IPF15377	Protein of unknown function; detected at yeast-form cell plasma membrane by mass spectrometry; transcription is filament induced and negatively regulated by Rim101p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2734093	2736593	+	orf19.3764	2734093	2736593	1	2734093	2736593	2734270	2736549	GSG1	orf19.11248|IPF23501.1|IPF18527.1|orf6.3955|CA2173|CaO19.11248|CaO19.3764|IPF18527	Protein not essential for viability; similar to S. cerevisiae Gsg1p, which is a subunit of the TRAPP complex involved in targeting of ER-to-Golgi transport vesicles [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2736465	2738138	-	orf19.3763	2736465	2738138	1	2738138	2736465	2738052	2736673		orf19.11247|IPF23505.1|IPF20096.1|Contig4-2804_0018|orf6.3956|CA2174|CaO19.3763|CaO19.11247|IPF20096	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2738325	2739109	+	orf19.3762	2738325	2739109	1	2738325	2739109	2738399	2738935		orf19.11246|IPF23511.1|IPF8892.2|Contig4-2804_0015|orf6.3957|CA2175|CaO19.11246|CaO19.3762|IPF8892	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2738951	2741807	-	orf19.3761	2738951	2741807	1	2741807	2738951	2741772	2739034	CDC54	orf19.11245|IPF8893.2|IPF18798.2|Contig4-2804_0013|orf6.2267|orf6.3958|CA2176|CaO19.3761|MCM4	Transcription is regulated by Nrg1p and Mig1p; periodic mRNA expression, peak at cell-cycle M/G1 phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2742044	2743158	-	orf19.3760	2742044	2743158	3	2743158|2742972|2742817	2743054|2742877|2742044	2743158	2742044	DLH1	orf19.11244|IPF18526.1|IPF23502.1|IPF23509.1|IPF28648.1|IPF8896.2|IPF8895.2|Contig4-2804_0012|orf6.2266|orf6.3959|CA1007|DLH1.3f	[NOT TRANSCRIBED?] Functional homolog of S. cerevisiae Dmc1p, which is a meiosis-specific protein [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2743237	2744704	-	orf19.3759	2743237	2744704	1	2744704	2743237	2744638	2743298		orf19.11243|IPF23508.1|IPF8898.2|Contig4-2804_0009|orf6.2265|CA1005|CaO19.11243|CaO19.3759|LPG7	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2744817	2746692	+	orf19.3758	2744817	2746692	1	2744817	2746692	2745011	2746438		orf19.11242|IPF23507.1|IPF8901.2|Contig4-2804_0004|Contig4-2804_0006|orf6.2264|CA1004|CaO19.11242|CaO19.3758|IPF8901	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2746814	2747600	+	orf19.3757	2746814	2747600	1	2746814	2747600	2746930	2747274	ATP20	orf19.11241|IPF23516.1|IPF8902.2|Contig4-2804_0001|orf6.2263|CA1003|CaO19.3757|CaO19.11241	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p; flucytosine induced; caspofungin repressed; macrophage/pseudohyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2747682	2749675	-	orf19.3756	2747682	2749675	1	2749675	2747682	2749675	2747753	CHR1	orf19.11240|IPF23503.1|IPF8903.2|Contig4-2804_0019|orf6.2262|CA1002|CaO19.3756|CaO19.11240|ROK1.3f|ROK1.3	Predicted DEAD-box ATP-dependent RNA helicase, functional homolog of S. cerevisiae Rok1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2749725	2750806	+	orf19.3755	2749725	2750806	1	2749725	2750806	2749794	2750456		orf19.11239|orf19.13720|IPF23510.1|IPF18800.1|IPF20807.1|IPF11656.2|Contig4-2678_0018|orf6.2261|orf6.5792|CA3515|orf19.6363|CaO19.3755|MRPL152|CaO19.11239	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2752332	2757111	+	orf19.6362	2752332	2757111	1	2752332	2757111	2752581	2756981	SPA2	orf19.13719|orf6.5791|IPF20811.1|IPF11245.2|Contig4-2678_0013|CA3514|CaO19.13719|CaO19.6362|IPF11245	Protein involved in cell polarity, Spitzenkorper formation; required for mouse virulence; localizes to hyphal tip; has cell-cycle regulated localization in yeast-form cells; functional domains conserved with S. cerevisiae Spa2p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2757057	2757917	-	orf19.6360	2757057	2757917	1	2757917	2757057	2757810	2757136		orf19.13717|IPF20805.1|IPF11246.2|Contig4-2678_0010|orf6.5789|CA3513|CWC15|CaO19.6360|CaO19.13717|IPF11246	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2758110	2759050	+	orf19.6359	2758110	2759050	1	2758110	2759050	2758245	2758646		orf19.13716|IPF20812.1|IPF11247.2|Contig4-2678_0008|orf6.5788|CA3512|CaO19.13716|SOM1|CaO19.6359|IPF11247	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2758629	2759567	-	orf19.6358	2758629	2759567	2	2759567|2759196	2759280|2758629	2759290	2758794		orf19.13715|IPF20810.1|IPF11248.2|Contig4-2678_0007|orf6.5787|CA3511|MMS2|CaO19.13715|CaO19.6358	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2759706	2761954	+	orf19.6357	2759706	2761954	1	2759706	2761954	2759755	2761845		orf19.13714|IPF20796.1|IPF11251.2|Contig4-2678_0004|Contig4-2678_0005|orf6.5786|CA3510|MAD1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2761793	2764614	-	orf19.6356	2761793	2764614	1	2764614	2761793	2764614	2761879		orf19.13713|IPF20795.1|IPF19783.1|Contig4-2678_0002|orf6.5785|CA3509|CaO19.6356|PRP6|CaO19.13713	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	2764752	2766517	+	orf19.6355	2764752	2766517	1	2764752	2766517	2764811	2766364		orf19.13712|IPF20800.1|IPF11376.2|Contig4-2117_0001|orf6.5784|CA3508|RRB1|CaO19.6355|CaO19.13712|RSA2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2766313	2767192	-	orf19.6354	2766313	2767192	1	2767192	2766313	2767100	2766450		orf19.13711|IPF20808.1|IPF11375.2|Contig4-2117_0002|orf6.5783|CA3507|CaO19.6354|CaO19.13711|IPF11375	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2767663	2769944	+	orf19.6353	2767663	2769944	1	2767663	2769944	2768204	2769913		orf19.13710|IPF20797.1|IPF11374.2|orf6.5782|CA3506|LPF40|CaO19.6353|CaO19.13710|IFA5	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2770205	2772028	-	orf19.6351	2770205	2772028	1	2772028	2770205	2771901	2770498		orf19.13708|IPF19114.2|IPF11372.2|Contig4-2669_0002|orf6.5780|orf6.880|CA3505|CaO19.6351|IPF11372	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2772540	2772781	+	ntar_252	2772540	2772781	1	2772540	2772781					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2772553	2773095	-	orf19.6350	2772553	2773095	1	2773095	2772553	2773095	2772553		orf19.13707|IPF15889.1|IPF11369.2|Contig4-2300_0002|orf6.5779|orf6.879|CA3504|CaO19.6350|IPF11369	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2774410	2775990	+	orf19.6349	2774410	2775990	1	2774410	2775990	2774814	2775821	RVS162	orf19.13706|IPF19115.1|IPF15890.2|Contig4-2300_0006|orf6.5778|orf6.877|orf6.878|CA3503|RVS99|CaO19.6349|IPF15890	Protein containing a BAR domain, which is found in proteins involved in membrane curvature; null mutant does not display the endocytic, hyphal growth, virulence, or cell wall defects exhibited by mutants in related genes RVS161 and RVS167 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2776637	2779680	+	orf19.6348	2776637	2779680	1	2776637	2779680	2776744	2779569		orf19.13704|IPF14485|IPF19117.2|IPF14485.2|Contig4-2232_0003|Contig4-2232_0005|orf6.5777|orf6.876|CA3502|CaO19.6348	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2779567	2781222	-	orf19.6347	2779567	2781222	1	2781222	2779567	2781210	2779648		orf19.13703|IPF20799.1|IPF14486.2|Contig4-2232_0002|orf6.5776|CA3501|CaO19.6347|CDC40|CaO19.13703	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2781333	2782477	+	orf19.6346	2781333	2782477	1	2781333	2782477	2781378	2782343		orf19.13702|IPF20804.1|IPF14487.2|Contig4-2232_0001|orf6.5775|CA3500|CaO19.6346|IPF14487	Predicted ORF in Assemblies 19, 20 and 21; decreased transcription is observed in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2782520	2785459	+	orf19.6345	2782520	2785459	1	2782520	2785459	2782583	2785375	RPG1A	orf19.13701|IPF20794.1|IPF15252.2|Contig4-2851_0006|orf6.5774|CA3499|RPG1|CaO19.6345	Putative translation initiation factor; mutation confers hypersensitivity to roridin A and verrucarin A; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2785617	2786966	+	orf19.6344	2785617	2786966	1	2785617	2786966	2785714	2786886	RBK1	orf19.13700|IPF20801.1|IPF15253.2|Contig4-2421_0007|orf6.5773|CA3498|CaO19.6344	Protein not essential for viability; similar to S. cerevisiae Rbk1p, which is a ribokinase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2787017	2789003	-	orf19.6343	2787017	2789003	1	2789003	2787017	2788209	2787196		orf19.13699|IPF20802.1|IPF18329.1|orf6.5772|CA3497|FEN1|CaO19.6343|FEN11	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2789460	2790122	+	orf19.6342	2789460	2790122	1	2789460	2790122	2789572	2790057		orf19.13698|IPF20806.1|IPF17064.2|Contig4-1616_0008|orf6.5771|CA3496|CaO19.6342|CaO19.13698|IPF17064	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2790259	2791328	+	orf19.6341	2790259	2791328	1	2790259	2791328	2790349	2791263		orf19.13697|IPF20803.1|IPF17066.2|Contig4-1616_0004|orf6.5770|CA3495|CaO19.13697|RIB7|CaO19.6341	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2791240	2792542	-	orf19.6340	2791240	2792542	2	2792542|2791935	2792240|2791240	2792314	2791366		orf19.13696|IPF20809.1|IPF17067.2|Contig4-1616_0003|orf6.5769|CA3494|RPB5	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2792718	2796608	-	orf19.4913	2792718	2796608	1	2796608	2792718	2796467	2792838		orf19.12379|IPF22322.1|IPF15649.2|orf6.3292|CA1680|CaO19.4913|CaO19.12379|IPF15649	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2793139	2793328	+	ntar_253	2793139	2793328	1	2793139	2793328					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2797746	2798624	+	orf19.4914	2797746	2798624	1	2797746	2798624	2797901	2798254		orf19.12380|IPF22319.1|IPF12676.2|Contig4-2257_0005|orf6.3293|CA1681|CaO19.12380|CaO19.4914|IPF12676	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2799719	2800493	+	orf19.4914.1	2799719	2800493	1	2799719	2800493	2799928	2800161			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2800473	2802440	-	orf19.4916	2800473	2802440	1	2802440	2800473	2802440	2800971		orf19.12382|IPF22260.1|IPF19926.1|Contig4-2257_0013|Contig4-2257_0014|Contig4-2257_0016|orf6.3295|CA6216|YFW2|CaO19.12382|CaO19.4916|IPF12669.3f	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	2802497	2803144	-	orf19.4917	2802497	2803144	1	2803144	2802497	2803144	2802497		orf19.12383|IPF22284.1|IPF12669.2|Contig4-1725_0008|orf6.3296|CA6217|CaO19.4917|CaO19.12383|IPF12669.5f	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr1	2803638	2805337	-	orf19.4918	2803638	2805337	1	2805337	2803638	2805337	2803778		orf19.12384|IPF13890.3|IPF18629.1|Contig4-2364_0002|orf6.3297|orf6.1451|CA1682|TRA98|CaO19.12384|CaO19.4918|Cirt3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2805665	2807341	+	orf19.4919	2805665	2807341	1	2805665	2807341	2805665	2806975		orf19.12385|orf19.12386|IPF19869.2|IPF18628.1|Contig4-1725_0012|orf6.3298|orf6.3299|CA1683|orf19.4920|CaO19.4919|CTN4|CaO19.12385|Cirt5|Cirt	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2807971	2810256	+	orf19.4921	2807971	2810256	1	2807971	2810256	2807971	2810142		orf19.12387|IPF13892.3|IPF6070.2|Contig4-1725_0002|Contig4-1725_0005|orf6.3300|CA1684|CaO19.4921|YFW1|CaO19.12387|IPF6070	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2810223	2810780	-	ntar_254	2810223	2810780	1	2810780	2810223					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2811829	2812406	+	orf19.4921.1	2811829	2812406	1	2811829	2812406	2812003	2812167			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2812379	2813615	-	orf19.4922	2812379	2813615	3	2813615|2813441|2813321	2813532|2813405|2812379	2813567	2812558		orf19.12388|IPF22281.1|IPF6076.2|Contig4-2999_0018|orf6.5902|CA3594|CaO19.4922|CaO19.12388|IPF6076|IPF6076.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2813793	2815349	-	orf19.4923	2813793	2815349	1	2815349	2813793	2815349	2813793		orf19.12389|IPF22248.1|IPF6079.1|Contig4-2999_0016|orf6.5903|CA3595|CaO19.4923|CaO19.12389|IPF6079	Predicted membrane transporter, member of the sugar porter (SP) family, major facilitator superfamily (MFS); caspofungin induced [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr1	2815474	2815686	-	orf19.4923.1	2815474	2815686	1	2815686	2815474	2815686	2815474			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2815851	2819954	+	orf19.4924	2815851	2819954	1	2815851	2819954	2815904	2819872		orf19.12390|IPF22318.1|IPF6085.2|Contig4-2999_0010|Contig4-2999_0011|orf6.5904|CA3596|CaO19.12390|CaO19.4924|IPF6085	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2819840	2825460	-	orf19.4927	2819840	2825460	1	2825460	2819840	2825216	2820018	BNI1	orf19.12393|IPF22291.1|IPF6091.1|Contig4-2999_0009|orf6.5907|CA3597|CaO19.4927|CaO19.12393	Formin; role in cytoskeletal organization, cell polarity; role in systemic virulence in mouse; cell-cycle regulated localization to site of polarized growth, bud neck; localizes to Spitzenkorper of hyphae, minor localization at septum [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2825807	2825971	+	ntar_255	2825807	2825971	1	2825807	2825971					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2827146	2829906	-	orf19.4928	2827146	2829906	1	2829906	2827146	2829597	2827342		orf19.12394|IPF6094.2|IPF28177.1|Contig4-2999_0005|orf6.5908|CA3598|SEC2|CaO19.4928	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2830765	2831724	+	ntar_256	2830765	2831724	1	2830765	2831724	2831135	2831299			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2831923	2835746	+	orf19.4929	2831923	2835746	1	2831923	2835746	2832089	2835613		orf19.12395|IPF22332.1|IPF19785.1|Contig4-2999_0001|Contig4-2999_0002|orf6.5909|CA3599|CaO19.4929|CaO19.12395|IPF19785	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2835623	2836370	-	orf19.4930	2835623	2836370	1	2836370	2835623	2836345	2835767	SPC3	orf19.12396|orf6.5910|IPF22286.1|IPF15621.2|Contig4-2611_0002|CA3600|CaO19.12396|CaO19.4930	Essential protein; similar to S. cerevisiae Spc3p, a component of the signal peptidase complex required for signal peptidase activity; predicted integral ER membrane protein; complements spc3 and suppresses sec61 S. cerevisiae mutants [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2836495	2838978	-	orf19.4931	2836495	2838978	1	2838978	2836495	2838889	2836544		orf19.12397|IPF22211.1|IPF15618.2|Contig4-2611_0003|Contig4-2611_0004|orf6.5911|YNL247WA|CA3601|CaO19.12397|CaO19.4931|IPF15618	Putative tRNA-Cys synthetase; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2839066	2839572	-	ntar_1425	2839066	2839572	2	2839572|2839301	2839505|2839066					 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2839810	2841018	+	orf19.4931.1	2839810	2841018	2	2839810|2840408	2840053|2841018	2839943	2840692	RPL14	IPF22199.1|IPF12937.2|Contig4-2611_0007|CA3602|RPL14B|RPL14B.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2840990	2843481	-	orf19.4932	2840990	2843481	1	2843481	2840990	2843438	2841153		orf19.12398|IPF22213.1|IPF12940.2|Contig4-2611_0010|orf6.5912|CA3603|MEF1|CaO19.12398|CaO19.4932	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2843627	2845071	-	orf19.4933	2843627	2845071	1	2845071	2843627	2845037	2843736	FAD3	orf19.12399|IPF22268.1|IPF12942.2|Contig4-2611_0011|orf6.5913|CA3604|CaO19.12399|ODE2|CaO19.4933|IPF12942	Omega-3 fatty acid desaturase, involved in production of alpha-linolenic acid, which is a major component of membranes; caspofungin induced; Plc1p-regulated; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2848585	2850423	+	orf19.4934	2848585	2850423	1	2848585	2850423	2848705	2849916	OP4	orf19.12400|IPF17845.2|IPF15453.1|Contig4-2962_0020|orf6.5914|orf6.6056|OPS4|CA3713|CaO19.4934	Ala- Leu- and Ser-rich protein; N-terminal hydrophobic region; possible glycosylation; gene is transcribed specifically in opaque-phase cells, repressed by alpha pheromone in opaque MTLa homozygotes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2853604	2853999	+	orf19.4936	2853604	2853999	1	2853604	2853999	2853604	2853999		orf19.12402|IPF22293.1|IPF7891.2|Contig4-2962_0015|orf6.6054|CA3712|CaO19.4936|CaO19.12402|IPF7891	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2855099	2855375	+	orf19.4936.1	2855099	2855375	1	2855099	2855375	2855099	2855314			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2855537	2855791	+	ntar_257	2855537	2855791	1	2855537	2855791					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2856255	2860412	-	orf19.4937	2856255	2860412	1	2860412	2856255	2859992	2856351	CHS3	orf19.12403|orf19.12404|IPF22336.1|IPF22321.1|IPF7889.2|IPF7886.2|Contig4-2962_0013|orf6.6053|orf6.6052|CHS3.3f|CHS3.5f|CA3711|CA3710|orf19.4938	Major chitin synthase of yeast-form and hyphal cells; synthesizes short-chitin fibrils; Chs4p-activated; transcription induced at yeast-hyphal transition; Chs1p and Chs2p, but not Chs3p, are inhibited by the protoberberine HWY-289 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2861144	2866365	-	orf19.4939	2861144	2866365	1	2866365	2861144	2866254	2861350		orf19.12405|IPF22294.1|IPF7880.2|Contig4-2962_0004|Contig4-2962_0005|Contig4-2962_0008|orf6.6051|CA3709|CaO19.4939|MON2|CaO19.12405|IPF7880	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2866591	2868635	-	orf19.4940	2866591	2868635	1	2868635	2866591	2868423	2866744		orf19.12406|IPF22247.1|IPF7876.2|Contig4-2962_0002|orf6.6050|HIP1|CA3708|CaO19.4940|CaO19.12406	Putative histidine permease; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2868870	2869912	-	orf19.4941	2868870	2869912	1	2869912	2868870	2869829	2869020	TYE7	orf19.12407|IPF22280.1|IPF5663.1|Contig4-2994_0001|orf6.6049|CA3707|CaO19.12407|CaO19.4941	Transcription factor with bHLH (basic region, helix-loop-helix) motif involved in control of glycolysis; hyphally regulated via Cph1p, Cyr1p; flucytosine, Hog1p induced; amphotericin B, caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2871070	2872104	+	orf19.4942	2871070	2872104	1	2871070	2872104	2871337	2871705		orf19.12408|IPF22323.1|IPF28213.1|Contig4-2994_0003|orf6.6048|CaO19.12408|CaO19.4942	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr1	2874278	2875711	+	orf19.4943	2874278	2875711	1	2874278	2875711	2874278	2875654	PSA2	orf19.12409|PSA1|IPF22264.1|IPF5668.1|Contig4-2994_0010|orf6.6047|CA3706|CaO19.12409|CaO19.4943	Predicted ORF in Assemblies 19, 20 and 21; macrophage-downregulated gene; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2875601	2879416	-	orf19.4945	2875601	2879416	1	2879416	2875601	2879371	2875727	MSH6	orf19.12411|IPF22327.1|IPF5670.1|Contig4-2994_0011|orf6.6045|CA3705|CaO19.12411|CaO19.4945	Protein similar to S. cerevisiae Msh6p, which is involved in mismatch repair; repressed under Cdc5p depletion [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2879648	2880409	+	orf19.4946	2879648	2880409	1	2879648	2880409	2879648	2880409		orf19.12412|IPF22282.1|IPF5671.2|Contig4-2994_0014|orf6.6044|CA3704|CaO19.4946|CaO19.12412|IPF5671	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2879949	2880166	-	ntar_258	2879949	2880166	1	2880166	2879949					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2880569	2881410	+	orf19.4947	2880569	2881410	1	2880569	2881410	2880732	2881241		IPF18761.2|IPF5672.2|Contig4-2994_0015|orf6.6043|CA1104|CaO19.4947|IPF18761|IPF18761.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2881235	2882794	-	orf19.4948	2881235	2882794	1	2882794	2881235	2882679	2881465		orf19.12413|IPF5673.2|IPF28194.1|Contig4-2994_0016|orf6.2434|orf6.6042|CA1103|REX3|CaO19.4948|IPF5673	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2883066	2883368	-	orf19.4949	2883066	2883368	1	2883368	2883066	2883368	2883066		IPF28234.1|orf6.6041|CaO19.4949	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2883397	2883771	+	ntar_259	2883397	2883771	1	2883397	2883771	2883397	2883615			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2883750	2886365	-	orf19.4950	2883750	2886365	1	2886365	2883750	2886263	2883822	AKR1	orf19.12414|IPF22207.1|IPF5675.1|Contig4-2994_0019|orf6.2433|CA1102|CaO19.4950|CaO19.12414	Ankyrin-repeat protein; increased transcription is observed upon fluphenazine treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2887636	2889563	+	orf19.4951	2887636	2889563	1	2887636	2889563	2888158	2889426		orf19.12415|IPF5678.1|IPF28195.1|Contig4-2994_0024|orf6.2432|CA1101|CaO19.4951|IPF5678	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2891054	2893171	+	orf19.4952	2891054	2893171	1	2891054	2893171	2891695	2892633		orf19.12417|IPF5681.2|IPF19696.1|Contig4-1718_0002|orf6.1485|orf6.2430|CA1100|CaO19.4952|IPF5681	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2893362	2894169	+	orf19.4952.1	2893362	2894169	2	2893362|2893647	2893539|2894169	2893446	2894008		IPF22326.1|IPF13976.2|Contig4-2314_0003	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2894251	2895373	+	orf19.4953	2894251	2895373	1	2894251	2895373	2894367	2895263		orf19.12418|IPF19466.2|IPF13975.2|Contig4-2314_0004|orf6.1486|orf6.44|CA0511|CaO19.4953|IPF13975	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2895226	2896307	-	orf19.4954	2895226	2896307	1	2896307	2895226	2896155	2895565		orf19.12419|IPF19467.1|IPF13974.2|Contig4-2314_0005|orf6.1487|orf6.43|CA0512|CaO19.4954|PPA1|VMA16	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2896460	2896690	+	ntar_260	2896460	2896690	1	2896460	2896690					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2896806	2898392	+	orf19.4955	2896806	2898392	2	2896806|2896939	2896878|2898392	2896806	2898392		orf19.12420|IPF22262.1|IPF13972.2|Contig4-3096_0020|orf6.1488|CA0513|SPS2|CaO19.4955|IPF13972	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=E]
Ca21chr1	2898330	2901591	-	orf19.4956	2898330	2901591	1	2901591	2898330	2901442	2898458	RPN1	orf19.12421|IPF9623.2|IPF19458.2|Contig4-1464_0001|Contig4-1464_0002|Contig4-2724_0012|orf6.2660|orf6.52|CA1252|CaO19.4956	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2901750	2901977	+	ntar_261	2901750	2901977	1	2901750	2901977					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2902432	2904676	+	orf19.4958	2902432	2904676	1	2902432	2904676	2902728	2904596	ECM25	orf19.12423|IPF9624.2|IPF19459.2|Contig4-2724_0008|orf6.2658|CA6293|IPF9624.3f	Non-essential protein involved in cell morphogenesis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2904704	2906833	-	orf19.4959	2904704	2906833	1	2906833	2904704	2906720	2904999		orf19.12424|IPF9626.1|IPF28186.1|Contig4-2724_0007|orf6.2657|CA1250|CaO19.4959|IPF9626	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2907188	2908570	-	orf19.4960	2907188	2908570	1	2908570	2907188	2908446	2907412		orf19.12425|IPF22274.1|IPF9628.2|Contig4-2724_0004|orf6.2656|CA1249|CaO19.12425|SPE4|CaO19.4960	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2909166	2909770	-	ntar_262	2909166	2909770	1	2909770	2909166	2909537	2909394			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2911515	2913771	+	orf19.4961	2911515	2913771	1	2911515	2913771	2911732	2913486	STP2	orf19.12426|IPF22239.1|IPF15844.2|Contig4-1523_0002|orf6.2844|CA1372|CaO19.4961|CaO19.12426|IPF15844	Transcription factor; activates transcription of genes encoding amino acid permeases; activated via amino-acid-induced proteolytic processing (Ssy1p and Csh3p dependent); also amino-acid-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2913658	2914912	-	orf19.4962	2913658	2914912	1	2914912	2913658	2914912	2913785		orf19.12427|IPF22269.1|IPF19731.1|Contig4-1523_0004|Contig4-2827_0019|orf6.2843|CA1371|CaO19.12427|CaO19.4962|IPF19731	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2915065	2916340	+	orf19.4963	2915065	2916340	1	2915065	2916340	2915143	2916339		orf19.12428|IPF22271.1|IPF15966.2|Contig4-1682_0003|orf6.2842|CA1370|CaO19.4963|TCI1|CaO19.12428	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2916144	2916334	-	ntar_263	2916144	2916334	1	2916334	2916144					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2916541	2917612	+	orf19.4964	2916541	2917612	1	2916541	2917612	2916611	2917456		orf19.12429|IPF22279.1|IPF15968.2|Contig4-1682_0001|orf6.2841|CA1369|CaO19.12429|CaO19.4964|IPF15968	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2917666	2919850	+	orf19.4965	2917666	2919850	1	2917666	2919850	2917715	2919805		orf19.12430|IPF22223.1|IPF15969.2|orf6.2840|CA1368|CaO19.4965|CaO19.12430|IPF15969	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2919892	2922610	-	orf19.4966	2919892	2922610	1	2922610	2919892	2922382	2920187		orf19.12431|IPF16755|IPF22217.1|IPF16755.2|Contig4-2421_0001|orf6.2839|YPR021C|CA1367|AGC1|CaO19.4966|CaO19.12431	Protein not essential for viability; transcription is alkaline upregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2925482	2926164	+	orf19.4967	2925482	2926164	2	2925482|2925638	2925567|2926164	2925549	2926017	COX19	orf19.12432|IPF13215.1|IPF17679.1|Contig4-2421_0006|orf6.1897|orf6.2838|CA0768|CaO19.4967	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2926044	2931142	-	orf19.4969	2926044	2931142	2	2931142|2930711	2930784|2926044	2930787	2926204	KEM1	orf19.12434|XRN1|IPF13214.2|IPF28204.1|Contig4-2907_0019|orf6.2836|orf6.1895|KEM1.3|CA0767|CaO19.4969	5'-->3' exoribonuclease; required for wild-type filamentous growth; not essential for viability; functionally complements S. cerevisiae kem1 mutant slow growth & mating and partially complements invasive growth & pseudohyphal growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2932190	2933917	-	orf19.4970	2932190	2933917	1	2933917	2932190	2933917	2932190		orf19.12435|IPF15335.2|IPF28185.1|Contig4-2387_0004|orf6.180|orf6.1894|CA0766|CaO19.4970|IPF15335	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2935076	2938628	-	orf19.4972	2935076	2938628	1	2938628	2935076	2937571	2935625		orf19.12437|IPF7964.2|IPF15920.1|Contig4-2387_0006|orf6.1556|orf6.1893|orf6.3141|CA0556|CaO19.4972|IPF15920	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2944456	2947553	+	orf19.4975	2944456	2947553	1	2944456	2947553	2944794	2947553	HYR1	orf19.12440|Contig4-2860_0006|GPX1|IPF19734.1|IPF19516.2|orf6.3143|orf6.857|CA1576|CaO19.4975|CA0557|HYR1.53|IPF7957.2	Nonessential, GPI anchored, predicted cell wall protein; macrophage-induced protein; induced in hyphae; induction associated with azole resistance; regulated by Rfg1p, Efg1p, Nrg1p, Tup1p, Cyr1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr1	2951250	2951606	+	orf19.4976	2951250	2951606	1	2951250	2951606	2951250	2951606		orf19.12443|IPF22315.1|IPF28200.1|orf6.3146|orf6.858|CaO19.4976	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2952187	2954246	+	orf19.4979	2952187	2954246	1	2952187	2954246	2952225	2954225	KNS1	orf19.12446|IPF11410.2|IPF28178.1|Contig4-2706_0013|orf6.3149|CA1577|CaO19.4979|CaO19.12446	Protein not essential for viability; similar to S. cerevisiae Kns1p, which is a protein kinase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2955674	2957947	+	orf19.4980	2955674	2957947	1	2955674	2957947	2955762	2957732	HSP70	orf19.12447|HS71|SSA1|IPF22233.1|IPF11819.2|SSA4|Contig4-2251_0001|CA1230|CaO19.4980|CaO19.12447|orf6.2627	Putative hsp70 chaperone; role in sensitivity to beta-defensins; heat-shock, amphotericin B, Cd, ketoconazole-induced; farnesol-downregulated in biofilm; farnesol-induced; surface localized in yeast-form and hyphal cells; antigenic in host [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2957899	2960767	-	orf19.4981	2957899	2960767	1	2960767	2957899	2960132	2958018		orf19.12448|IPF22224.1|IPF11817.2|Contig4-2251_0004|orf6.2628|CA1231|CaO19.4981|CaO19.12448|IPF11817	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2960986	2962844	-	orf19.4982	2960986	2962844	1	2962844	2960986	2962728	2961100		orf19.12449|IPF22252.1|IPF11815.2|Contig4-2494_0015|orf6.2629|CA1232|CaO19.12449|TGL99|CaO19.4982|IPF11815	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2963219	2964292	-	orf19.4983	2963219	2964292	1	2964292	2963219	2964210	2963395		orf19.12450|IPF1758.2|IPF11814.1|Contig4-2494_0009|orf6.2630|orf6.8026|CA1233|CaO19.4983|IPF11814	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2964351	2966422	+	orf19.4984	2964351	2966422	1	2964351	2966422	2964525	2966081		orf19.12451|IPF1760.2|IPF22206.1|IPF19907.2|IPF18120.1|Contig4-2494_0006|orf6.2631|orf6.8025|CA5275|IPF1760.3f|CA5276|IPF1759.53f|IPF1759.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2966582	2968760	+	orf19.4985	2966582	2968760	1	2966582	2968760	2966690	2968444	GUP1	orf19.12452|IPF22244.1|IPF1764.2|Contig4-2494_0003|orf6.8024|CA5274|CaO19.4985|CaO19.12452|IPF1764	Protein with role in glycerol uptake; functionally complements growth of S. cerevisiae gup1 mutant under salt stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2968520	2969961	-	orf19.4987	2968520	2969961	1	2969961	2968520	2969909	2968560	NUP49	orf19.12454|IPF22266.1|IPF1766.2|Contig4-2494_0001|orf6.8022|CA5273|CaO19.4987|CaO19.12454	Nuclear pore protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2970007	2971788	+	orf19.4988	2970007	2971788	1	2970007	2971788	2970121	2971638		orf19.12455|IPF22259.1|IPF1770.1|Contig4-3025_0024|orf6.8021|CA5272|CaO19.4988|CaO19.12455|IPF1770	Predicted ORF in Assemblies 19, 20 and 21; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2972831	2973662	+	ntar_264	2972831	2973662	1	2972831	2973662					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2975072	2975301	+	ntar_265	2975072	2975301	1	2975072	2975301					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2976102	2979816	+	orf19.4991	2976102	2979816	1	2976102	2979816	2976356	2979172	MPT5	orf19.12458|IPF22202.1|IPF1777.1|Contig4-3025_0018|Contig4-3025_0020|orf6.8018|CA5271|CaO19.4991|CaO19.12458|IPF1777	Protein induced during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	2981440	2984060	+	orf19.4993	2981440	2984060	1	2981440	2984060	2981615	2984005	SEC18	orf19.12460|orf19.12461|IPF22276.1|IPF22225.1|IPF22267.1|IPF1784.2|IPF1785.2|IPF1786.2|Contig4-3025_0011|Contig4-3025_0012|Contig4-3025_0013|orf6.8016|orf6.8015|CA5270|CA5268|orf19.4994|SEC18.5f	Functional homolog of S. cerevisiae Sec18p, which acts in protein transport; conserved ATP binding site; not glycosylated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2985121	2986353	+	orf19.4995	2985121	2986353	1	2985121	2986353	2985121	2986353		orf19.12462|IPF22270.1|IPF1787.1|Contig4-3025_0010|orf6.8014|CA5267|CaO19.12462|CaO19.4995|IPF1787.5f	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	2986453	2987427	+	orf19.4996	2986453	2987427	1	2986453	2987427	2986453	2987349		orf19.12463|IPF22278.1|IPF1789.1|Contig4-3025_0009|orf6.8013|CA5266|CaO19.4996|CaO19.12463|IPF1787.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	2987591	2990214	-	orf19.4997	2987591	2990214	1	2990214	2987591	2990032	2987795	KIS2	orf19.12464|IPF22214.1|IPF1792.1|Contig4-3025_0006|Contig4-3025_0007|orf6.8012|CA5265|CaO19.4997|CaO19.12464|IPF1792	Scaffold protein of Snf1p complex; similar to S. cerevisiae Gal83p and Sip2p; interacts with Snf4p; interaction with Snf1p complex is regulated by carbon source, decreased on ethanol; N-terminal myristoylation; Hog1p-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2990653	2990797	+	ntar_266	2990653	2990797	1	2990653	2990797					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2991018	2991235	+	ntar_267	2991018	2991235	1	2991018	2991235					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2993085	2996480	+	orf19.4998	2993085	2996480	2	2993085|2993461	2993394|2996480	2993348	2996389		orf19.12465|IPF22198.1|IPF1798.2|orf6.8011|CA5264|CaO19.4998|CHA4|CaO19.12465|IPF1798	Predicted ORF in Assemblies 19, 20 and 21; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	2997027	2999019	+	orf19.5000	2997027	2999019	1	2997027	2999019	2997207	2998889	CYB2	orf19.12467|orf6.8009|IPF22249.1|IPF1801.1|CYB3|Contig4-3061_0027|CA5263|CaO19.12467|CaO19.5000	Protein described as precursor protein of cytochrome b2; transcriptionally regulated by iron; expression greater in high iron; alkaline downregulated; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	2999251	2999602	-	ntar_268	2999251	2999602	1	2999602	2999251	2999576	2999430			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	2999788	3001737	+	orf19.5001	2999788	3001737	1	2999788	3001737	2999889	3001664	CUP2	orf19.12468|IPF22242.1|IPF1804.1|Contig4-3061_0022|Contig4-3061_0024|orf6.8008|CA5262|CaO19.5001|HAA1|CaO19.12468|IPF1804	Protein not essential for viability; similar to S. cerevisiae Cup2p, which is a copper-binding transcription factor that activates transcription of metallothionein genes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3001619	3003232	-	orf19.5003	3001619	3003232	1	3003232	3001619	3003092	3001746		orf19.12470|IPF22265.1|IPF1805.2|Contig4-3061_0021|orf6.8006|CA5261|CaO19.5003|CaO19.12470|IPF1805	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3003325	3006105	+	orf19.5004	3003325	3006105	1	3003325	3006105	3003486	3006032	RAD54	orf19.12471|IPF22209.1|IPF1807.1|Contig4-3061_0018|orf6.8005|CA5260|CaO19.5004|CaO19.12471	Protein similar to S. cerevisiae Rad54p, which is a DNA-dependent ATPase involved in DNA repair; induced under hydroxyurea treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3005487	3006102	-	ntar_269	3005487	3006102	1	3006102	3005487	3005942	3005802			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3006313	3008456	+	orf19.5005	3006313	3008456	1	3006313	3008456	3006473	3008419	OSM2	orf19.12472|IPF22234.1|IPF1808.1|Contig4-3061_0016|orf6.8004|CA5259|CaO19.12472|OSM1|CaO19.5005	Protein described as mitochondrial fumarate reductase; regulated by Ssn6p, Gcn2p, and Gcn4p; Hog1p-downregulated; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3008348	3009103	-	orf19.5006	3008348	3009103	1	3009103	3008348	3009024	3008491	GCV3	orf19.12473|IPF22289.1|IPF1809.1|Contig4-3061_0015|orf6.8003|CA5258|CaO19.5006|CaO19.12473	Predicted ORF in Assemblies 19, 20 and 21; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3009300	3010365	-	orf19.5006.1	3009300	3010365	2	3010365|3009851	3009924|3009300	3010010	3009603		IPF22222.1|Contig4-3061_0014|CA5256|orf19.5006.2|SNC2|CA5257|SNC2.exon2|IPF1811.1	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3011392	3013534	+	orf19.5007	3011392	3013534	2	3011392|3012132	3011473|3013534	3011464	3013252	ACT1	orf19.12474|ACT|IPF22272.1|IPF1819.1|Contig4-3061_0012|orf6.8002|CA5255	Actin; gene has intron; transcriptionally regulated by growth phase and by starvation; localizes to polarized growth site in budding and hyphal cells; required for wild-type Cdc42p localization; unprocessed N terminus [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3013367	3014001	-	orf19.5008.1	3013367	3014001	1	3014001	3013367	3013825	3013526		IPF22290.1|IPF1820.1|Contig4-3061_0011|CA5254|IPF1820	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3014055	3016087	+	orf19.5009	3014055	3016087	1	3014055	3016087	3014085	3016001		orf19.12476|IPF22235.1|IPF1821.1|Contig4-3061_0010|orf6.8000|CA5253|CaO19.5009|KEL3|CaO19.12476	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3015947	3017167	-	orf19.5010	3015947	3017167	1	3017167	3015947	3017083	3016103	DIM1	orf19.12477|IPF22277.1|IPF1822.1|Contig4-3061_0009|orf6.7999|CA5252|CaO19.5010|CaO19.12477	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Dim1p, which is an 18S rRNA dimethylase involved in rRNA modification and processing; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3017721	3020279	+	orf19.5011	3017721	3020279	1	3017721	3020279	3017916	3020192	KAR9	orf19.12478|IPF22215.1|IPF1824.1|Contig4-3061_0004|Contig4-3061_0005|Contig4-3061_0006|orf6.7998|CA5251|CaO19.5011|CaO19.12478|IPF1824	Protein similar to S. cerevisiae Kar9p, which has role in mitotic spindle positioning; nonessential; localizes to bud tip, bud neck, hyphal tip; wild-type localization requires actin and microtubule cytoskeleton; induced by alpha factor [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3019663	3020883	-	orf19.5012	3019663	3020883	1	3020883	3019663	3020879	3020283		orf19.12479|IPF22285.1|IPF1826.2|Contig4-3061_0003|orf6.7997|CA5250|CaO19.5012|CaO19.12479|IPF1826	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3021026	3022798	+	orf19.5013	3021026	3022798	1	3021026	3022798	3021071	3022705	AGM1	orf19.12480|IPF22253.1|IPF1827.2|Contig4-3061_0002|orf6.7996|CA5249|PCM1|CaO19.5013|CaO19.12480	Phosphoacetylglucosamine mutase (N-acetylglucosamine-phosphate mutase); enzyme of UDP-N-acetylglucosamine (UDP-GlcNAc) biosynthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3022296	3023568	-	orf19.5014	3022296	3023568	1	3023568	3022296	3023536	3022829		orf19.12481|IPF22283.1|IPF1828.1|Contig4-3061_0001|orf6.7995|CA5248|CaO19.12481|CaO19.5014|IPF1828	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3025427	3031015	+	orf19.5015	3025427	3031015	1	3025427	3031015	3026140	3030825	MYO2	orf19.12482|IPF22298.1|IPF13531.2|Contig4-2345_0002|Contig4-2345_0004|orf6.7994|CA5247|CaO19.5015|CaO19.12482	Class V myosin; nonessential; required for wild-type actin cytoskeletal polarity, nuclear organization and migration, and hyphal growth; sole class V myosin in C. albicans; conserved myosin ATPase and tail domains [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3030836	3031451	-	orf19.5016	3030836	3031451	1	3031451	3030836	3031406	3031041		orf19.12483|IPF19808|IPF22314.1|IPF19808.1|Contig4-2345_0001|orf6.7993|CA5246|CaO19.12483|CaO19.5016	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3031584	3033599	-	orf19.5017	3031584	3033599	1	3033599	3031584	3033599	3031584		orf19.12484|IPF22231.1|IPF3048.2|Contig4-3075_0002|orf6.7992|CA5245|DUR32|CaO19.12484|CaO19.5017	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3032213	3032718	+	ntar_270	3032213	3032718	1	3032213	3032718	3032446	3032622			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3033240	3033450	+	ntar_271	3033240	3033450	1	3033240	3033450	3033240	3033362			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3035108	3037466	+	orf19.5019	3035108	3037466	1	3035108	3037466	3035261	3037345		orf19.12486|IPF22226.1|IPF3043.1|Contig4-3075_0004|orf6.7990|CA5244|CaO19.5019|CaO19.12486|IPF3043	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3035482	3035670	-	ntar_272	3035482	3035670	1	3035670	3035482					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3037401	3038743	-	orf19.5020	3037401	3038743	1	3038743	3037401	3038662	3037640		orf19.12487|IPF22275.1|IPF3040.1|Contig4-3075_0006|orf6.7989|CA5243|CaO19.5020|CaO19.12487|IPF3040	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3038875	3040408	-	orf19.5021	3038875	3040408	1	3040408	3038875	3040358	3039105	PDX1	orf19.12488|IPF22263.1|IPF3038.1|Contig4-3075_0007|orf6.7988|CA5242|CaO19.12488|CaO19.5021	Pyruvate dehydrogenase complex protein X, an essential component of the mitochondrial pyruvate dehydrogenase complex which is involved in the respiratory pathway; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3041021	3043659	+	orf19.5022	3041021	3043659	1	3041021	3043659	3041533	3043548		orf19.12489|IPF22229.1|IPF3034.1|SMF2|Contig4-3075_0009|orf6.7987|CA5241|CaO19.12489|CaO19.5022|SMF3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3043640	3045169	-	orf19.5023	3043640	3045169	1	3045169	3043640	3045169	3043640	DAL7	orf19.12490|IPF3032|IPF22258.1|IPF3032.1|Contig4-3075_0010|orf6.7986|CA5240|CaO19.5023|CaO19.12490	Putative allantoate permease; fungal-specific (no human or murine homolog); not essential for viability [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3045802	3048283	-	orf19.5024	3045802	3048283	2	3048283|3047465	3048166|3045802	3048182	3045995	GND1	orf19.12491|IPF22257.1|IPF3028.2|Contig4-3075_0013|orf6.7985|CA5239|CaO19.5024|DOR14|CaO19.12491	Putative 6-phosphogluconate dehydrogenase; soluble protein in hyphae; farnesol-, macrophage-induced protein; antigenic in mouse; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3049142	3049811	+	ntar_273	3049142	3049811	1	3049142	3049811					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3051442	3053373	+	orf19.5025	3051442	3053373	1	3051442	3053373	3051624	3053207	MET3	orf19.12492|orf6.7984|IPF22255.1|IPF3022.1|Contig4-3075_0019|Contig4-3075_0020|CA5238|CaO19.5025|CaO19.12492	Putative ATP sulfurlyase of sulfate assimilation; repressed by Met or Cys, Sfu1p, or in fluconazole-resistant isolate; strongly induced on biofilm formation, even in presence of Met and Cys; Hog1p-, caspofungin-, possibly adherence-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3053446	3057630	-	orf19.5026	3053446	3057630	1	3057630	3053446	3057052	3053519		orf19.12493|IPF22331.1|IPF3021.1|Contig4-3075_0021|orf6.7983|CA5237|CaO19.5026|CaO19.12493|ZMS1	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3057469	3058059	+	ntar_274	3057469	3058059	1	3057469	3058059	3057811	3057981			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3060993	3061113	-	ntar_275	3060993	3061113	1	3061113	3060993					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3061122	3061194	-	ta(agc)7	3061122	3061194	1	3061194	3061122				tA(AGC)7.2	tRNA-Ala predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3061366	3063562	-	orf19.5027	3061366	3063562	1	3063562	3061366	3063251	3061542	LCB2	orf19.12494|IPF22245.1|IPF3017.1|Contig4-3075_0027|orf6.7982|CA5236|CaO19.5027|CaO19.12494	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to aureobasidin A [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3063852	3065578	-	orf19.5029	3063852	3065578	1	3065578	3063852	3065571	3063934	MODF	orf19.12496|IPF22250.1|IPF3015.1|Contig4-3075_0031|orf6.7980|CA5235|CaO19.5029|CaO19.12496|IPF3015	Predicted ORF in Assemblies 19, 20 and 21; ABC family protein; similar to E. coli ModF/PhrA protein, which may have a role in molybdate metabolism; no human or murine homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3065742	3065876	-	ntar_276	3065742	3065876	1	3065876	3065742					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3065917	3067270	+	orf19.5030	3065917	3067270	1	3065917	3067270	3066059	3067138		orf19.12497|IPF18123.2|IPF3014.1|Contig4-3075_0032|orf6.7979|CA5234|CaO19.5030|CaO19.12497|IPF3014	Predicted ORF in Assemblies 19, 20 and 21; induced during planktonic growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3067493	3069954	+	orf19.5031	3067493	3069954	1	3067493	3069954	3067600	3069624	SSK1	orf19.12498|orf6.7978|IPF22230.1|IPF3012.2|CA5233|CaO19.12498|CaO19.5031	Response regulator of two-component system; role in oxidative stress response, cell wall biosynthesis, virulence, hyphal growth on solid media; expressed in hyphae and yeast-form cells; putative peroxisomal targeting sequence (PTS1) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3073023	3073272	+	ntar_277	3073023	3073272	1	3073023	3073272					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3074049	3075708	+	orf19.5032	3074049	3075708	1	3074049	3075708	3074225	3075343	SIM1	orf19.12499|IPF22273.1|IPF10421.1|Contig4-2686_0006|orf6.7977|SUN42|CA5232|CaO19.5032|UTH1|CaO19.12499	Protein involved in cell wall maintenance, redundant with Sun41p; described as a DNA replication regulator; produced under vaginal conditions; macrophage-downregulated gene; transcription is negatively regulated by Rim101p, Cyr1p, Ras1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3075613	3076466	-	orf19.5033	3075613	3076466	1	3076466	3075613	3076326	3075832		orf19.12500|IPF22292.1|IPF10422.1|Contig4-2686_0005|orf6.7976|CA5231|ATG12|CaO19.12500|CaO19.5033|IPF10422	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3076610	3078822	+	orf19.5034	3076610	3078822	1	3076610	3078822	3076673	3078670		orf19.12501|IPF22219.1|IPF10424.1|Contig4-2686_0004|orf6.7975|CA5230|YBP1|CaO19.12501|CaO19.5034|IPF10424	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3078610	3080586	-	orf19.5035	3078610	3080586	1	3080586	3078610	3080366	3078708		orf19.12502|IPF22251.1|IPF10425.1|Contig4-2686_0002|orf6.7974|CA5229|HPC2|CaO19.5035|CaO19.12502|IPF10425	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3080876	3083648	-	orf19.7205	3080876	3083648	1	3083648	3080876	3083072	3081048	DUR7	IPF901.1|Contig4-3075_0002|CA5331|DUR33.5eoc|DUR33|orf6.8105	Putative urea transporter; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	3083753	3084576	+	orf19.7206	3083753	3084576	1	3083753	3084576	3083829	3084437	OCA6	IPF900.2|Contig4-3017_0006|orf6.8106|CA5332|CaO19.7206|IPF900.3f|IPF900.3	Putative protein phosphatase of the PTP family (tyrosine-specific), similar to <i>S. cerevisiae</i> Oca6p; mutant shows virulence defect [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3084346	3086905	-	orf19.7207	3084346	3086905	1	3086905	3084346	3086875	3084440	DOA4	IPF899.1|Contig4-3017_0010|orf6.8107|CA5333|CaO19.7207	Protein not essential for viability; similar to S. cerevisiae Doa4p, which is ubiquitin hydrolase, involved in recycling ubiquitin from proteasome-bound ubiquitinated intermediates; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3087751	3088943	+	orf19.7208	3087751	3088943	2	3087751|3088101	3088032|3088943	3087751	3088943	CSK1	SMK1|IPF895.1|Contig4-3017_0013|orf6.8108|CA5334	[NOT TRANSCRIBED?] Putative mitogen-activated protein (MAP) kinase with an unknown role; null mutant produces wrinkled colonies; similar to S. cerevisiae Smk1p, which is a protein kinase required for sporulation [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3089336	3089743	+	orf19.7209	3089336	3089743	1	3089336	3089743	3089336	3089743		IPF894.1|Contig4-3017_0014|orf6.8109|CA5335|CaO19.7209|IPF894	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3089974	3091090	+	orf19.7210	3089974	3091090	1	3089974	3091090	3090053	3091060		IPF893.1|Contig4-3017_0016|orf6.8110|CA5336|CaO19.7210|IPF893	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3091220	3093651	+	orf19.7212	3091220	3093651	1	3091220	3093651	3091220	3093523		IPF891.1|Contig4-3017_0017|orf6.8112|CA5337|CaO19.7212|APL1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3093485	3096946	-	orf19.7213	3093485	3096946	1	3096946	3093485	3096896	3093525		IPF889.2|Contig4-3017_0019|Contig4-3017_0020|orf6.8113|CA5338|CaO19.7213|IPF889	Putative ATP-dependent RNA helicase; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3097085	3098991	+	orf19.7214	3097085	3098991	1	3097085	3098991	3097299	3098807		IPF885.1|Contig4-3017_0021|orf6.8114|CA5339|CaO19.7214|IPF885	Similar to glucan 1,3-beta-glucosidase; regulated by Nrg1p, Tup1p; possibly regulated by Tac1p; induced upon biofilm formation; induced by nitric oxide; induced during cell wall regeneration; detected by mass spec in stationary phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3099386	3104927	+	orf19.7215	3099386	3104927	1	3099386	3104927	3099412	3104868		IPF883.1|Contig4-3017_0022|orf6.8115|CA5340|CaO19.7215|IPF883	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3105046	3105567	+	orf19.7215.3	3105046	3105567	2	3105046|3105159	3105097|3105567	3105095	3105476		IPF878.1|Contig4-2519_0001|CA5341|HSP10|HSP10.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3105779	3106769	+	orf19.7216	3105779	3106769	1	3105779	3106769	3105892	3106557		IPF877.1|Contig4-2519_0002|orf6.8116|CA5342|YPT521|CaO19.7216	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3106740	3107884	-	orf19.7217	3106740	3107884	1	3107884	3106740	3107870	3106779	RPL4B	IPF875.1|Contig4-2519_0003|orf6.8117|CA5343|RPL4|CaO19.7217	Putative ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3108053	3109128	-	orf19.7218	3108053	3109128	1	3109128	3108053	3109061	3108246	RBE1	PRY2|IPF872.1|Contig4-2519_0004|orf6.8118|CA5344|CaO19.7218	Putative cell wall protein; transcription is negatively regulated by Rim101p, Efg1p, Ssn6p; alkaline downregulated; predicted signal sequence, O-glycosylation; no GPI anchor predicted [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3112465	3113343	+	ntar_278	3112465	3113343	1	3112465	3113343					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3113471	3115478	+	orf19.7219	3113471	3115478	1	3113471	3115478	3113806	3114951	FTR1	orf6.8119|IPF868.1|Contig4-3043_0004|CA5345|CaO19.7219	High-affinity iron permease (ferric citrate, ferrioxamines E or B, transferrin); required for mouse virulence, low-iron growth; iron, amphotericin B, caspofungin, ciclopirox, Hog1p regulated; complements S. cerevisiae ftr1 iron transport [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3115434	3118996	-	orf19.7221	3115434	3118996	1	3118996	3115434	3118760	3115551	SET3	IPF867.2|Contig4-3043_0006|Contig4-3043_0007|orf6.8121|CA5346|CaO19.7221|IPF867	Protein similar to S. cerevisiae Set3p, which is an NAD-dependent histone deacetylase; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3119409	3120054	+	ntar_279	3119409	3120054	1	3119409	3120054	3119583	3119759			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3119723	3120873	-	orf19.7222	3119723	3120873	1	3120873	3119723	3120326	3119961	PAM16	IPF864.1|Contig4-3043_0009|orf6.8122|CA5347|CaO19.7222|IPF864	Protein described as similar to maltase; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3121116	3123015	+	orf19.7223	3121116	3123015	1	3121116	3123015	3121139	3122893		IPF863.1|Contig4-3043_0010|orf6.8123|CA5348|CaO19.7223|IPF863	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3123185	3125088	+	orf19.7224	3123185	3125088	1	3123185	3125088	3123255	3124931		IPF861.1|Contig4-3043_0014|orf6.8124|CA5349|CaO19.7224|IPF861	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3125467	3127099	+	orf19.7225	3125467	3127099	1	3125467	3127099	3125467	3127038		IPF859.1|Contig4-3043_0016|orf6.8125|CA5350|CaO19.7225|IPF859	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr1	3127013	3127472	-	orf19.7227	3127013	3127472	1	3127472	3127013	3127472	3127098		IPF857.1|Contig4-3043_0017|orf6.8127|CA5351|CaO19.7227|YPI1|IPF857	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	3127776	3128918	+	orf19.7228	3127776	3128918	1	3127776	3128918	3127809	3128801		IPF856.1|Contig4-3043_0018|orf6.8128|CA5352|CaO19.7228|IPF856	Putative protein of unknown function, transcription is positively regulated by Tbf1p; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3128757	3131821	-	orf19.7229	3128757	3131821	1	3131821	3128757	3131465	3128865	IML2	IPF855.1|Contig4-3043_0019|orf6.8129|CA5353|CaO19.7229	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3132252	3132784	+	ntar_280	3132252	3132784	1	3132252	3132784					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3132811	3134492	-	orf19.7231	3132811	3134492	1	3134492	3132811	3134269	3133121	FTR2	orf6.8131|IPF853.1|Contig4-3043_0021|CA5354|CaO19.7231	High-affinity iron permease; not required for mouse systemic virulence; regulated by iron level, ciclopirox olamine, amphotericin B, caspofungin; complements S. cerevisiae ftr1 iron transport defect; probably interacts with ferrous oxidase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3134618	3134771	-	ntar_281	3134618	3134771	1	3134771	3134618					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3135470	3138938	-	orf19.7232	3135470	3138938	1	3138938	3135470	3138881	3135612	IRR1	IPF850.1|Contig4-3043_0023|orf6.8132|orf6.8133|CA5355|CA5356|orf19.7233|IRR1.3f	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3139177	3140969	+	orf19.7234	3139177	3140969	1	3139177	3140969	3139214	3140899		IPF848.1|Contig4-3014_0004|orf6.8134|CA5357|CaO19.7234|RSC8	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3140971	3143888	-	orf19.7235	3140971	3143888	1	3143888	3140971	3143753	3141075		IPF846.1|Contig4-3014_0006|orf6.8135|CA5358|CaO19.7235|IPF846	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3144200	3145181	-	orf19.7236	3144200	3145181	1	3145181	3144200	3145130	3144291	TIF35	IPF842.1|Contig4-3014_0009|orf6.8136|CA5359|CaO19.7236	Putative translation initiation factor; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3145289	3146460	+	orf19.7237	3145289	3146460	1	3145289	3146460	3145510	3146313		IPF839.1|Contig4-3014_0013|orf6.8137|CA5360|CaO19.7237|IPF839	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3146294	3147677	-	orf19.7238	3146294	3147677	1	3147677	3146294	3147648	3146788	NPL3	IPF837.1|Contig4-3014_0016|orf6.8138|CA5361|CaO19.7238	Putative RNA-binding protein, ortholog of S. cerevisiae Npl3p; nuclear export is facilitated by Hmt1p; transcription is upregulated in an RHE model of oral candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3148005	3150406	-	orf19.7239	3148005	3150406	2	3150406|3150054	3150303|3148005	3150328	3148098		IPF836.1|Contig4-3014_0017|orf6.8139|CA5362|IPF836.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=F]
Ca21chr1	3151059	3154910	-	orf19.7242	3151059	3154910	1	3154910	3151059	3154898	3151128	NCR1	IPF829.1|Contig4-3014_0027|orf6.8142|CA5363|CaO19.7242	Transcription is regulated by Nrg1p and Mig1p; increased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3155133	3156307	+	orf19.7243	3155133	3156307	1	3155133	3156307	3155237	3156250		IPF825.1|Contig4-3014_0028|orf6.8143|CA5364|CaO19.7243|DCD1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3156186	3157085	-	orf19.7244	3156186	3157085	1	3157085	3156186	3156949	3156254		IPF824.1|Contig4-3014_0029|orf6.8144|CA5365|FAH1|CaO19.7244|IPF824	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3157175	3158582	+	orf19.7245	3157175	3158582	1	3157175	3158582	3157230	3158501		IPF823.1|Contig4-3014_0031|orf6.8145|CA5366|CaO19.7245|IPF823	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3158572	3160835	-	orf19.7247	3158572	3160835	1	3160835	3158572	3160657	3158672	RIM101	orf6.8147|HRM101|PRR2|IPF822.2|Contig4-3014_0032|CA5367|CaO19.7247	Transcription factor involved in alkaline pH response; required for alkaline-induced hyphal growth; role in virulence in mouse systemic infection; activated by C-terminal proteolytic cleavage; mediates both positive and negative regulation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3161228	3161695	+	ntar_282	3161228	3161695	1	3161228	3161695					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3162261	3162851	+	orf19.7250	3162261	3162851	1	3162261	3162851	3162285	3162728		IPF5257.1|Contig4-2986_0001|orf6.8150|CA5368|YPI2|CaO19.7250|IPF5257	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3162739	3164447	-	orf19.7251	3162739	3164447	1	3164447	3162739	3164394	3162919	WSC4	IPF5256.1|Contig4-2986_0002|orf6.8151|CA5369|CaO19.7251	Transcription is specific to white cell type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3164929	3165252	+	orf19.7252	3164929	3165252	1	3164929	3165252	3164929	3165252		IPF27358.1|orf6.8152|CaO19.7252	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3165574	3167505	-	orf19.7254	3165574	3167505	1	3167505	3165574	3167470	3165671		IPF5248.1|Contig4-2986_0003|Contig4-2986_0005|orf6.8154|CA5370|CaO19.7254|IPF5248	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3167557	3167950	+	orf19.7255	3167557	3167950	1	3167557	3167950	3167578	3167799	RPC10	IPF5246.1|Contig4-2986_0006|orf6.8155|CA5371|CaO19.7255	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3167785	3169721	-	orf19.7257	3167785	3169721	1	3169721	3167785	3169721	3167811		IPF5245.2|Contig4-2986_0007|orf6.8157|CA5372|CaO19.7257|MLH3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr1	3169692	3171106	+	orf19.7258	3169692	3171106	1	3169692	3171106	3170037	3171008	DDI1	IPF5241.2|Contig4-2986_0012|orf6.8158|CA5374|CaO19.7258	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr1	3170951	3171784	-	orf19.7260	3170951	3171784	1	3171784	3170951	3171784	3171005		IPF5239.2|Contig4-2986_0013|orf6.8160|CA5375|CaO19.7260|IPF5239	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3171793	3173200	-	orf19.7261	3171793	3173200	1	3173200	3171793	3173195	3171846		IPF5237.2|Contig4-2986_0014|orf6.8161|CA5376|CaO19.7261|GDI1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3173216	3174616	-	orf19.7263	3173216	3174616	1	3174616	3173216	3174603	3173251		IPF5234.2|Contig4-2986_0015|Contig4-2986_0016|orf6.8163|CA5377|CaO19.7263|IPF5234	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3174674	3175633	+	orf19.7264	3174674	3175633	1	3174674	3175633	3174695	3175633		IPF5231.1|Contig4-2986_0017|orf6.8164|CA5378|CaO19.7264|RPN11|MPR1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3175688	3176416	+	orf19.7265	3175688	3176416	1	3175688	3176416	3175688	3176416		IPF5228.1|Contig4-2986_0018|orf6.8165|CA5379|UBP10|CaO19.7265|IPF5228.5	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3176504	3176857	+	orf19.7266	3176504	3176857	1	3176504	3176857	3176504	3176818		IPF5225.1|Contig4-2986_0021|orf6.8166|CaO19.7266	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3176747	3177547	-	orf19.7267	3176747	3177547	1	3177547	3176747	3177540	3176785		IPF5224.1|Contig4-2986_0022|orf6.8167|CA5380|CaO19.7267|IPF5224	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3177571	3178435	-	orf19.7269	3177571	3178435	1	3178435	3177571	3178260	3177598		IPF5222.1|Contig4-2986_0024|orf6.8169|CA5381|CaO19.7269|PAA11|IPF5222	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3178674	3178901	-	ntar_283	3178674	3178901	1	3178901	3178674					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3178762	3180945	+	orf19.7270	3178762	3180945	1	3178762	3180945	3179728	3180789		IPF5217.1|Contig4-2986_0029|orf6.8170|CA5382|CaO19.7270|IPF5217	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3180927	3181775	-	ntar_284	3180927	3181775	1	3181775	3180927	3181480	3181295			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3180978	3181907	+	orf19.7271	3180978	3181907	1	3180978	3181907	3181309	3181629		IPF5214.1|Contig4-2986_0030|orf6.8171|CaO19.7271	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr1	3182792	3183124	-	orf19.7272	3182792	3183124	1	3183124	3182792	3183124	3182792		IPF13996.1|Contig4-2986_0033|orf6.8172|CaO19.7272	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3183339	3184316	-	orf19.7274	3183339	3184316	1	3184316	3183339	3184316	3183339		IPF14001.1|Contig4-2250_0004|Contig4-2250_0005|Contig4-2986_0035|orf6.8173|orf6.8174|CA5383|CA5384|orf19.7273|Zorro1b.5f	Predicted ORF in retrotransposon Zorro2 with similarity to retroviral reverse transcriptase proteins [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3183482	3183769	+	ntar_285	3183482	3183769	1	3183482	3183769					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr1	3184588	3185304	-	orf19.7275	3184588	3185304	1	3185304	3184588	3185304	3184588	FGR24	IPF14003.1|Contig4-2250_0008|Contig4-2250_0010|orf6.8175|orf6.8177|CA5385|Zorro2b.3f	Protein encoded in retrotransposon Zorro2 with similarity to retroviral endonuclease-reverse transcriptase proteins; lacks an ortholog in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3185382	3185909	-	orf19.7277	3185382	3185909	1	3185909	3185382	3185909	3185382		orf6.8177|CA5386|CaO19.7277|Zorro2b.5f|IPF14005.1	Predicted ORF in retrotransposon Zorro2 with similarity to zinc finger-containing retroviral nucleocapsid proteins; un-merged from orf19.7275 in a revision of Assembly 21 based on comparative genome analysis and new sequence data [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr1	3186501	3187101	-	orf19.7276.1	3186501	3187101	1	3187101	3186501	3186870	3186670	TLO4	IPF14006.2|CA5387|CTA213.3|CTA24.3	Member of a family of telomere-proximal genes of unknown function; transcription is upregulated in an RHE model of oral candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr1	3187867	3188547	-	orf19.7278	3187867	3188547	1	3188547	3187867	3188133	3187867			 [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	83	854	-	ntar_286	83	854	1	854	83	652	530			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	4248	4778	+	orf19.1925	4248	4778	1	4248	4778	4248	4778	TLO5	orf19.9481|IPF17379.3|IPF14847.1|orf6.1954|orf6.5530|CA0809|TLO5b|CTA222|CaO19.9481|CTA212|CaO19.1925	Member of a family of telomere-proximal genes of unknown function; may be spliced in vivo [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	5265	5583	-	ntar_287	5265	5583	1	5583	5265					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	5655	7363	+	orf19.1923	5655	7363	1	5655	7363	5665	7335	RRN3	orf19.9479|IPF19884.2|IPF19708.1|orf6.1957|CA0810|CaO19.1923|CaO19.9479	Predicted ORF in Assemblies 19, 20 and 21; caspofungin induced, flucytosine repressed; downregulated in core stress response; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	7396	7467	-	tv(cac)1	7396	7467	1	7467	7396				tV(CAC)1.2	tRNA-Val predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	7510	8043	-	orf19.1920	7510	8043	1	8043	7510	8043	7510		orf19.9476|IPF25405.1|IPF17625.2|orf6.1959|CA0811|CIS301|CaO19.1920|CaO19.9476|IPF17625	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	8106	9289	-	orf19.1917	8106	9289	1	9289	8106	9289	8144		orf19.9473|IPF25402.1|IPF16243.2|orf6.1962|CA0812|CaO19.1917|AES6|CaO19.9473|IPF3348	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	9319	11063	-	orf19.1915	9319	11063	1	11063	9319	11063	9360	MPP10	orf19.9471|IPF19846.2|IPF16234.2|orf6.1964|orf6.803|CA0813|CaO19.1915	Predicted ORF in Assemblies 19, 20 and 21; downregulated in core stress response; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	11100	12537	-	orf19.1914	11100	12537	1	12537	11100	12443	11100	FAV3	orf19.9470|IPF15437.1|IPF16233.1|Contig4-2107_0001|orf6.1965|orf6.802|CA0814|AMAN6|CaO19.1914|IPF16233	Induced by mating factor in MTLa/MTLa opaque cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	12626	13348	+	orf19.1913	12626	13348	1	12626	13348	12627	13253		orf19.9469|IPF15439.1|IPF16231.2|Contig4-2107_0003|orf6.1966|orf6.801|CA0815|CaO19.1913|IPF16231	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	13211	14499	-	orf19.1911	13211	14499	1	14499	13211	14415	13261	PGA52	orf19.9467|IPF15442.1|IPF14463.2|Contig4-2107_0004|Contig4-2832_0018|orf6.1967|orf6.799|CA0188|CaO19.1911|IPF15442	GPI-anchored cell surface protein of unknown function; fluconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	14811	15573	+	orf19.1910	14811	15573	1	14811	15573	14823	15446		orf19.9466|IPF15444.2|IPF14465.1|Contig4-2832_0017|orf6.1269|orf6.798|CA0389|CaO19.1910|IPF14465	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	15434	17652	-	orf19.1907	15434	17652	1	17652	15434	17610	15457	EMC9	orf19.9463|IPF14468|IPF25401.1|IPF14468.2|Contig4-2832_0014|Contig4-2832_0015|orf6.1266|orf6.797|CA0388|CaO19.1907	Protein not essential for viability, induced during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	17572	17955	+	ntar_288	17572	17955	1	17572	17955	17572	17775			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	18818	19148	+	orf19.1906	18818	19148	1	18818	19148	18818	19147		orf19.9462|IPF25415.1|IPF29267.1|orf6.1265|CaO19.1906|CaO19.9462	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	19400	21344	+	orf19.2119	19400	21344	1	19400	21344	19427	21205	NDT80	orf19.9667|IPF25251.1|IPF10318.1|Contig4-2832_0009|orf6.4742|CA2727|NDT801|CaO19.2119|CaO19.9667|IPF10318	Activator of CDR1 induction by antifungal drugs; required for wild-type drug resistance; transcriptionally induced upon antifungal drug treatment; similar to S. cerevisiae Ndt80p, which is a meiosis-specific transcriptional regulator [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	21516	22809	+	orf19.2117	21516	22809	1	21516	22809	21541	22767	LEU5	orf19.9665|IPF10322.1|IPF29217.1|Contig4-2832_0008|orf6.4744|CA2728|CaO19.2117|CaO19.9665|IPF10322	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	22631	23437	-	orf19.2116	22631	23437	1	23437	22631	23431	22793	NAT2	orf19.9664|IPF10323.1|IPF19438.2|Contig4-2832_0007|orf6.118|orf6.4745|CA2729|CaO19.2116	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	23461	24820	-	orf19.2115	23461	24820	1	24820	23461	24816	23512		orf19.9663|IPF10325.2|IPF19439.2|Contig4-2832_0006|orf6.117|orf6.4746|CA2730|CaO19.2115|IPF10325	Putative molybdopterin-converting factor; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	24867	25834	-	orf19.2114	24867	25834	1	25834	24867	25825	24914		orf19.9662|IPF25286.1|IPF10326.2|Contig4-2832_0004|orf6.4747|CA2731|URO99|CaO19.9662|CaO19.2114|URIC	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	25989	27473	-	orf19.2113	25989	27473	1	27473	25989	27426	26038		orf19.9661|IPF25263.1|IPF10327.2|Contig4-2832_0003|orf6.4748|CA2732|CaO19.2113|PEX30|CaO19.9661|IPF10327	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	27544	28398	+	orf19.2112	27544	28398	1	27544	28398	27586	28398		orf19.9660|IPF18423.2|IPF10329.2|Contig4-2832_0002|orf6.4749|CA2733|CaO19.9660|PRP18|CaO19.2112	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	28536	28967	+	orf19.2111.2	28536	28967	1	28536	28967	28566	28802	RPL38	IPF25223.1|IPF10330.2|CA2734	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	28863	30079	-	orf19.2111	28863	30079	1	30079	28863	30051	28906		orf19.9659|IPF25270.1|IPF19765.1|orf6.4750|CA2735|CaO19.9659|TFG2|CaO19.2111	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	30124	32126	+	orf19.2110	30124	32126	1	30124	32126	30175	31563		orf19.9658|IPF25264.1|IPF15421.2|Contig4-1579_0002|orf6.4751|CA2736|CaO19.9658|ATE1|CaO19.2110	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	31508	32634	-	orf19.2108	31508	32634	1	32634	31508	32587	31637	SOD6	orf19.9656|PGA9|IPF25284.1|IPF15423.2|SOD33|Contig4-1579_0007|Contig4-1856_0002|orf6.4753|CA2737|CaO19.9656|CaO19.2108|IPF15423	Copper- and zinc-containing superoxide dismutase; expression regulated during planktonic growth; member of a gene family that includes SOD1, SOD4, SOD5, and SOD6; gene may contain an intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	33011	33800	+	orf19.2107.1	33011	33800	1	33011	33800	33351	33620	STF2	IPF25220.1|IPF15425.2|Contig4-1856_0004|CA2738	Protein involved in ATP biosynthesis; decreased expression in hyphae compared to yeast-form cells; downregulated by Efg1p; transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	33610	34884	-	orf19.2107	33610	34884	2	34884|34727	34784|33610	34856	33682	MUQ1	orf19.9655|IPF25279.1|IPF10634.2|Contig4-1856_0005|orf6.4754|CA2739|CaO19.2107|CaO19.9655	Protein described as choline phosphate cytidylyltransferase/phosphoethanolamine cytidylyltransferase; decreased expression in hyphae compared to yeast-form cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	34925	35744	-	orf19.2106	34925	35744	1	35744	34925	35686	34979		orf19.9654|IPF25293.1|IPF10633.1|Contig4-2610_0003|orf6.4755|CA2740|CaO19.9654|CaO19.2106|IPF10633	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	35757	36429	-	orf19.2105	35757	36429	1	36429	35757	36407	35757		orf19.9653|IPF25303.1|IPF10632.1|Contig4-2610_0004|orf6.4756|CA2741|CaO19.9653|CWC24|CaO19.2105|IPF10632	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	36486	37334	+	orf19.2104	36486	37334	1	36486	37334	36551	37180		orf19.9652|IPF18422.2|IPF10631.1|Contig4-2610_0005|orf6.4757|CA2742|JAC1|CaO19.2104|CaO19.9652	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	37152	38400	-	orf19.2102	37152	38400	1	38400	37152	38158	37277	CKB1	orf19.9650|CKB21|IPF25288.1|IPF10630.1|Contig4-2610_0007|orf6.4759|CA2743|CaO19.2102|CaO19.9650	Regulatory subunit of protein kinase CK2 (casein kinase II), beta subunit [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	37603	38049	+	orf19.2103	37603	38049	1	37603	38049	37603	38049			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	38505	39372	+	orf19.2101	38505	39372	1	38505	39372	38528	39127		orf19.9649|IPF25301.1|IPF10626.1|Contig4-2610_0009|orf6.4760|CA2744|CaO19.2101|CaO19.9649|IPF10626	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	38912	41976	-	orf19.2099	38912	41976	2	41976|41842	41909|38912	41945	39156		orf19.9647|IPF10625.2|IPF29209.1|Contig4-2610_0010|orf6.4762|CA2745|HIR1|CaO19.2099|CaO19.9647|HIR1.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	42026	43631	-	orf19.2098	42026	43631	1	43631	42026	43586	42111	ARO8	orf19.9645|IPF10616.3|IPF1147.2|Contig4-2564_0008|orf6.4764|orf6.7457|CA4804|CaO19.2098	Aromatic transaminase of the Ehrlich fusel oil pathway of aromatic alcohol biosynthesis; Rim101p-independent pH-regulation (alkaline induced); protein abundance is affected by URA3 expression in the CAI-4 strain background; Gcn4p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	44195	47584	+	orf19.2097	44195	47584	1	44195	47584	44288	47542		orf19.9644|IPF25340.1|IPF1153.2|Contig4-2564_0004|Contig4-2564_0005|Contig4-2564_0006|orf6.7458|CA4805|RAD5|CaO19.9644|CaO19.2097	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	47572	49832	-	orf19.2095	47572	49832	1	49832	47572	49686	47587		orf19.9642|IPF25234.1|IPF1155.2|Contig4-2564_0001|orf6.7460|CA4806|CaO19.9642|CaO19.2095|IPF1155	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	50021	50281	-	ntar_289	50021	50281	1	50281	50021	50281	50066			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	50241	53330	+	orf19.2094	50241	53330	1	50241	53330	50262	53276	PDR6	orf19.9641|IPF25339.1|IPF1158.2|Contig4-2971_0021|Contig4-2971_0023|Contig4-2971_0025|Contig4-2971_0026|Contig4-2971_0027|orf6.7461|CA4807|KAP122|CaO19.9641|CaO19.2094	Transcription is regulated by Nrg1p; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	53264	55253	-	orf19.2093	53264	55253	1	55253	53264	55237	53363	RFA1	orf19.9640|IPF25239.1|IPF1160.1|Contig4-2971_0020|orf6.7462|CA4808|CaO19.9640|CaO19.2093	Protein described as DNA replication factor A; RNA abundance regulated by cell cycle, tyrosol and cell density [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	55355	56780	-	orf19.2092	55355	56780	1	56780	55355	56710	55496		orf19.9639|IPF25274.1|IPF1162.1|Contig4-2971_0019|orf6.7463|CA4809|STR3|CaO19.2092|CaO19.9639|IPF1162	Predicted ORF in Assemblies 19, 20 and 21; Gcn4p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	56885	57899	-	orf19.2091	56885	57899	1	57899	56885	57810	57079		orf19.9638|IPF25295.1|IPF1164.2|Contig4-2971_0016|orf6.7464|CA4810|CaO19.2091|CaO19.9638|IPF1164	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	59037	62998	-	orf19.2090	59037	62998	1	62998	59037	62936	59145		orf19.9637|IPF25327.1|IPF1169.2|Contig4-2971_0013|orf6.7465|CA4811|CaO19.9637|ECM16|CaO19.2090	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	63170	64283	+	orf19.2089	63170	64283	2	63170|63360	63284|64283	63257	64177		orf19.9636|IPF25290.1|IPF1171.1|Contig4-2971_0010|orf6.7466|CA4812|CaO19.9636|NYV1|CaO19.2089|IPF1171.3f|IPF1171	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	64008	65038	-	orf19.2088	64008	65038	1	65038	64008	64994	64209		orf19.9635|IPF25294.1|IPF1174.1|Contig4-2971_0009|orf6.7467|CA4813|CaO19.2088|DPB4|CaO19.9635	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	65148	66314	+	orf19.2087	65148	66314	1	65148	66314	65234	66292	SAS2	orf19.9634|IPF25278.1|IPF1176.1|Contig4-2971_0008|orf6.7468|CA4814|CaO19.9634|CaO19.2087	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	66243	68433	-	orf19.2084	66243	68433	1	68433	66243	68137	66344	CDH1	orf19.9631|IPF25246.1|IPF20022.1|Contig4-2971_0006|orf6.7471|CA4815|CaO19.2084|CaO19.9631	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	69105	70412	+	orf19.2082	69105	70412	1	69105	70412	69105	70412	SAP30	orf19.9629|IPF25266.1|IPF1183.2|Contig4-2971_0003|orf6.7473|CA4816|BAR1|CaO19.9629|CaO19.2082|IPF1183	Aspartic-type endopeptidase involved in degradation of alpha pheromone; functional equivalent of S. cerevisiae Bar1p; specific to a-cells; transcription is induced in response to alpha pheromone [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	70624	74591	+	orf19.2081	70624	74591	1	70624	74591	70672	74457		orf19.9628|IPF25328.1|IPF1191.2|orf6.7474|CA4817|POM152|CaO19.2081|CaO19.9628	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	74497	75167	-	orf19.2079	74497	75167	1	75167	74497	74922	74578	PHHB	orf19.9626|IPF25331.1|IPF1193.1|Contig4-3072_0032|orf6.7476|CA4818|CaO19.9626|CaO19.2079|IPF1193	Transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	75534	77752	+	orf19.2078	75534	77752	1	75534	77752	75598	77607		orf19.9625|IPF25237.1|IPF1194.2|Contig4-3072_0031|orf6.7477|CA4819|APM2|CaO19.2078|CaO19.9625|IPF1194	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	78045	80744	+	orf19.2077	78045	80744	1	78045	80744	78128	80632		ZCF9|orf19.9624|IPF25229.1|IPF1196.2|Contig4-3072_0028|orf6.7478|CA4820|CaO19.9624|CaO19.2077|IPF1196	Putative transcription factor with zinc cluster DNA-binding motif; hypersensitive to toxic ergosterol analog ECC69 and/or ECC1384 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	80810	82010	+	orf19.2076	80810	82010	1	80810	82010	80950	81954		orf19.9623|IPF25282.1|IPF1197.1|Contig4-3072_0026|orf6.7479|CA4821|CaO19.9623|CaO19.2076|IPF1197	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	82648	84294	+	orf19.2075	82648	84294	1	82648	84294	82837	84192	DFG5	orf19.9622|IPF25260.1|IPF1199.1|Contig4-3072_0022|orf6.7480|CA4822|CaO19.2075|CaO19.9622	N-linked mannoprotein of cell wall and membrane; possible signal transducer; role in hyphal growth and HWP1 induction in alkaline pH; GPI modification predicted; dfg5 dcw1 double mutant is inviable; caspofungin-induced, fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	84527	84835	+	orf19.2074	84527	84835	1	84527	84835	84527	84835		orf19.9621|IPF25336.1|IPF29235.1|orf6.7481|CaO19.2074|CaO19.9621	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	84814	86806	+	orf19.2073	84814	86806	1	84814	86806	84814	86646		orf19.9620|IPF25244.1|IPF1203.2|Contig4-3072_0021|orf6.7482|CA4823|CaO19.2073|MTE2|CaO19.9620|ERC3	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	87382	87528	-	ntar_290	87382	87528	1	87528	87382					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	87820	89457	-	ntar_291	87820	89457	1	89457	87820	88514	88335			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	87933	89642	+	orf19.2072	87933	89642	1	87933	89642	87933	89642		orf19.9619|IPF25249.1|IPF1204.2|Contig4-3072_0019|orf6.7483|CA4824|HNM2|CaO19.2072|HNM1|CaO19.9619	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	89866	90342	+	orf19.2071	89866	90342	1	89866	90342	89866	90342		orf19.9618|IPF25310.1|IPF1205.2|Contig4-3072_0017|orf6.7484|CA4825|CaO19.9618|CaO19.2071|IPF1205	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	90606	92568	+	orf19.2070	90606	92568	2	90606|90759	90685|92568	90652	92431		orf19.9617|IPF25250.1|IPF1206.2|Contig4-3072_0015|orf6.7485|CA4826|CaO19.2070|CaO19.9617|IPF1206	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	92489	94278	-	orf19.2069	92489	94278	1	94278	92489	94103	92559	SMF3	orf19.9616|IPF25259.1|IPF1207.1|SMF2|Contig4-3072_0013|Contig4-3072_0014|orf6.7486|CA4827|CaO19.9616|CaO19.2069	Protein described as vacuolar iron transporter; alkaline upregulated; caspofungin repressed; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	95078	96770	+	orf19.2068	95078	96770	1	95078	96770	95127	96707		orf19.9615|IPF25256.1|IPF1209.2|Contig4-3072_0010|orf6.7487|CA4828|CaO19.9615|CaO19.2068|IPF1209	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	96451	97580	-	orf19.2067	96451	97580	1	97580	96451	97528	96815		orf19.9614|IPF25292.1|IPF1210.1|Contig4-3072_0008|orf6.7488|CA4829|CaO19.2067|NFU1|CaO19.9614|IPF1210	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	97671	98414	-	orf19.2066.1	97671	98414	2	98414|98093	98351|97671	98414	97963		CA4830|ATP8|ATP8.exon2|IPF1211.1	Predicted ORF in Assembly 20 and 21; gene has intron [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	98524	99589	-	orf19.2066	98524	99589	1	99589	98524	99589	98618		orf19.9613|IPF25283.1|IPF1212.1|Contig4-3072_0006|orf6.7489|CA4831|CaO19.9613|CaO19.2066|IPF1212	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	99694	100768	-	orf19.2065	99694	100768	1	100768	99694	100722	99694		orf19.9612|IPF25281.1|IPF1213.1|Contig4-3072_0005|orf6.7490|CA4832|CaO19.2065|DAL2|CaO19.9612	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	101403	104787	+	orf19.2064	101403	104787	1	101403	104787	101403	104726		orf19.9611|IPF25337.1|IPF1216.2|Contig4-3072_0003|Contig4-3072_0004|CA4833|CaO19.9611|CaO19.2064|IPF1216|orf6.7491	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	104710	104929	-	ntar_292	104710	104929	1	104929	104710					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	105012	108607	+	orf19.2063	105012	108607	1	105012	108607	105012	108482		orf19.9610|IPF25329.1|IPF1217.2|Contig4-3065_0035|orf6.7492|CA4834|CaO19.9610|CaO19.2063|IPF1217	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	108613	109734	-	orf19.2062	108613	109734	1	109734	108613	109376	108678	SOD4	orf19.9609|PGA2|IPF25297.1|IPF1218.1|Contig4-3065_0001|orf6.7493|CA4835|SOD32|CaO19.9609|CaO19.2062|IPF1218	Copper- and zinc-containing superoxide dismutase; role in response to host innate immune ROS; regulated on white-opaque switching; ciclopirox olamine induced; caspofungin repressed; member of family that includes SOD1, SOD4, SOD5, and SOD6 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	109843	110009	-	ntar_293	109843	110009	1	110009	109843					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	110767	111087	-	orf19.2061	110767	111087	1	111087	110767	111087	110767		orf19.9608|IPF25332.1|IPF29231.1|orf6.7494|CaO19.9608|CaO19.2061	Protein not essential for viability [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	111141	112295	-	orf19.2060	111141	112295	1	112295	111141	112012	111326	SOD5	orf19.9607|PGA3|orf6.7495|IPF1222|IPF25296.1|IPF1222.2|Contig4-3065_0005|CA4836|CaO19.2060|SOD31|CaO19.9607	Copper- and zinc-containing superoxide dismutase; protective role against oxidative stress; induced by neutrophil contact, hyphal growth, caspofungin, osmotic or oxidative stress; member of a gene family including SOD1, SOD4, SOD5, and SOD6 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	114738	116177	+	orf19.2059	114738	116177	1	114738	116177	115265	116176		orf19.9606|IPF25287.1|IPF1228.2|Contig4-3065_0008|orf6.7496|CA4837|CaO19.2059|EEP2|CaO19.9606|IPF1228	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	116667	119759	+	orf19.2057	116667	119759	1	116667	119759	117048	119588		orf19.9604|IPF25224.1|IPF1231.2|Contig4-3065_0009|orf6.7498|CA4838|CaO19.9604|YTA12|CaO19.2057	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	119781	121280	+	orf19.2055	119781	121280	1	119781	121280	119825	121174	NPL6	orf19.9602|IPF25269.1|IPF1234.2|Contig4-3065_0011|orf6.7500|CA4839|CaO19.9602|CaO19.2055	Putative nuclear protein localization factor; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	121116	122933	-	orf19.2054	121116	122933	1	122933	121116	122850	121294	FGR15	orf19.9601|IPF25258.1|IPF1235.1|Contig4-3065_0012|orf6.7501|CAS2|CA4840|CaO19.2054|CaO19.9601|IPF1235	Putative transcription factor with zinc finger DNA-binding motif; lacks an ortholog in S. cerevisiae; transposon mutation affects filamentous growth; caspofungin induced; mutation causes marginal increase in caspofungin sensitivity [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	123612	126920	-	orf19.2051	123612	126920	2	126920|126569	126783|123612	126818	123717		orf19.9599|IPF25219.1|IPF29223.1|IPF7466.3|Contig4-3065_0015|orf6.431|orf6.5990|CA3659|orf19.2053|IPF7466|CA0077|IPF1239|IPF1239.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=D]
Ca21chr2	127053	128867	-	orf19.2050	127053	128867	1	128867	127053	128755	127133		orf19.9598|IPF25254.1|IPF7463.2|Contig4-3065_0016|Contig4-3065_0018|orf6.5989|CA3658|TGL1|CaO19.2050|CaO19.9598	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	129828	131079	+	orf19.2049	129828	131079	1	129828	131079	130098	130952		orf19.9597|IPF25289.1|IPF7459.1|Contig4-3065_0021|orf6.5988|CA3657|CaO19.2049|CaO19.9597|IPF7459	Predicted ORF in Assemblies 19, 20 and 21; heterozygous null mutant displays sensitivity to virgineone [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	130886	131602	-	orf19.2048	130886	131602	1	131602	130886	131488	131123		orf19.9596|orf6.5987|IPF25325.1|IPF7458.1|Contig4-3065_0023|CaO19.2048|CaO19.9596	Transcription is positively regulated by Sfu1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	132108	132996	+	orf19.2047	132108	132996	1	132108	132996	132181	132807		orf19.9595|IPF25302.1|IPF7456.1|Contig4-3065_0024|orf6.5986|CA3656|CaO19.9595|CaO19.2047|IPF7456	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog, and to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	133145	134542	+	orf19.2046	133145	134542	1	133145	134542	133198	134379	POT1-2	orf19.9594|IPF25275.1|IPF7453.1|Contig4-3065_0025|orf6.5985|CA3655|CaO19.9594|POT98|CaO19.2046|POT13	Putative peroxisomal 3-ketoacyl CoA thiolase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	134429	135817	-	orf19.2045	134429	135817	1	135817	134429	135647	134610		orf19.9593|IPF25276.1|IPF7452.1|Contig4-3065_0027|orf6.5984|CA3654|CaO19.9593|CaO19.2045|IPF7452	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	136057	137714	-	orf19.2044	136057	137714	1	137714	136057	137649	136192	PGA27	orf19.9592|IPF25252.1|IPF7451.2|Contig4-3065_0030|orf6.5983|CA3653|CaO19.9592|CaO19.2044|IPF7451	Putative GPI-anchored protein of unknown function [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	137787	138841	-	orf19.2043	137787	138841	1	138841	137787	138754	137852		orf19.9591|IPF25285.1|IPF7450.2|Contig4-3065_0032|orf6.5982|CA3652|CaO19.9591|CaO19.2043|NBP35	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	138800	140513	+	orf19.2042	138800	140513	1	138800	140513	138814	140403		orf19.9590|IPF25257.1|IPF7447.2|Contig4-3065_0033|orf6.5981|CA3651|CaO19.9590|MSS1|CaO19.2042	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	140374	142541	-	orf19.2041	140374	142541	1	142541	140374	142396	140486		orf19.9589|IPF25241.1|IPF4134.2|Contig4-2863_0027|orf6.5980|CA3650|RSC4|CaO19.2041|CaO19.9589|IPF4134	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	142571	144665	+	orf19.2040	142571	144665	1	142571	144665	142787	144562		orf19.9588|IPF25245.1|IPF4132.2|Contig4-2863_0024|orf6.5979|CA3649|TAH18|CaO19.9588|CaO19.2040|IPF4132	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	144759	146262	+	orf19.2039	144759	146262	1	144759	146262	144775	146115	MSF1	orf19.9587|IPF25267.1|IPF4131.2|Contig4-2863_0020|Contig4-2863_0021|orf6.5978|CA3648|CaO19.2039|CaO19.9587	Predicted ORF in Assemblies 19, 20 and 21; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	146097	147513	-	orf19.2038	146097	147513	1	147513	146097	147409	146153		orf19.9586|IPF25271.1|IPF4129.1|Contig4-2863_0018|Contig4-2863_0019|orf6.5977|CA3647|CaO19.9586|CaO19.2038|IPF4129	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	148469	149248	+	orf19.2037	148469	149248	1	148469	149248	148538	148996		orf19.9585|IPF25312.1|IPF4128.1|orf6.5976|CA3646|CaO19.2037|CaO19.9585|IPF4128	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	148490	149220	-	ntar_294	148490	149220	1	149220	148490					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	149554	150713	+	orf19.2036	149554	150713	1	149554	150713	149634	150713		orf19.9584|IPF25277.1|IPF4127.2|Contig4-2863_0014|orf6.5975|CA3645|CaO19.9584|DDD1|CaO19.2036|IPF4127	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	150855	151811	+	orf19.2035	150855	151811	1	150855	151811	150855	151811		orf19.9583|IPF25280.1|IPF4126.2|Contig4-2863_0013|orf6.5974|CA3644|CaO19.2035|CaO19.9583|IPF4126	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	152021	152710	+	orf19.2034	152021	152710	1	152021	152710	152021	152710		orf19.9582|IPF25300.1|IPF4124.2|Contig4-2863_0011|orf6.5973|CA3643|CaO19.2034|CaO19.9582|IPF4124	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	152920	153609	+	orf19.2033	152920	153609	1	152920	153609	152920	153609	PGA19	orf19.9581|IPF4123|IPF25299.1|IPF4123.2|Contig4-2863_0009|orf6.5972|CA3642|CaO19.9581|CaO19.2033	[NOT TRANSCRIBED?] Putative GPI-anchored protein; not essential for viability; macrophage-induced gene [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	153706	155386	-	orf19.2031	153706	155386	2	155386|155150	155222|153706	155269	154527	VPS24	orf19.9579|IPF19223.2|IPF4120.2|Contig4-2863_0003|orf6.595|orf6.5970|CA3640|CaO19.2031	Protein similar to S. cerevisiae Vps24p, which is a member of the ESCRT III protein sorting complex; downregulated upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	153805	154473	+	orf19.2032	153805	154473	1	153805	154473	153805	154473		orf19.9580|IPF25298.1|IPF4122.2|Contig4-2863_0008|orf6.5971|CA3641|CaO19.2032|CaO19.9580|IPF4122	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	155665	156671	+	orf19.2030	155665	156671	1	155665	156671	155824	156297		orf19.9578|IPF4119.2|IPF29221.1|Contig4-2863_0002|orf6.594|orf6.5969|CA0125|CaO19.2030|IPF4119	Predicted ORF in Assemblies 19, 20 and 21; greater mRNA abundance observed in a cyr1 or ras1 homozygous null mutant than in wild type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	156208	157488	-	orf19.2029	156208	157488	1	157488	156208	157441	156353	RFC5	orf19.9577|IPF4118.2|IPF29218.1|Contig4-2863_0001|orf6.593|orf6.5968|CA0124|CaO19.2029	Predicted ORF in Assemblies 19, 20 and 21; periodic mRNA expression, peak at cell-cycle G1/S phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	157550	157811	+	ntar_295	157550	157811	1	157550	157811	157655	157795			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	157654	158482	-	orf19.2028	157654	158482	1	158482	157654	158430	157873	MXR1	orf19.9576|IPF4117.2|IPF19262.2|Contig4-2097_0002|orf6.473|orf6.592|CA0123|CaO19.2028	Protein described as a methionine sulfoxide reductase; flucytosine induced; Plc1p-regulated; upregulated in the presence of human neutrophils; macrophage regulated (gene induced, protein decreased); possibly adherence-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	158583	161074	-	orf19.2026	158583	161074	1	161074	158583	160795	158693		orf19.9575|IPF19018.2|IPF4114.2|Contig4-2097_0005|orf6.1213|orf6.471|orf6.591|CA0090|CaO19.2026|UBP9|UBP13	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	161361	161705	+	orf19.2025	161361	161705	1	161361	161705	161361	161705		IPF29232.1|orf6.470|CaO19.2025	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	161906	162762	-	ntar_296	161906	162762	1	162762	161906	162735	162592			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	163117	163552	+	orf19.2024	163117	163552	1	163117	163552	163117	163476		IPF25333.1|IPF29228.1|orf6.2375|orf6.1212	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	164442	166287	+	orf19.2023	164442	166287	1	164442	166287	164467	166107	HGT7	orf19.9572|HXT3|HXT62|IPF3282|HXT61|IPF17561.3|IPF4109.2|Contig4-2603_0002|orf6.1210|orf6.2376|orf6.2378|CA1067|CaO19.2023	Putative glucose transporter, major facilitator superfamily; glucose-, fluconazole-, Snf3p-induced, expressed at high glucose; upregulated in biofilm; C. albicans glucose transporter family comprises 20 members; 12 TM regions predicted [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	167154	169147	+	orf19.2021	167154	169147	1	167154	169147	167291	168943	HGT8	orf19.9571|HGT11|HXT3|HXT7|HXT4|IPF18773.1|IPF18774.1|orf6.187|orf6.2377|orf6.2378|HXT5|CA1069|CA1068|orf19.2022|HXT5.3f	Putative glucose transporter of the major facilitator superfamily; the C. albicans glucose transporter family comprises 20 members; 12 probable membrane-spanning segments; gene has intron; expressed in rich medium with 2% glucose [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	170134	171951	+	orf19.2020	170134	171951	1	170134	171951	170217	171869	HGT6	orf19.9570|HXT4|HXT61|IPF25253.1|IPF4104.2|Contig4-2305_0001|orf6.2379|CA1070|CaO19.2020|HXT63|CaO19.9570	Putative glucose transporter of major facilitator superfamily; 20 members of C. albicans glucose transporter family; 12 probable membrane-spanning segments; core stress response, fluconazole-induced; expressed in rich medium with 2% glucose [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	172312	173077	+	orf19.2019	172312	173077	1	172312	173077	172345	172986		orf19.9569|IPF4102.2|IPF19890.2|Contig4-2305_0004|orf6.2113|orf6.2380|CA0910|MRPL16|CaO19.2019	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	173109	173561	+	orf19.2018.1	173109	173561	2	173109|173409	173350|173561	173155	173527			Predicted ORF in Assembly 20 and 21; gene has intron; similar to human BLOC1S2 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	173355	174486	-	orf19.2018	173355	174486	1	174486	173355	174401	173952		orf19.9568|IPF14814.2|IPF18772.2|Contig4-1775_0003|orf6.2114|orf6.2381|CA0911|CaO19.2018|JJJ3|IPF14814	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	173688	173945	+	orf19.2018.2	173688	173945	1	173688	173945	173688	173945			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	174461	175850	+	orf19.2017	174461	175850	1	174461	175850	174599	175780		orf19.9567|IPF14813.2|IPF14812.3|Contig4-1775_0004|Contig4-1775_0006|orf6.2115|CA0912|CaO19.9567|RPA49|CaO19.2017	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	175924	176042	-	tl(caa)2	175924	176042	2	176042|175967	176004|175924				tL(CAA)2.2	tRNA-Leu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	176331	176990	-	orf19.2016	176331	176990	1	176990	176331	176936	176520		orf19.9566|IPF14810.2|IPF29222.1|orf6.2116|CA0913|CaO19.9566|CaO19.2016|IPF14810	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	177194	177851	-	ntar_297	177194	177851	1	177851	177194					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	178024	178323	+	ntar_298	178024	178323	1	178024	178323					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	178038	179719	-	orf19.2014	178038	179719	1	179719	178038	179692	178316	BCY1	orf19.9565|SRA1|orf6.573|orf6.2117|IPF19590.1|IPF19228.1|IPF19591.1|Contig4-2036_0005|Contig4-2036_0006|orf6.574|CA0914|orf19.2015	Regulatory subunit of protein kinase A; required for nuclear localization of Tpk1p; physically interacts with Tpk1p; essential for viability; apoptosis-regulated; bcy1 heterozygous or bcy1 tpk2 mutant has filamentous growth defect [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	180115	180254	-	ntar_299	180115	180254	1	180254	180115					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	180729	182965	+	orf19.2013	180729	182965	1	180729	182965	180800	182863	KAR2	orf19.9564|orf6.572|IPF15827.2|IPF19229.2|Contig4-1979_0005|orf6.2118|orf6.779|CA0915|CaO19.2013	Similar to chaperones of Hsp70p family; transcriptionally regulated by iron; expression greater in high iron; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	183402	185926	+	orf19.2012	183402	185926	2	183402|183563	183424|185926	183402	185876	NOT3	orf19.9563|IPF18023.2|IPF15994.2|Contig4-1979_0003|Contig4-1979_0004|orf6.6349|orf6.778|CA0181|NOT31|CaO19.2012	Protein with similarity to Not5p, putative transcriptional regulator; not required for adherence to buccal epithelial cells or for virulence in mouse systemic infection; null mutant colonies exhibit slightly decreased filamentation ratio [label_first_exon=CGD label_last_exon=CGDmod orf_changed=true scenario_first_exon=Z scenario_last_exon=A]
Ca21chr2	185888	186283	-	orf19.2010	185888	186283	1	186283	185888	186283	185888		orf19.9561|IPF20150.1|IPF20049.1|Contig4-1979_0001|orf6.6350|orf6.776|CA3932|CaO19.2010|IPF20150	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	186639	188159	+	orf19.2009	186639	188159	1	186639	188159	186664	188064		orf19.9560|IPF18281.1|IPF15997.3|Contig4-1590_0004|orf6.6351|orf6.775|CA3933|PEX12|CaO19.2009|IPF18281	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	188291	189621	+	orf19.2008	188291	189621	1	188291	189621	188354	189604		orf19.9559|IPF25272.1|IPF17119.2|Contig4-1590_0001|Contig4-1590_0002|orf6.6352|CA3934|CaO19.9559|CaO19.2008|IPF17119	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	189570	192698	-	orf19.2007	189570	192698	1	192698	189570	192622	189686		orf19.9558|IPF25347.1|IPF14688.2|Contig4-2862_0002|orf6.6353|CA3935|CaO19.2007|LUV1|CaO19.9558|IPF14688	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	192779	193693	+	orf19.2006.1	192779	193693	1	192779	193693	193378	193563	COX17	IPF25343.1|IPF14687.1|Contig4-2862_0004|CA3936	ORF predicted by Annotation Working Group; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	193688	194888	-	orf19.2006	193688	194888	1	194888	193688	194750	193728		orf19.9557|IPF14686.2|IPF29219.1|Contig4-2862_0005|orf6.6354|CA3937|CaO19.2006|IPF14686	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	195233	198938	-	orf19.2005	195233	198938	1	198938	195233	198415	195380	REG1	orf19.9556|IPF4764.2|IPF29238.1|Contig4-2862_0007|orf6.6355|CA3938|CaO19.2005|IPF4764	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-induced; possibly transcriptionally regulated upon hyphal formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	199107	199588	-	ntar_300	199107	199588	1	199588	199107					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	199625	199984	+	ntar_301	199625	199984	1	199625	199984					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	200554	201372	+	ntar_302	200554	201372	1	200554	201372	200873	201013			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	201247	203176	-	orf19.2003	201247	203176	1	203176	201247	203088	201472	HNM1	orf19.9554|IPF4757.1|IPF19469.2|Contig4-2862_0011|orf6.42|orf6.6357|CA3939|HNM2|CaO19.2003	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog; shows colony morphology-related gene regulation by Ssn6p; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	204059	204638	-	ntar_303	204059	204638	1	204638	204059					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	204783	207947	+	orf19.2002	204783	207947	1	204783	207947	204929	207811		orf19.9553|IPF4755.2|IPF29205.1|Contig4-1886_0001|orf6.6358|CA3940|NIC96|CaO19.2002	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	207964	208946	+	orf19.2001	207964	208946	1	207964	208946	208043	208798		orf19.9552|IPF25291.1|IPF4754.2|orf6.6359|CA3941|CaO19.9552|CaO19.2001|IPF4754	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	208761	211371	-	orf19.2000	208761	211371	1	211371	208761	211319	208791		orf19.9551|IPF25226.1|IPF4753.2|Contig4-2876_0001|orf6.6360|CA3942|CHL1|CaO19.2000|CaO19.9551	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	211479	212185	+	orf19.1999	211479	212185	1	211479	212185	211535	212116		orf19.9550|IPF18279.2|IPF4751.2|Contig4-2876_0002|orf6.6361|CA3943|CaO19.9550|CaO19.1999|IPF4751	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	212169	214784	-	ntar_1416	212169	214784	2	214784|214517	214632|212169	212479	212273			 [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	212374	214693	+	orf19.1998	212374	214693	1	212374	214693	212498	214615		orf19.9549|IPF25233.1|IPF4750.1|Contig4-2876_0006|orf6.6362|CA3944|CaO19.1998|CaO19.9549|IPF4750	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	215370	216684	+	orf19.1996	215370	216684	1	215370	216684	215567	216628	CHA1	orf19.9548|orf6.6363|19.9548|CHA2|IPF4749.2|IPF8165.3|IPF29220.1|Contig4-2876_0008|orf6.766|CA3945|CA6267|orf19.1997|CHA12.3f|CHA12	Protein similar to serine/threonine dehydratases, catabolic; negatively regulated by Rim101p; expression greater in low iron; regulated on white-opaque switching; filament induced; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	216930	217045	-	tl(uaa)1	216930	217045	2	217045|216975	217007|216930				tL(UAA)1.2	tRNA-Leu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	217357	218462	-	ntar_304	217357	218462	1	218462	217357	217909	217745			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	217654	218064	+	ntar_305	217654	218064	1	217654	218064	217748	217873			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	218454	218785	+	ntar_306	218454	218785	1	218454	218785					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	218802	218978	-	ntar_307	218802	218978	1	218978	218802					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	219235	221605	-	orf19.1995	219235	221605	1	221605	219235	221449	219320		orf19.9547|IPF4742.2|IPF17173.3|Contig4-2500_0005|Contig4-2500_0006|orf6.6364|orf6.767|CA3946|MNN22|CaO19.1995|MNN2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	222154	222616	+	ntar_308	222154	222616	1	222154	222616	222154	222288			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	222621	223247	-	ntar_309	222621	223247	1	223247	222621					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	223477	225692	+	orf19.1994	223477	225692	1	223477	225692	223605	225650		orf19.9546|IPF25236.1|IPF14768.2|Contig4-2198_0005|orf6.6365|CA3947|CaO19.9546|SNX41|CaO19.1994|IPF14768	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	225952	227504	+	orf19.1993	225952	227504	1	225952	227504	226005	227255		orf19.9545|IPF25273.1|IPF14766.2|Contig4-2198_0009|orf6.6366|CA3948|RPN9|CaO19.1993|CaO19.9545	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	227543	229233	-	orf19.1992	227543	229233	1	229233	227543	229131	227572	SIR2	orf19.9544|IPF17303.2|IPF18997.2|orf6.6367|CA3949|SIR21|CaO19.1992	Required for wild-type lifespan, asymmetric inheritance of oxidatively damaged proteins, rDNA silencing; regulates phenotypic switching in strain 3153A, not WO-1; partially functionally complements S. cerevisiae sir2 mutant mating defect [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	230312	232374	+	orf19.1991	230312	232374	1	230312	232374	230378	232237		orf19.9542|IPF19793.1|IPF16743.2|Contig4-1687_0002|orf6.1291|orf6.6369|CA3950|CaO19.1991|PTM1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	232328	234628	-	orf19.1990	232328	234628	1	234628	232328	234442	232550	SNX4	orf19.9541|IPF25265.1|IPF15225.2|Contig4-2093_0003|Contig4-2093_0004|orf6.1292|orf6.6370|CA0402|CaO19.1990|IPF15225	Protein induced during the mating process [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	234866	236465	-	orf19.1989	234866	236465	1	236465	234866	236395	235037	DCW1	orf19.9540|PGA51|IPF25268.1|IPF15224.2|Contig4-2093_0006|orf6.1293|CA0403|CaO19.1989|CaO19.9540|IPF15224	Protein with predicted GPI modification; dfg5 dcw1 double mutant is inviable; not required for wild-type hyphal growth; increased mRNA abundance observed in cyr1 homozygous null mutant (yeast-form or hyphal); fungal-specific [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	237124	239457	-	orf19.1441	237124	239457	1	239457	237124	239103	237247		orf19.9016|IPF25761.1|IPF14657.2|Contig4-2134_0003|orf6.1060|CA0284|CaO19.9016|CaO19.1441|IPF14657	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	241096	243457	+	orf19.1442	241096	243457	1	241096	243457	241143	243251	PLB4.5	orf19.9017|orf19.9018|IPF15731.2|IPF15733.2|IPF14660.3|IPF29416.1|PLB4.3|Contig4-2174_0003|Contig4-2174_0004|orf6.1059|orf6.795|orf6.796|PLB4|PLB4.5f|PLB4.3f|CA0185|CA0186|orf19.1443	Putative phospholipase B; Hog1p-induced; regulated by Ssn6p; putative GPI-anchor; repressed during cell wall regeneration; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	243876	245733	+	orf19.1444	243876	245733	1	243876	245733	244023	245591		orf19.9019|IPF17555.3|IPF29409.1|Contig4-2174_0001|orf6.7129|CA4555|ENT2|CaO19.1444|CA0187|IPF15734|IPF15734.1|IPF17555.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	245742	248619	-	orf19.1445	245742	248619	1	248619	245742	248531	245820	ESC4	orf19.9020|IPF25740.1|IPF7874.2|Contig4-3018_0027|Contig4-3018_0028|orf6.7128|CA4554|CaO19.9020|CaO19.1445|IPF7874	Protein similar to S. cerevisiae Esc4p, which represses transposition; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	248807	251617	-	orf19.1446	248807	251617	1	251617	248807	250508	249030	CLB2	orf19.9021|IPF25776.1|IPF7873.2|CYB1|Contig4-3018_0026|orf6.7127|CA4553|CaO19.9021|CaO19.1446	B-type mitotic cyclin (cyclin-dependent protein kinase regulatory subunit); essential; required for wild-type mitotic exit; role in cell polarization; interacts with catalytic subunit Cdk1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	252317	252519	-	ntar_310	252317	252519	1	252519	252317	252484	252341			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	253735	253869	+	ntar_311	253735	253869	1	253735	253869					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	254298	256293	-	orf19.1447	254298	256293	1	256293	254298	256196	254580		orf19.9022|IPF25767.1|IPF7869.1|Contig4-3018_0021|orf6.7126|CA4552|CaO19.1447|CaO19.9022|IPF7869	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	256675	257518	+	orf19.1448	256675	257518	1	256675	257518	256733	257299	APT1	orf19.9023|IPF25817.1|IPF7867.1|Contig4-3018_0020|orf6.7125|CA4551|CaO19.9023|CaO19.1448	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced; repressed by nitric oxide; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	257328	257905	-	orf19.1448.1	257328	257905	2	257905|257694	257824|257328	257845	257441			Predicted ORF in Assembly 20 and 21; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	258078	258780	-	orf19.1449	258078	258780	1	258780	258078	258767	258078		orf19.9024|IPF25807.1|IPF7863.1|IPF7863|Contig4-3018_0017|orf6.7124|CA4549|CaO19.1449|CaO19.9024	Increased transcription is observed in an azole-resistant strain that overexpresses MDR1; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr2	259049	260155	-	orf19.1450	259049	260155	1	260155	259049	260155	259049			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	260740	265822	+	orf19.1451	260740	265822	1	260740	265822	260784	265781	SRB9	orf19.9026|IPF25829.1|IPF6242.2|Contig4-3018_0009|Contig4-3018_0011|Contig4-3018_0012|Contig4-3018_0014|orf6.7122|CA4547|orf6.514|CaO19.9026|SSN2|CaO19.1451	Protein with similarity to S. cerevisiae Srb9p transcription mediator; transposon mutation affects filamentous growth; suppresses S. cerevisiae diploid filamentous (flo8, ste7, ste12, tec1) or haploid invasive (flo8) mutant growth defects [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	265918	268971	+	orf19.1453	265918	268971	1	265918	268971	265953	268823	SPT5	orf19.9028|IPF25736.1|IPF6247.1|Contig4-3018_0007|orf6.7120|CA4546|CaO19.9028|CaO19.1453	Protein similar to S. cerevisiae Spt5p transcription elongation factor; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	268825	270558	-	orf19.1457	268825	270558	1	270558	268825	270508	268985		orf19.9032|IPF25773.1|IPF6250.1|Contig4-3018_0004|orf6.7116|CA4545|CaO19.9032|SSL1|CaO19.1457	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	270261	270695	+	orf19.1456	270261	270695	1	270261	270695	270261	270695			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	270671	271572	-	orf19.1458	270671	271572	1	271572	270671	271542	270697		orf19.9033|IPF25800.1|IPF6252.1|Contig4-3018_0001|orf6.7115|CA4544|CaO19.1458|TAD2|CaO19.9033|IPF6252	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	271655	272881	+	orf19.1459	271655	272881	1	271655	272881	271750	272832	PPE1	orf19.9034|IPF25793.1|IPF6254.1|orf6.7114|CA4543|CaO19.9034|CaO19.1459	Protein similar to S. cerevisiae Ppe1p; shows genetic interaction with some genes involved in diploid filamentous growth and haploid invasive growth in S. cerevisiae [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	272822	275138	-	orf19.1460	272822	275138	1	275138	272822	275001	272857		orf19.9035|IPF25753.1|IPF6255.1|Contig4-2555_0007|orf6.7113|CA4542|CaO19.9035|CaO19.1460|IPF6255	Putative glutamine-dependent NAD synthetase, involved in NAD salvage pathway [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	275432	276770	+	orf19.1461	275432	276770	1	275432	276770	275494	276735		orf19.9036|IPF25785.1|IPF6257.1|Contig4-2555_0005|orf6.7112|CA4541|CaO19.9036|CaO19.1461|IPF6257	Predicted ORF in Assemblies 19, 20 and 21; possibly transcriptionally regulated upon hyphal formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	277000	279604	+	orf19.1462	277000	279604	1	277000	279604	277127	279472	SMP2	orf19.9037|IPF25747.1|IPF6259.2|Contig4-2555_0003|orf6.7111|CA4540|CaO19.1462|CaO19.9037	Transcription is regulated by Nrg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	279905	282156	+	orf19.1464	279905	282156	1	279905	282156	280251	282089	BMT5	orf19.9039|IPF18203.2|IPF6260.2|orf6.7109|CA4539|CaO19.1464|WRY6|CaO19.9039|IFQ4	Putative beta-mannosyltransferase, member of a 9-gene family that includes characterized genes BMT1, BMT2, BMT3, and BMT4 with roles in beta-1,2-mannosylation of cell wall phosphopeptidomannan; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	282310	283037	+	orf19.1465	282310	283037	1	282310	283037	282314	282859		orf19.9040|IPF25815.1|IPF20018.1|Contig4-3015_0023|Contig4-3015_0024|orf6.7108|CA4538|CaO19.9040|PAA12|CaO19.1465|IPF20018	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	283089	283942	+	orf19.1466	283089	283942	1	283089	283942	283107	283874	REX2	orf19.9041|IPF25805.1|IPF4375.1|Contig4-3015_0021|orf6.7107|CA4537|REX20|CaO19.9041|CaO19.1466|YNT2	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	284175	284945	+	orf19.1467	284175	284945	1	284175	284945	284229	284633	COX13	orf19.9042|IPF25830.1|IPF4376.1|Contig4-3015_0020|orf6.7106|CA4536|CaO19.9042|CaO19.1467	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	284750	287106	-	orf19.1468	284750	287106	1	287106	284750	286599	285040		orf19.9043|IPF25772.1|IPF4377.1|Contig4-3015_0018|orf6.7105|CA4535|CDC55|CaO19.1468|CaO19.9043	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	287700	288745	-	orf19.1470	287700	288745	2	288745|288234	288639|287700	288228	287869	RPS26A	orf19.9045|IPF25866.1|IPF4380.2|Contig4-3015_0015|orf6.7103|CA4534|CaO19.1470|RPS26|CaO19.9045	Predicted ribosomal protein; regulated by Nrg1p, Tup1p; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	289048	289246	-	ntar_312	289048	289246	1	289246	289048					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	289361	290754	+	orf19.1471	289361	290754	2	289361|289895	289574|290754	289905	290378	COX4	orf19.9046|IPF25835.1|IPF20017.1|Contig4-3015_0013|orf6.7102|CA4533|CaO19.9046|CaO19.1471	Protein described as subunit IV of cytochrome c oxidase; transcription is regulated by Mig1p; macrophage/pseudohyphal-induced gene; macrophage-induced protein; repressed by nitric oxide: intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	291061	292250	+	orf19.1473	291061	292250	1	291061	292250	291132	292226		orf19.9048|IPF25790.1|IPF4386.1|Contig4-3015_0011|orf6.7100|CA4532|CaO19.1473|CaO19.9048|IPF4386	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	292450	296359	+	orf19.1474	292450	296359	1	292450	296359	292480	296253	SLA1	orf19.9049|IPF25863.1|IPF4392.1|Contig4-3015_0009|orf6.7099|CA4531|CaO19.9049|CaO19.1474	Predicted ORF in Assemblies 19, 20 and 21; transcription is regulated by Nrg1p and Mig1p; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	296573	298204	+	orf19.1476	296573	298204	1	296573	298204	296573	298204		orf19.9051|IPF25770.1|IPF4394.1|Contig4-3015_0008|orf6.7097|CA4530|IME4|CaO19.9051|CaO19.1476	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	297970	298931	-	orf19.1477	297970	298931	1	298931	297970	298785	298207		orf19.9052|IPF25812.1|IPF4395.1|Contig4-3015_0007|orf6.7096|CA4529|CaO19.9052|CaO19.1477|IPF4395	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	298964	301526	-	orf19.1478	298964	301526	1	301526	298964	301509	299254		orf19.9053|IPF25749.1|IPF4396.1|Contig4-3015_0004|Contig4-3015_0005|orf6.7095|CA4528|CaO19.1478|STT3|CaO19.9053	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	301748	304474	-	orf19.1479	301748	304474	1	304474	301748	304222	301880		orf19.9054|IPF4398.3|IPF29400.1|Contig4-3015_0002|orf6.2103|orf6.7094|CA4527|CaO19.1479|IPF4398|IPF4398.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	305429	306209	+	orf19.1480	305429	306209	1	305429	306209	305492	306022		orf19.9055|IPF25808.1|IPF4401.2|Contig4-2219_0007|orf6.2104|CA0903|CaO19.1480|CaO19.9055|IPF4401	Protein described as succinate dehydrogenase, enzyme of citric acid cycle; downregulated by Efg1p; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	306188	308965	-	orf19.1481	306188	308965	1	308965	306188	308924	306408	HAP42	orf19.9056|IPF25743.1|IPF4403.2|Contig4-2219_0003|Contig4-2219_0005|orf6.2105|CA0904|CaO19.1481|CaO19.9056|IPF4403	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	309613	310350	+	orf19.1482	309613	310350	1	309613	310350	309760	310080		orf19.9057|IPF25838.1|IPF4405.1|Contig4-2219_0002|orf6.2106|CA0905|CaO19.9057|CaO19.1482|IPF4405	Predicted ORF in Assemblies 19, 20 and 21; expression regulated during planktonic growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	310024	310685	-	orf19.1483	310024	310685	1	310685	310024	310614	310219		orf19.9058|IPF25853.1|IPF4406.2|Contig4-2219_0001|orf6.2107|CA0906|CaO19.9058|CaO19.1483|IPF4406	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	310743	311702	+	orf19.1484	310743	311702	1	310743	311702	310886	311644		orf19.9059|IPF25804.1|IPF19889.1|Contig4-2638_0001|orf6.2108|CA0907|CaO19.9059|CaO19.1484|IPF19889	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	311626	312247	-	orf19.1485	311626	312247	1	312247	311626	312166	311825		orf19.9060|IPF6016.2|Contig4-2638_0003|orf6.2109|CA0908|MRPL31|CaO19.9060|CaO19.1485	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	314224	315476	-	orf19.1486	314224	315476	1	315476	314224	315173	314676		orf19.9061|IPF6011.2|IPF6010.3|Contig4-2638_0008|orf6.2256|CA1000|CaO19.9061|CaO19.1486|IPF6011	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	316830	317209	-	ntar_313	316830	317209	1	317209	316830					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	322081	323268	-	orf19.1488	322081	323268	1	323268	322081	323268	322609		orf19.9065|IPF6006.2|IPF29419.1|Contig4-2801_0001|orf6.2260|CA1001|CaO19.1488|CaO19.9065|IPF6006	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	323401	323519	-	tl(caa)1	323401	323519	2	323519|323444	323481|323401				tL(CAA)1.2	tRNA-Leu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	327044	327316	+	ntar_314	327044	327316	1	327044	327316					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	327699	332303	+	orf19.1490	327699	332303	1	327699	332303	327699	331928	MSB2	orf19.9067|IPF25849.1|IPF6003.1|Contig4-2801_0007|orf6.2804|CA1345|CaO19.9067|CaO19.1490|IPF6003	Mucin family member, possible sensor of cell wall damage; required for Cek1p phosphorylation in response to cell wall stress; transcription is negatively regulated by Rim101p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	332538	332819	+	ntar_315	332538	332819	1	332538	332819	332542	332712			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	333010	333297	+	orf19.1490.1	333010	333297	1	333010	333297	333010	333297			Predicted ORF in retrotransposon Tca16 with similarity to the Gag-Pol region of retrotransposons; added to Assembly 21 based on comparative genome analysis; overlaps orf19.1490.2, which is annotated as blocked reading frame [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	334106	336093	-	orf19.1491	334106	336093	1	336093	334106	336020	334176		orf19.9068|IPF14405.2|IPF5991.3|Contig4-2801_0010|orf6.1460|orf6.2805|CA0492|CaO19.1491|SNU71	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	336175	338557	+	orf19.1492	336175	338557	1	336175	338557	336574	338541	PRP39	orf19.9069|IPF25748.1|IPF14401.2|Contig4-2358_0005|orf6.1461|CA0493|CA6189|PRP39.5f|CaO19.9069|CaO19.1492|PRP39.3f|PRP39.3	Putative component of the U1 snRNP, involved in splicing; ortholog of S. cerevisiae PRP39; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	338488	340616	-	orf19.1493	338488	340616	1	340616	338488	340557	338599	RAD7	orf19.9070|IPF14400.2|IPF16848.2|Contig4-2358_0001|orf6.1462|orf6.936|CA0494|CaO19.1493	Protein similar to S. cerevisiae Rad7p, which is a subunit of the Nucleotide Excision Repair Factor 4; induced under hydroxyurea treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	341120	342877	+	orf19.1494	341120	342877	2	341120|341491	341305|342877	341240	342678	RAD23	orf19.9071|IPF25788.1|IPF16846.2|Contig4-2358_0003|orf6.935|CA0231|CaO19.1494	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	342710	343698	-	orf19.1495	342710	343698	1	343698	342710	343631	342834		orf19.9072|IPF16638.1|IPF19099.1|Contig4-2358_0004|orf6.3546|orf6.934|CA1860|UTR4|CaO19.1495	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	343808	344435	+	ntar_316	343808	344435	1	343808	344435					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	343891	345349	-	orf19.1496	343891	345349	1	345349	343891	345349	343994		orf19.9073|IPF19614.1|IPF19615.1|orf6.933|orf6.3545|CA1859|CaO19.1496|IPF19614.3f|IPF19614	Putative transcription factor with zinc finger DNA-binding motif; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	345494	346830	-	orf19.1497	345494	346830	1	346830	345494	346606	345494		ZCF6|IPF19100.2|CA6255|CaO19.1497|IPF19614.5f	Putative transcription factor with zinc cluster DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr2	350120	354286	+	orf19.1499	350120	354286	1	350120	354286	350731	354165	CTF1	orf19.9075|IPF25868.1|IPF15240.2|Contig4-2582_0009|orf6.3543|CA6190|CaO19.9075|CaO19.1499|IPF15240	Putative zinc-finger transcription factor, similar to A. nidulans FarA and FarB; activates genes required for fatty acid degradation; induced by oleate; null mutant displays carbon source utilization defects and slightly reduced virulence [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	354220	355901	-	orf19.1500	354220	355901	1	355901	354220	355815	354292		orf19.9076|IPF15344.2|IPF15343.3|Contig4-2650_0016|orf6.3542|CA1858|CaO19.1500|IPF15344	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	356077	357425	+	orf19.1502	356077	357425	1	356077	357425	356131	356898		orf19.9078|IPF25801.1|IPF15345.3|Contig4-2650_0014|orf6.192|orf6.3540|CA0028|CaO19.1502|IPF15345|IPF15345.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	357258	360070	-	orf19.1504	357258	360070	1	360070	357258	359972	357411		orf19.9080|IPF15348.2|IPF29398.1|Contig4-2650_0011|orf6.193|orf6.3538|CA1857|CaO19.1504|IPF15348	Putative patatin-like phospholipase; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	360753	362170	-	orf19.1505	360753	362170	1	362170	360753	361937	360900		orf19.9081|IPF13689|IPF13689.2|IPF18995.2|Contig4-2650_0009|orf6.1309|orf6.3537|CA1856|CaO19.1505	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	364198	364623	-	orf19.1506	364198	364623	1	364623	364198	364623	364198			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	365004	367152	-	orf19.1507	365004	367152	1	367152	365004	367058	365082		orf19.9083|IPF25758.1|IPF17676.2|Contig4-1513_0004|Contig4-2650_0001|Contig4-2650_0018|orf6.1307|CA0411|CaO19.9083|AMN1|CaO19.1507|IPF17676	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	367250	367602	-	orf19.1508	367250	367602	1	367602	367250	367585	367250		IPF29448.1|orf6.1306|CaO19.1508	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr2	367329	367837	+	ntar_317	367329	367837	1	367329	367837					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	368671	369526	+	ntar_318	368671	369526	1	368671	369526					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	369834	373022	-	orf19.1509	369834	373022	1	373022	369834	372659	369888	ROD1	orf19.9084|IPF19576.1|IPF19577.1|Contig4-1782_0002|orf6.344|orf6.3960|CA2177|CaO19.1509	Protein not essential for viability; similar to S. cerevisiae Rod1p, which is a membrane protein with a role in drug tolerance; repressed by Rgt1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	374066	374427	+	ntar_319	374066	374427	1	374066	374427					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	374394	376731	-	orf19.1510	374394	376731	1	376731	374394	376459	374579		orf19.9085|IPF9282|IPF25762.1|IPF9282.2|Contig4-1782_0005|orf6.3961|CA2178|CaO19.9085|CaO19.1510	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	377896	386454	-	orf19.1513	377896	386454	1	386454	377896	385840	377966	FAB1	orf19.9088|IPF9288.2|IPF29418.1|Contig4-2754_0006|Contig4-2754_0007|Contig4-2754_0009|orf6.3964|CA2179|CaO19.1513	Phosphatidylinositol 3-phosphate 5-kinase; required for hyphal growth on solid media, and for wild-type vacuolar morphology and acidification; not required for wild-type virulence in mouse systemic infection or for adherence to HeLa cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	386646	388098	+	orf19.1514	386646	388098	1	386646	388098	386900	387922		orf19.9089|IPF9290.2|IPF8244.2|Contig4-1806_0003|Contig4-2754_0001|orf6.3399|orf6.3965|CA2180|IPF9290|CaO19.1514	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	387877	389456	-	orf19.1515	387877	389456	1	389456	387877	389302	388136	CHT4	orf19.9090|IPF25787.1|IPF8245.2|Contig4-1806_0001|orf6.3398|orf6.3966|CA1753|CaO19.1515|IPF8245	Chitinase; similar to S. cerevisiae sporulation-specific Cts2p; functionally complements A. gossypii cts2 mutant sporulation defect; homozygous null mutation causes no obvious defects; transcription decreases upon yeast-to-hyphal switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	388279	388882	+	ntar_320	388279	388882	1	388279	388882	388327	388470			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	389105	389328	+	ntar_321	389105	389328	1	389105	389328					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	389524	392183	+	orf19.1516	389524	392183	1	389524	392183	389652	392036		orf19.9091|IPF17697.2|IPF8246.2|Contig4-2807_0008|orf6.3397|orf6.3967|CA1752|UBP14|CaO19.1516	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	391983	392343	-	ntar_322	391983	392343	1	392343	391983	392141	391983			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	392570	393940	+	orf19.1517	392570	393940	2	392570|392835	392721|393940	392667	393895	ARO3	orf19.9092|orf6.3396|IPF25795.1|IPF8248.2|Contig4-2807_0007|CA1751|CaO19.1517|CaO19.9092|ARO3.exon2	3-Deoxy-D-arabinoheptulosonate-7-phosphate synthase; enzyme of aromatic amino acid biosynthesis; GCN-regulated; feedback-inhibited by phenylalanine when heterologously produced in S. cerevisiae; Aro3p and Aro4p catalyze the same reaction [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	394154	397753	+	orf19.1519	394154	397753	1	394154	397753	394340	397642		orf19.9094|IPF25872.1|IPF8252.2|Contig4-2807_0006|orf6.3394|CA1750|CaO19.1519|CaO19.9094|IPF8252	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	397731	401368	-	orf19.1522	397731	401368	1	401368	397731	401241	398113		orf19.9097|IPF25875.1|IPF8257.2|Contig4-2807_0004|orf6.1171|orf6.3391|CA1748|CaO19.1522|IPF8257.5f|IPF8257	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	402438	404124	-	orf19.1523	402438	404124	1	404124	402438	404124	402466	FMO1	orf19.9098|IPF15750.2|IPF15749.3|Contig4-2017_0003|orf6.1172|orf6.3390|CA0348|CaO19.1523|IFK1	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog, and to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	405578	407053	+	orf19.1524	405578	407053	1	405578	407053	405578	407053	SPR3	orf19.9100|IPF15746.3|IPF16732.2|Contig4-1766_0002|Contig4-2017_0004|orf6.1173|orf6.1204|CA0363|CaO19.1524	[NOT TRANSCRIBED?] Septin; mutant has no obvious phenotype [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	407366	407909	+	ntar_323	407366	407909	1	407366	407909					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	408121	409779	+	orf19.1525	408121	409779	1	408121	409779	408210	409406		orf19.9101|IPF18883.2|IPF15983.2|Contig4-2444_0002|orf6.1205|orf6.1860|CA0364|CaO19.1525|NMD4|IPF15983	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	410141	415541	+	orf19.1526	410141	415541	1	410141	415541	410274	415346	SNF2	orf19.9102|IPF15319.2|IPF15980.3|Contig4-2444_0006|Contig4-2444_0007|orf6.1206|orf6.1859|CA0747|CaO19.1526	Protein involved in transcriptional regulation; ortholog of S. cerevisiae Snf2p, which is the catalytic subunit of the SWI/SNF chromatin remodeling complex; interacts with Swi1p; SWI/SNF complex is essential for hyphal growth and virulence [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	415435	416174	-	orf19.1527	415435	416174	1	416174	415435	416069	415515		orf19.9103|IPF25813.1|IPF14921.2|Contig4-2467_0002|orf6.1858|CA0746|CaO19.9103|CaO19.1527|IPF14921	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	416463	417780	+	orf19.1528	416463	417780	1	416463	417780	416571	417626		orf19.9104|IPF14920.2|IPF29413.1|Contig4-2467_0004|Contig4-2467_0005|orf6.1857|CA0745|MTF1|CaO19.9104|CaO19.1528	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	417866	418894	-	orf19.1529	417866	418894	1	418894	417866	418894	417866			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	418987	419508	-	orf19.1530	418987	419508	1	419508	418987	419508	418987		IPF29422.1|CA6256|CaO19.1530|IPF14919.5f	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	419619	422319	-	orf19.1531	419619	422319	1	422319	419619	422123	419748		orf19.9106|IPF25746.1|IPF16839.3|Contig4-2467_0008|orf6.1855|orf6.931|CA0743|RNA14|CaO19.1531|RNA14.3eoc|IPF14917.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	422880	424448	+	orf19.1532	422880	424448	1	422880	424448	422927	423997		orf19.9107|IPF25786.1|IPF17420.2|Contig4-2467_0011|orf6.932|CA0230|CaO19.1532|TOM37	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	423934	424068	-	ntar_324	423934	424068	1	424068	423934					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	424554	424733	+	ntar_325	424554	424733	1	424554	424733					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	424930	426716	+	orf19.1533	424930	426716	1	424930	426716	425071	426447		orf19.9108|IPF15116.1|IPF17419.2|Contig4-1607_0002|orf6.839|CA0201|CaO19.1533|IPF17419|IPF15116	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	426198	426342	-	ntar_326	426198	426342	1	426342	426198					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	426988	429418	+	orf19.1534	426988	429418	1	426988	429418	427404	429179		orf19.9109|orf6.1064|IPF15119.2|IPF19059.2|orf6.838|CA0200|CaO19.1534|ZRT3|IPF15119	Protein similar to S. cerevisiae Zrt3p, which is a transporter of zinc ions; predicted Kex2p substrate [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	429228	430625	-	orf19.1535	429228	430625	1	430625	429228	430444	429650		orf19.9110|IPF25803.1|IPF14392.2|Contig4-2088_0007|orf6.1063|CA0285|CaO19.9110|CaO19.1535|IPF14392	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	429638	429846	+	ntar_327	429638	429846	1	429638	429846					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	432334	434724	+	orf19.1536	432334	434724	1	432334	434724	433195	434631		orf19.9111|IPF19060.1|Contig4-2088_0003|orf6.1061|orf6.1062|orf6.2308|CA6257|CA1030|orf19.1537|ZRC.5f	Putative protein of unknown function, required for normal filamentous growth; mRNA binds to She3p and is localized to hyphal tips; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	434600	436190	-	orf19.1538	434600	436190	1	436190	434600	436109	434841	TLG2	orf19.9112|IPF14397.2|IPF29411.1|Contig4-2088_0010|orf6.2307|CA1029|CaO19.1538	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	437457	438834	-	orf19.1539	437457	438834	1	438834	437457	438826	437627		orf19.9113|IPF25782.1|IPF6488.2|Contig4-2381_0006|orf6.2306|CA1028|CaO19.9113|CaO19.1539|IPF6488	Predicted ORF in Assemblies 19, 20 and 21; highly induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	442660	446680	-	orf19.1541	442660	446680	1	446680	442660	446421	443524		orf19.9115|IPF6493|IPF18788.2|IPF6493.2|Contig4-2847_0017|Contig4-2847_0018|orf6.2304|orf6.821|CA0193|CaO19.1541	Protein not essential for viability; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	447781	447970	+	ntar_328	447781	447970	1	447781	447970					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	448714	450664	-	orf19.1542	448714	450664	1	450664	448714	450618	448810	HEX3	orf19.9116|IPF25764.1|IPF6497.2|Contig4-2847_0014|orf6.6400|CA3970|CaO19.1542|CaO19.9116|IPF6497	Protein similar to S. cerevisiae Hex3p, which is involved in DNA damage response; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	450891	451382	+	ntar_329	450891	451382	1	450891	451382					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	451305	453032	-	orf19.1543	451305	453032	1	453032	451305	452791	451490	OPI1	orf19.9117|orf6.6401|IPF6498|IPF25784.1|IPF6498.2|Contig4-2847_0013|CA3971|CaO19.1543|CaO19.9117	Functional homolog of S. cerevisiae Opi1p, which is a transcriptional repressor of INO1 involved in inositol biosynthesis; has leucine zipper and putative Opi1-Sin3 interaction domain; interacts with ScSin3p, but not CaSin3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	455561	456598	+	orf19.1544	455561	456598	1	455561	456598	455598	456395		orf19.9118|IPF6504.2|IPF29417.1|Contig4-2788_0007|Contig4-2847_0005|orf6.6402|CA3972|CaO19.1544|CaO19.9118|IPF6504	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	456417	457023	-	orf19.1545	456417	457023	1	457023	456417	456971	456504		orf19.9119|IPF25834.1|IPF6505.2|Contig4-2847_0004|orf6.6403|CA3973|MRPS8|CaO19.9119|CaO19.1545|IPF6505	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	457203	458210	+	orf19.1546	457203	458210	1	457203	458210	457283	458161		orf19.9120|IPF25799.1|IPF6507.2|Contig4-2847_0002|orf6.6404|CA3974|CaO19.1546|FMP39|CaO19.9120|IPF6507	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	458133	459087	-	orf19.1547	458133	459087	1	459087	458133	459087	458182		orf19.9121|IPF25796.1|IPF20152.1|Contig4-2847_0001|orf6.6405|CA3975|PNK1|CaO19.9121|CaO19.1547|IPF20152	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	459116	459915	+	orf19.1548	459116	459915	1	459116	459915	459139	459870		orf19.9122|IPF25806.1|IPF15310.2|orf6.6406|CA3976|CaO19.1548|SNU23|CaO19.9122	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	460126	461241	+	orf19.1549	460126	461241	1	460126	461241	460292	461038		orf19.9123|IPF25802.1|IPF20153.1|Contig4-2092_0006|orf6.6407|CA3977|CaO19.9123|CaO19.1549|IPF20153	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide; identified in detergent-resistant membrane fraction (possible lipid raft component); predicted transmembrane helix [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	461216	461949	-	orf19.1552	461216	461949	1	461949	461216	461919	461344	CPR3	orf19.9126|IPF25810.1|IPF20154.1|Contig4-2092_0004|orf6.6410|CA3978|CaO19.9126|CaO19.1552	Protein described as a peptidyl-prolyl cis-trans isomerase; macrophage-induced protein; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	461669	462172	+	orf19.1551	461669	462172	1	461669	462172	461669	462172		orf19.9125|IPF25828.1|IPF20155.1|Contig4-2163_0001|orf6.6409|CaO19.9125|CaO19.1551	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	462279	464062	-	orf19.1553	462279	464062	2	464062|463716	463803|462279	463878	462431	ENT3	orf19.9127|IPF25779.1|IPF25794.1|IPF25744.1|IPF7129.2|IPF7127.2|IPF7128.2|Contig4-2092_0009|Contig4-2163_0004|orf6.6411|CA3979|ENT3.3f	Putative protein of unknown function, induced during the mating process; transcription is upregulated in an RHE model of oral candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	464446	468369	-	orf19.1555	464446	468369	1	468369	464446	468209	464538	SAC3	orf19.9129|IPF7130.2|IPF29415.1|IPF18010.3|Contig4-2824_0019|Contig4-2824_0021|orf6.355|orf6.6413|CA6258|CA3982|orf19.1556|SAC3.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	468494	469436	-	orf19.1557	468494	469436	1	469436	468494	469414	468572		orf19.9130|IPF7133.1|IPF19325.2|Contig4-2824_0012|Contig4-2824_0014|orf6.356|orf6.6414|CA3983|CaO19.1557|IPF7133|IPF7133.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	469476	470788	-	orf19.1559	469476	470788	1	470788	469476	470709	469612	HOM2	orf19.9132|IPF7136.1|IPF29412.1|Contig4-2824_0011|orf6.6416|CA3984|CaO19.1559	Putative aspartate-semialdehyde dehydrogenase; fungal-specific (no human or murine homolog); ketoconazole-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	471192	473090	+	orf19.1560	471192	473090	1	471192	473090	471244	472860	POB3	orf19.9133|IPF25771.1|IPF7138.2|Contig4-2824_0009|orf6.6417|CA3985|CaO19.1560|CaO19.9133	Protein similar to S. cerevisiae Pob3p, which is involved in chromatin assembly and disassembly; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	474452	475259	+	orf19.1562	474452	475259	1	474452	475259	474686	475228		orf19.9135|IPF25811.1|IPF7141.1|Contig4-2824_0006|orf6.6419|CA3986|CaO19.9135|CaO19.1562|IPF7141	Predicted ORF in Assemblies 19, 20 and 21; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	476533	478377	+	orf19.1563	476533	478377	1	476533	478377	476654	478294	ECM3	orf19.9136|IPF25768.1|IPF7144.2|Contig4-2824_0004|orf6.6420|CA3987|CaO19.1563|CaO19.9136	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	477018	477342	-	ntar_330	477018	477342	1	477342	477018	477342	477097			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	477408	477724	-	ntar_331	477408	477724	1	477724	477408					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	478523	479524	+	orf19.1564	478523	479524	1	478523	479524	478694	479263		orf19.9137|IPF25819.1|IPF7145.2|Contig4-2824_0002|orf6.6421|CA3988|CaO19.9137|CaO19.1564|IPF7145	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	479286	481270	-	orf19.1565	479286	481270	1	481270	479286	481184	479343		orf19.9138|IPF25756.1|IPF7147.2|Contig4-2824_0022|orf6.6422|CA3989|DUS3|CaO19.1565|CaO19.9138|IPF7147	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	481329	484290	+	orf19.1566	481329	484290	1	481329	484290	481408	484236	UTP21	orf19.9139|IPF25737.1|IPF14782.2|Contig4-2110_0005|Contig4-2110_0006|orf6.6423|CA3990|CaO19.1566|CaO19.9139|IPF14782	Predicted ORF in Assemblies 19, 20 and 21; physically interacts with TAP-tagged Nop1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	484461	487769	+	orf19.1567	484461	487769	1	484461	487769	484560	487664		orf19.9140|orf19.9141|IPF25780.1|IPF25769.1|IPF19794.1|IPF14783.2|Contig4-2110_0002|Contig4-2110_0004|orf6.6424|orf6.6425|CA3991|CA3992|orf19.1568|VAM6.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	487721	491580	-	orf19.1569	487721	491580	1	491580	487721	491423	487896	UTP22	orf19.9142|IPF8275.2|IPF29445.1|Contig4-2925_0002|Contig4-2925_0003|Contig4-2925_0005|orf6.6426|CA3993|CaO19.1569|IPF8275	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant; decreased expression in response to prostaglandins; heterozygous null mutant exhibits resistance to parnafungin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	491802	494207	+	orf19.1570	491802	494207	1	491802	494207	491866	494052	ERG7	orf19.9143|IPF8270.1|IPF19258.2|Contig4-2925_0007|orf6.480|orf6.6427|CA3994|CaO19.1570	2,3-epoxysqualene-lanosterol cyclase (lanosterol synthase), catalyzes the conversion of 2,3-oxidosqualene to lanosterol in sterol biosynthesis; fluconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	494311	495161	-	orf19.1571	494311	495161	2	495161|494723	494792|494311	495161	494311		orf19.9144|orf19.9145|IPF18269.2|IPF25857.1|IPF8269.2|IPF8268.2|Contig4-2925_0009|Contig4-2925_0010|orf6.479|orf6.6428|orf6.478|CA0091|orf19.1572|IPF8268|CA0092|IPF8268.3f	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	496197	496270	+	tv(aac)1	496197	496270	1	496197	496270				tV(AAC)1.2	tRNA-Val predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	496613	500809	-	orf19.1573	496613	500809	1	500809	496613	500706	496654		orf19.9146|IPF8267.2|IPF29441.1|Contig4-2925_0014|orf6.1885|orf6.477|CA0761|CaO19.1573|IPF8267	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	501095	503058	+	orf19.1574	501095	503058	1	501095	503058	501240	503006		orf19.9147|IPF15686.2|IPF29407.1|Contig4-2925_0020|orf6.1886|CA0762|TAF7|CaO19.1574|TAF67	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	503216	504463	+	orf19.1575	503216	504463	1	503216	504463	503401	504363	PRS1	orf19.9148|IPF15685.2|IPF9631.1|PRS3|Contig4-2410_0006|orf6.1887|orf6.5345|CA3168|CaO19.1575	Phosphoribosylpyrophosphate synthetase; enzyme of purine, pyrimidine, histidine, and tryptophan biosynthesis; essential; flucytosine induced; macrophage/pseudohyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	504678	507226	+	orf19.1576	504678	507226	1	504678	507226	504784	506652		orf19.9149|IPF25763.1|IPF9632.2|Contig4-2410_0005|orf6.5344|CA3167|CaO19.1576|CaO19.9149|IPF9632	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	507756	509084	+	orf19.1577	507756	509084	1	507756	509084	507756	509084		orf19.9150|IPF25781.1|IPF9634.1|Contig4-3005_0030|orf6.5343|CA3166|CaO19.1577|CaO19.9150|IPF9634	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	509403	514738	+	orf19.1578	509403	514738	1	509403	514738	509452	514620		orf19.9151|IPF25824.1|IPF9638.2|Contig4-3005_0028|Contig4-3005_0029|orf6.5342|CA3165|CaO19.1578|RRP5|CaO19.9151|FMI1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	514703	517117	-	orf19.1580	514703	517117	1	517117	514703	517088	514977		orf19.9153|IPF25755.1|IPF13187.2|Contig4-3005_0023|Contig4-3005_0025|orf6.5340|CA3164|YFW3|CaO19.1580|CaO19.9153|IPF13187	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	515743	515920	+	ntar_332	515743	515920	1	515743	515920					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	517722	518054	+	orf19.1581	517722	518054	1	517722	518054	517722	518054		orf19.9154|IPF29446.1|orf6.5339|CaO19.9154|CaO19.1581	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	519117	520844	+	orf19.1582	519117	520844	2	519117|519780	519713|520844	519117	520844		orf19.9155|orf19.9156|IPF25814.1|IPF25792.1|IPF13183.2|IPF13181.2|Contig4-3005_0018|Contig4-3005_0019|orf6.5337|orf6.5338|CA3163|CA3162|orf19.1583|HOL5.5f	Predicted membrane transporter, member of the drug:proton antiporter (12 spanner) (DHA1) family, major facilitator superfamily (MFS); mRNA binds to She3p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	519694	520848	-	ntar_333	519694	520848	1	520848	519694	519953	519786			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	521081	522796	+	orf19.1584	521081	522796	1	521081	522796	521169	522701		orf19.9157|IPF25774.1|IPF13121.2|Contig4-3005_0016|orf6.5336|CA3161|CaO19.9157|CaO19.1584|IPF13121.3	Predicted membrane transporter, member of the monocarboxylate porter (MCP) family, major facilitator superfamily (MFS); shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	521217	522463	-	ntar_334	521217	522463	1	522463	521217	521584	521444			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	522989	523305	-	ntar_335	522989	523305	1	523305	522989	523305	523063			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	523979	525370	+	orf19.1585	523979	525370	1	523979	525370	524084	525196	ZRT2	orf19.9158|IPF25789.1|IPF13128.2|Contig4-3005_0008|orf6.5335|CA3160|CaO19.1585|CaO19.9158	Protein described as predicted zinc transporter; ciclopirox olamine, fluconazole, or alkaline downregulated; transcriptionally induced by interaction with macrophage; amphotericin B induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	525603	526490	-	orf19.1586	525603	526490	1	526490	525603	526490	525603	FGR22	orf19.9159|IPF25798.1|IPF13130.2|PLC3|PLC2|Contig4-3005_0005|orf6.5334|CA3159|PLC22|CaO19.9159|CaO19.1586	Putative phosphatidylinositol-specific phospholipase C (PI-PLC); predicted type 2 membrane protein; no S. cerevisiae ortholog; role in, and regulated by, filamentation; no mouse systemic virulence role; almost identical to orf19.5797 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr2	526890	528401	-	orf19.1587	526890	528401	1	528401	526890	528401	526890	HGT20	orf19.9160|IPF25777.1|IPF13131.2|Contig4-3005_0004|orf6.5333|CA3158|CaO19.9160|CaO19.1587|IPF13131.3	Putative glucose transporter of the major facilitator superfamily; the C. albicans glucose transporter family comprises 20 members; 12 probable membrane-spanning segments; regulated by Nrg1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr2	529017	529937	+	orf19.1588	529017	529937	1	529017	529937	529140	529559		orf19.9161|IPF25850.1|IPF14456.2|Contig4-3005_0003|orf6.5332|CA3157|CaO19.9161|FMP21|CaO19.1588|IPF14456	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	529990	532049	+	orf19.1589	529990	532049	1	529990	532049	530098	531411		orf19.9162|IPF25783.1|IPF14455.1|Contig4-3005_0002|orf6.5331|CA3156|RRN7|CaO19.9162|CaO19.1589|IPF14455	Putative DNA-binding transcription factor [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	531829	533492	-	orf19.1589.1	531829	533492	1	533492	531829	533492	532131			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	534851	535636	-	orf19.5842	534851	535636	1	535636	534851	535636	534851		orf19.13264|IPF21411.1|IPF11219.2|orf6.6136|CaO19.5842|CaO19.13264	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	536236	537079	+	orf19.5841	536236	537079	1	536236	537079	536271	537029		orf19.13263|IPF21413.1|IPF11221.1|Contig4-2921_0007|orf6.6137|CA3779|CaO19.5841|CaO19.13263|IPF11221	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	536773	537520	-	orf19.5840	536773	537520	1	537520	536773	537520	537026		orf19.13262|IPF21420.1|IPF11222.1|Contig4-2921_0006|orf6.6138|CA3780|CaO19.13262|CaO19.5840|IPF11222	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	537556	538748	+	orf19.5839	537556	538748	1	537556	538748	537582	538676	PDR17	orf19.13261|IPF21403.1|IPF11224.2|Contig4-2921_0005|orf6.6139|CA3781|CaO19.5839|CaO19.13261|IPF11224	Predicted ORF in Assemblies 19, 20 and 21; role in sensitivity to fluconazole, specifically; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	538971	540044	+	orf19.5838	538971	540044	1	538971	540044	539009	539914		orf19.13260|IPF21408.1|IPF11225.2|Contig4-2921_0004|orf6.6140|CA3782|SER2|CaO19.13260|CaO19.5838	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	539874	540917	-	orf19.5837	539874	540917	1	540917	539874	540881	539988		orf19.13259|IPF21405.1|IPF11226.1|Contig4-2921_0003|orf6.6141|CA3783|CaO19.5837|CaO19.13259|IPF11226	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	540951	541974	-	orf19.5835	540951	541974	1	541974	540951	541905	541063		orf19.13257|IPF21410.1|IPF11229.1|Contig4-2921_0001|orf6.6143|CA3784|RRP7|CaO19.13257|CaO19.5835|IPF11229	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	542214	545426	+	orf19.5834	542214	545426	1	542214	545426	542346	545354		orf19.13256|IPF21443.1|IPF19788.1|orf6.6144|CA3785|SXM1|CaO19.5834|CaO19.13256|IPF19788	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	545674	546892	+	orf19.5833	545674	546892	1	545674	546892	545705	546796		orf19.13255|IPF21394.1|IPF14267.1|Contig4-1905_0003|orf6.6145|CA3786|CaO19.13255|UFD1|CaO19.5833	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	546784	547743	-	orf19.5832	546784	547743	1	547743	546784	547558	546917	HPT1	orf19.13254|IPF21416.1|IPF14266.2|Contig4-1905_0001|orf6.6146|CA3787|CaO19.5832|CaO19.13254	Protein abundance is affected by URA3 expression in the CAI-4 strain background; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	548198	549514	-	orf19.5831	548198	549514	1	549514	548198	549514	548198		orf19.13253|IPF21393.1|IPF16445.1|Contig4-1906_0002|orf6.6147|CA3788|CaO19.13253|CaO19.5831|IPF16445	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	549778	550115	-	ntar_336	549778	550115	1	550115	549778					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	550316	553303	+	orf19.5830	550316	553303	1	550316	553303	550397	553195		orf19.13252|orf6.6148|IPF11217.2|IPF27925.1|Contig4-2543_0002|CA3789|CaO19.5830|LHS1|CaO19.13252|IPF11217	Protein similar to S. cerevisiae Hsp70p; predicted Kex2p substrate [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	553488	555726	+	orf19.5828	553488	555726	1	553488	555726	553526	555679		orf19.13250|IPF11215.2|IPF27906.1|Contig4-2543_0003|orf6.6150|CA3790|UAF1|CaO19.5828|IPF11215	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	555368	556697	-	orf19.5827	555368	556697	1	556697	555368	556659	555715	BUB2	orf19.13249|IPF11212|IPF21407.1|IPF11212.2|Contig4-2543_0004|orf6.6151|CA3791|CaO19.5827|CaO19.13249	Predicted ORF in Assemblies 19, 20 and 21; described as similar to S. cerevisiae Bub2p; mutation confers hypersensitivity to amphotericin B; induced upon adherence to polystyrene; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	557037	558713	-	orf19.5826	557037	558713	1	558713	557037	558713	557079		orf19.13248|IPF21388.1|IPF11211.2|Contig4-2543_0005|orf6.6152|CA3792|CaO19.13248|UGA41|CaO19.5826|UGA5	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	560216	560828	+	orf19.5825.1	560216	560828	1	560216	560828	560291	560581		IPF21439.1|IPF5701.2|Contig4-2711_0001|CA3793|IPF5701	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	560614	561414	-	orf19.5825	560614	561414	1	561414	560614	561278	560829		orf19.13247|IPF21425.1|IPF5700.2|Contig4-2711_0003|orf6.6153|CA3794|NCB2|CaO19.13247|CaO19.5825	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	561832	563185	-	orf19.5824	561832	563185	1	563185	561832	563093	562032		orf19.13246|IPF21404.1|IPF5699.2|Contig4-2711_0004|orf6.6154|CA3795|CaO19.5824|CaO19.13246|IPF5699	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	563327	564698	-	orf19.5823	563327	564698	1	564698	563327	564635	563601	SGT2	orf19.13245|IPF21399.1|IPF5697.2|Contig4-2711_0006|orf6.6155|CA3796|CaO19.5823|CaO19.13245	Protein abundance is affected by URA3 expression in the CAI-4 strain background; transcription is regulated by Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	564850	568512	-	orf19.5821	564850	568512	1	568512	564850	568512	564943		orf19.13243|IPF21436.1|IPF5693.2|Contig4-2711_0009|orf6.6157|CA3797|CaO19.5821|CaO19.13243|IPF5633|IPF5623	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	570159	571793	+	orf19.5820	570159	571793	1	570159	571793	570159	571793	UGA6	orf19.13242|IPF5691.3|IPF27909.1|Contig4-2836_0014|orf6.4039|orf6.6158|CA3798|UGA42|CaO19.5820|CA2224|UGA6.3eoc|IPF19944.1	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21; decreased transcription is observed upon benomyl treatment or in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	572682	574229	+	orf19.5818	572682	574229	1	572682	574229	573007	574035	SUR2	orf19.13240|IPF21401.1|IPF5688.1|Contig4-2836_0010|orf6.4041|CA2225|CaO19.13240|CaO19.5818	Protein described as similar to ceramide hydroxylase; predicted enzyme of sphingolipid biosynthesis; upregulated in biofilm; regulated by Tsa1p, Tsa1Bp under H2O2 stress conditions [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	574368	575399	+	orf19.5817	574368	575399	2	574368|574563	574483|575399	574430	575084		orf19.13239|IPF21419.1|IPF5686.1|Contig4-2836_0009|orf6.4042|CA2226|BET3.3f|BET3.exon2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	575254	576711	-	orf19.5816	575254	576711	1	576711	575254	576539	575361	EBP7	orf19.13238|IPF21400.1|IPF5684.2|Contig4-2836_0008|orf6.4043|CA2227|CaO19.5816|OYE25|CaO19.13238	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	577696	580215	+	orf19.5815	577696	580215	1	577696	580215	577904	580060	SCT2	orf19.13237|IPF21381.1|IPF5683.2|Contig4-2836_0004|orf6.4044|CA2228|CaO19.5815|GPT2|CaO19.13237|SCT12	Putative glycerol-3-phosphate acyltransferase; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	580474	581113	+	orf19.5814	580474	581113	1	580474	581113	580643	580993		orf19.13236|IPF21435.1|IPF5682.2|orf6.4045|CA2229|CaO19.5814|CaO19.13236|IPF5682	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	581161	581507	-	ntar_337	581161	581507	1	581507	581161					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	581910	582540	+	ntar_338	581910	582540	1	581910	582540	582058	582321			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	582476	582806	-	ntar_339	582476	582806	1	582806	582476	582698	582546			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	583104	584223	+	orf19.5813	583104	584223	1	583104	584223	583289	583846		orf19.13235|IPF9302.3|IPF27912.1|Contig4-2152_0007|orf6.4046|orf6.6647|CA4164|CaO19.5813|IPF9302|IPF9302.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	584119	585565	-	orf19.5812	584119	585565	1	585565	584119	585527	584262		orf19.13234|IPF21397.1|IPF9301.2|Contig4-2152_0009|orf6.6646|CA4163|CaO19.13234|CaO19.5812|IPF9301	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	586227	587981	+	orf19.5811	586227	587981	1	586227	587981	586227	587912	MET1	orf19.13233|IPF21386.1|IPF9300.2|Contig4-2921_0008|orf6.6645|CA4162|CaO19.5811|CaO19.13233	Putative uroporphyrin-3 C-methyltransferase; enzyme of methionine biosynthesis; upregulated in the presence of human whole blood or polymorphonuclear (PMN) cells; Hog1p-induced; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	588097	589795	+	orf19.5809	588097	589795	1	588097	589795	588237	589598		orf19.13231|IPF21392.1|IPF20164.1|Contig4-2921_0009|orf6.6643|CA4161|IPF20164	Putative arylformamidase, enzyme of the NAD biosynthesis pathway; Gcn4p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=C]
Ca21chr2	589627	591219	-	orf19.5808	589627	591219	1	591219	589627	591139	589898		orf19.13230|IPF21395.1|IPF9294.2|Contig4-2921_0011|orf6.6642|CA4160|CaO19.5808|CaO19.13230|IPF9294	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	591395	593023	-	orf19.5806	591395	593023	1	593023	591395	592987	591488	ALD5	orf19.13228|YER73|IPF17030.2|IPF27910.1|Contig4-2921_0012|orf6.6640|CA4159|ALD99|CaO19.5806	Protein described as an aldehyde dehydrogenase; decreased expression in fluconazole-resistant isolate, or in hyphae; biofilm induced;fluconazole-downregulated; protein abundance is affected by URA3 expression in the CAI-4 strain background [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	595086	597296	-	orf19.5805	595086	597296	1	597296	595086	597148	595394	DLD1	orf19.13227|IPF21387.1|IPF10287.2|DLD3|Contig4-3045_0019|Contig4-3045_0023|orf6.6639|CA4158|CaO19.13227|CaO19.5805	Putative D-lactate dehydrogenase; transcription is specific to white cell type; shows colony morphology-related gene regulation by Ssn6p; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	597427	601625	-	orf19.5804	597427	601625	1	601625	597427	601474	597563	HYU1	orf19.13226|IPF21434.1|IPF10288.2|Contig4-3045_0016|Contig4-3045_0017|orf6.6638|CA4157|CaO19.5804|CaO19.13226	Protein described as hydantoin utilization protein A; induced upon adherence to polystyrene; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	601840	603199	-	orf19.5802	601840	603199	1	603199	601840	603138	602098		orf19.13224|IPF21402.1|IPF10990.2|Contig4-3045_0015|orf6.6636|CA4156|CaO19.13224|CaO19.5802|IPF10990	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	603312	604942	-	orf19.5801	603312	604942	1	604942	603312	604784	603543	RNR21	orf19.13223|IPF21396.1|IPF10991.2|Contig4-3045_0013|orf6.6635|CA4155|RNR2|CaO19.5801|CaO19.13223	Protein described as similar to ribonucleoside-diphosphate reductase; regulated by tyrosol and cell density; transcription is upregulated in response to treatment with ciclopirox olamine; fluconazole or flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	606064	608846	-	orf19.5799	606064	608846	1	608846	606064	608308	606248		orf19.13221|IPF21383.1|IPF20010.1|Contig4-3045_0009|orf6.6633|CA4154|CaO19.13221|CaO19.5799|IPF20010	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	609577	610382	+	ntar_340	609577	610382	1	609577	610382	609732	609872			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	610754	613853	+	orf19.5798	610754	613853	1	610754	613853	610758	613544	LIG4	orf19.13220|CDC9|IPF21371.1|IPF6823.2|Contig4-3045_0005|orf6.6632|CA4153|CaO19.13220|CaO19.5798|DNLI	DNA ligase; mRNA detected in yeast-form and pseudohyphal cells, induced upon hyphal induction; suppresses S. cerevisiae ime1-1 mutant IME2 transcription defect; required for wild-type filamentous growth and wild-type pathogenesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	613916	615114	+	orf19.5797	613916	615114	1	613916	615114	614063	614950	PI-PLC	orf19.13219|IPF21406.1|IPF17332.2|PLC2|Contig4-3045_0004|orf6.6631|CA4152|CA6227|PLC2.5f|CaO19.5797|PLC21|CaO19.13219|PLC2.3f	Phosphatidylinositol (PtdIns)-specific phospholipase C (PI-PLC); predicted type 2 membrane protein; role in, and regulated by, filamentation, Nrg1p and Tup1p; no mouse systemic virulence role; orf19.5797 and orf19.1586 are almost identical [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	615116	616792	+	orf19.5796	615116	616792	1	615116	616792	615116	616690	SHE9	orf19.13218|IPF21389.1|IPF6829.2|Contig4-3045_0003|orf6.6630|CA4151|CaO19.13218|CaO19.5796	Protein with similarity to S. cerevisiae She9p, which inhibits growth when overproduced; gene has possible growth-regulation element; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	616909	618314	+	orf19.5793	616909	618314	1	616909	618314	616968	618203	PR26	orf19.13215|IPF21398.1|IPF6830.2|Contig4-3045_0002|orf6.6627|CA4150|CaO19.13215|RPT3|CaO19.5793	Protein with similarity to proteasomal 26S regulatory subunit of S. cerevisiae, H. sapiens, Methanobacterium thermoautotrophicum (Archaebacterium) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	618205	619816	-	orf19.5792	618205	619816	1	619816	618205	619788	618292	SMP3	orf19.13214|IPF21390.1|IPF6831.2|Contig4-3045_0001|orf6.6626|CA4149|CaO19.5792|CaO19.13214	Mannosyltransferase of glycosylphosphatidylinositol (GPI) biosynthesis; catalyzes mannosylation of Man3-GPI precursor; essential for viability; 8-9 transmembrane regions predicted; has HQEXRF motif; functional homolog of S. cerevisiae Smp3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	620864	622185	+	orf19.5791	620864	622185	1	620864	622185	620950	622059	IDH2	orf19.13213|orf6.6625|IPF6833.2|IPF27911.1|Contig4-2708_0009|CA4148|CaO19.5791	Protein described as isocitrate dehydrogenase subunit; transcription is upregulated in response to treatment with ciclopirox olamine; transcriptionally regulated by iron; expression greater in high iron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	622069	623357	-	orf19.5789	622069	623357	1	623357	622069	623036	622218	ADE8	orf19.13211|IPF17327.2|IPF6835.1|Contig4-2708_0008|orf6.4861|orf6.6623|CA4147|CaO19.5789	Predicted enzyme of amino acid biosynthesis; upregulated in biofilm; S. cerevisiae ortholog is Gcn4p regulated; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	623561	626411	+	orf19.5788	623561	626411	2	623561|623796	623595|626411	623592	626320	EFT2	orf19.13210|IPF17326.3|IPF6840.1|EFT2-1|Contig4-2708_0006|orf6.4860|orf6.6622|CA2810	Elongation Factor 2 (eEF2); GTPase; essential; highly expressed; target of sordarin antifungals; antigenic in human, mouse; lacks site for regulatory phosphorylation by eEF2 kinase; GCN-regulated; complements S. cerevisiae eft1 eft2 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	627689	627864	+	ntar_341	627689	627864	1	627689	627864					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	628082	629291	+	orf19.5785	628082	629291	1	628082	629291	628280	629158		orf19.13207|IPF21409.1|IPF16515.2|Contig4-2708_0001|orf6.4857|CaO19.5785|CaO19.13207	Predicted ORF in Assemblies 19, 20 and 21; greater mRNA abundance observed in a cyr1 or ras1 homozygous null mutant than in wild type; induced by nitric oxide; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	630688	632949	+	orf19.5784	630688	632949	1	630688	632949	630791	632920		orf19.13206|IPF11969.2|Contig4-2695_0010|orf6.4856|CA2809|CaO19.5784|AMO1|CaO19.13206	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	633116	634071	+	orf19.5783	633116	634071	1	633116	634071	633143	633763		orf19.13205|IPF21418.1|IPF11966.2|Contig4-2695_0008|orf6.4855|CA2808|CaO19.5783|CaO19.13205|IPF11966	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	633819	636339	-	orf19.5782	633819	636339	1	636339	633819	636276	634021		orf19.13204|IPF21375.1|IPF11965.2|Contig4-2695_0007|orf6.4854|CA2807|CaO19.5782|CaO19.13204|IPF11965	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	636461	638737	-	orf19.5780	636461	638737	1	638737	636461	638608	636587		orf19.13202|IPF21380.1|IPF11702.2|Contig4-2695_0005|orf6.4852|CA2806|CaO19.13202|CaO19.5780|IPF11702	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	639257	642054	-	orf19.5779	639257	642054	1	642054	639257	642004	639440	RNR1	orf19.13201|orf6.4851|IPF21372.1|IPF11704.2|Contig4-2695_0002|Contig4-2973_0004|CA2805|CaO19.5779|CaO19.13201	Protein similar S. cerevisiae Rnr1p, large subunit of ribonucleotide reductase; expression greater in low iron; transposon mutation affects filamentous growth; farnesol upregulated in biofilm; regulated by cell cycle, tyrosol, cell density [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	642827	643277	-	ntar_342	642827	643277	1	643277	642827					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	643399	644282	+	orf19.5777	643399	644282	1	643399	644282	643501	644211		orf19.13199|IPF21412.1|IPF19961.1|Contig4-2973_0002|orf6.4849|CA2804|CaO19.13199|CaO19.5777|IPF19961	Predicted ORF in Assemblies 19, 20 and 21; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	644227	654222	-	orf19.5776	644227	654222	1	654222	644227	654222	644362	TOM1	orf19.13198|orf19.8529|orf19.8530|IPF21369.1|IPF11711.2|IPF26413.1|IPF26466.1|IPF18528.2|IPF4563.2|Contig4-3099_0044|Contig4-3099_0045|orf6.3949|orf6.3950|orf6.4848|CA2803|CA2169|CA2170|orf19.911|orf19.912|CaO19.13198|CaO19.5776|IPF11711	Predicted ORF in Assemblies 19, 20 and 21; transcription is regulated by Nrg1p and Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	654708	654982	+	ntar_343	654708	654982	1	654708	654982	654824	654976			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	655482	656976	+	orf19.910	655482	656976	1	655482	656976	655606	656946		orf19.8528|IPF26426.1|IPF4558.1|Contig4-3099_0042|orf6.3948|CA2168|PRP3|CaO19.8528|CaO19.910|IPF4558	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	655546	655734	-	ntar_344	655546	655734	1	655734	655546	655728	655561			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	657141	657767	+	orf19.909.1	657141	657767	3	657141|657357|657600	657235|657505|657767	657188	657627			Predicted ORF in Assembly 20 and 21; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	657854	658320	-	ntar_345	657854	658320	1	658320	657854					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	658915	660287	-	orf19.909	658915	660287	1	660287	658915	660121	658991	STP4	orf19.8527|IPF26436.1|IPF4553.2|Contig4-3099_0038|orf6.3947|CA2167|CaO19.8527|CaO19.909|IPF4553	Putative transcription factor with zinc finger DNA-binding motif; induced in core caspofungin response; shows colony morphology-related gene regulation by Ssn6p; induced by 17-beta-estradiol, ethynyl estradiol [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	663080	663580	+	ntar_346	663080	663580	1	663080	663580					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	663495	664781	-	orf19.908	663495	664781	1	664781	663495	664628	663750	FEN12	orf19.8526|IPF18186.2|IPF4547.2|Contig4-3099_0035|orf6.3945|orf6.3946|orf6.7270|CA2166|orf19.907|FEN99|CaO19.908	Predicted ORF in Assemblies 19, 20 and 21; amphotericin B, caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	665206	669700	-	orf19.906	665206	669700	1	669700	665206	669665	665520	ROM2	orf19.8525|IPF26481.1|IPF4544.1|Contig4-3099_0031|orf6.7271|CA4668|CaO19.906|CaO19.8525	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	670052	670252	+	ntar_347	670052	670252	1	670052	670252	670082	670252			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	672760	674206	+	orf19.905	672760	674206	1	672760	674206	672821	674143	AVT7	orf19.8524|IPF26427.1|IPF4537.1|Contig4-3099_0028|orf6.7272|CA4669|CaO19.8524|CaO19.905|IPF4537	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Avt7p; downregulated upon adherence to polystyrene; constitutive expression independent of MTL or white-opaque status [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	674314	675314	+	orf19.904	674314	675314	1	674314	675314	674364	675065		orf19.8523|IPF26452.1|IPF4536.1|Contig4-3099_0027|orf6.7273|CA4670|CaO19.904|CaO19.8523|IPF4536	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	675856	676725	+	orf19.903	675856	676725	1	675856	676725	675910	676656	GPM1	orf19.8522|IPF26449.1|IPF4535.2|GPM1-1|Contig4-3099_0022|orf6.7274|CA4671|CaO19.903|CaO19.8522	Surface protein that binds host complement Factor H and FHL-1; phosphoglycerate mutase; antigenic in murine, human infection; biofilm-, fluconazole-, or amino acid starvation (3-aminotriazole treatment) induced, farnesol-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	676992	679374	+	orf19.900	676992	679374	1	676992	679374	677135	679291		orf19.8519|IPF26399.1|IPF3659.2|Contig4-3099_0020|orf6.7277|CA4672|NSP1|CaO19.900|CaO19.8519|IPF3659	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	679574	680568	+	orf19.899	679574	680568	1	679574	680568	679664	680512		orf19.8518|IPF26445.1|IPF3661.2|Contig4-3099_0019|orf6.7278|CA4673|CaO19.899|CaO19.8518|IPF3661	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	680766	682194	+	orf19.898	680766	682194	1	680766	682194	681030	682055	HEM2	orf19.8517|orf6.8517|IPF26438.1|IPF3663.2|Contig4-3099_0017|orf6.7279|CA4674|CaO19.8517|CaO19.898	Protein described as porphobilinogen synthase; transcriptionally regulated by iron; expression greater in high iron; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	680970	681151	-	ntar_348	680970	681151	1	681151	680970					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	681531	681849	-	ntar_349	681531	681849	1	681849	681531					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	682047	683030	-	orf19.897	682047	683030	1	683030	682047	682866	682216		orf19.8516|IPF26446.1|IPF3664.2|Contig4-3099_0016|orf6.7280|CA4675|CaO19.897|CaO19.8516|IPF3664	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	684001	691486	+	orf19.896	684001	691486	1	684001	691486	684001	691416	CHK1	orf19.8515|orf6.7978|HK1|IPF26451.1|IPF3668.2|Contig4-3099_0013|Contig4-3099_0015|orf6.7281|CA4676|CaO19.8515|CaO19.896	Histidine kinase involved in a two-component signaling pathway that regulates cell wall biosynthesis; disruption impairs hyphal development and decreases virulence in mouse intravenous (but not rat vaginal) infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	684022	684317	-	ntar_350	684022	684317	1	684317	684022	684180	684022			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	684595	684792	-	ntar_351	684595	684792	1	684792	684595					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	691404	692948	-	orf19.895	691404	692948	1	692948	691404	692680	691547	HOG1	orf19.8514|IPF26431.1|IPF3669.2|Contig4-3099_0012|orf6.7282|CA4677|CaO19.8514|CaO19.895	MAP kinase of osmotic-, heavy metal-, and core stress response; role in regulation of glycerol, D-arabitol in response to stress; phosphorylated in response to H2O2 (Ssk1p-dependent) or NaCl; mutant induces protective mouse immune response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	693076	695527	+	orf19.894	693076	695527	1	693076	695527	693076	695166		orf19.8513|IPF26401.1|IPF3670.2|Contig4-3099_0008|Contig4-3099_0010|orf6.7283|CA4678|RGP1|CaO19.8513|CaO19.894|IPF3670	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	695656	697658	+	orf19.893	695656	697658	1	695656	697658	695838	697511	PGA17	orf19.8512|IPF26415.1|IPF3674.2|Contig4-3099_0006|orf6.7284|CA4679|CaO19.8512|CaO19.893|IPF3674	Putative GPI-anchored protein of unknown function; exogenously expressed protein is a substrate for Kex2p processing in vitro; transcription is repressed in response to alpha pheromone in SpiderM medium; macrophage-induced gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	698160	700749	+	orf19.891	698160	700749	1	698160	700749	698222	700558		orf19.8510|IPF26387.1|IPF3677.1|Contig4-3099_0004|orf6.7286|CA4680|AMD1|CaO19.891|CaO19.8510	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	700893	702539	+	orf19.889	700893	702539	1	700893	702539	700893	702539	THI20	orf19.8508|IPF26412.1|IPF3679.2|Contig4-3099_0003|orf6.7288|CA4681|CaO19.8508|CaO19.889|IPF3679	Putative phosphomethylpyrimidine kinase; also described as a putative transcription factor with TENA DNA-binding motif; fungal-specific (no human or murine homolog) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	702305	702535	-	ntar_352	702305	702535	1	702535	702305	702535	702392			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	702743	707164	+	orf19.886	702743	707164	1	702743	707164	702830	707023	PAN1	orf19.8505|IPF26482.1|IPF3687.2|Contig4-3099_0002|orf6.7292|CA4682|CaO19.8505|CaO19.886|IPF3687	Essential protein involved in endocytosis and polarized growth; similar to <i>S. cerevisiae</i> Pan1p, which is a part of a complex that regulates actin cytoskeleton [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	707072	709855	-	orf19.882	707072	709855	1	709855	707072	709618	707180	HSP78	orf19.8501|orf19.8503|IPF26442.1|IPF26425.1|IPF9007.2|IPF9010.2|Contig4-2772_0009|Contig4-2772_0010|orf6.7293|orf6.7295|CA4684|CA4683|orf19.884|HSP78.5f	Protein described as a heat-shock protein; transcriptionally regulated by macrophage response; transcription is regulated by Nrg1p, Mig1p, Gcn2p, Gcn4p, Mnl1p; heavy metal (cadmium) stress-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	709950	712259	-	orf19.881	709950	712259	1	712259	709950	711992	710277	DFG16	orf19.8500|IPF9013|IPF18185.2|IPF9013.2|Contig4-2772_0008|orf6.7296|CA4685|CaO19.8500|CaO19.881	Protein of the Rim101p pathway that regulates filamentation in response to alkaline pH; required for host tissue invasion during infection; similar to S. cerevisiae Dfg16p that acts in Rim101p processing [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	712629	715967	+	orf19.880	712629	715967	1	712629	715967	712772	715804		orf19.8499|IPF26508.1|IPF9015.2|Contig4-2772_0004|Contig4-2772_0005|orf6.7297|CA4686|CaO19.880|SFB3|CaO19.8499|IPF9015	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	715751	718245	-	orf19.879	715751	718245	1	718245	715751	718203	715876		orf19.8498|IPF26393.1|IPF9017.2|Contig4-2772_0003|orf6.7298|CA4687|SHE4|CaO19.8498|CaO19.879|IPF9017	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	718327	719319	+	orf19.878	718327	719319	1	718327	719319	718377	719273	NBN1	orf19.8497|IPF26440.1|IPF9018.2|Contig4-2772_0001|orf6.7299|CA4688|YNG2|CaO19.878|CaO19.8497	Subunit of the NuA4 histone acetyltransferase complex; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	719592	720473	+	orf19.876	719592	720473	1	719592	720473	719652	720392	PGA33	orf19.8495|IPF9020.2|IPF29660.1|Contig4-2937_0001|orf6.7301|CA4689|CaO19.876|IPF9020	Putative GPI-anchored protein of unknown function; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	720723	722076	+	orf19.875	720723	722076	1	720723	722076	720723	721982		orf19.8494|IPF3959.2|IPF29654.1|Contig4-2937_0004|orf6.7302|CA4690|CaO19.875|IPF3959	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	721930	723253	-	orf19.874	721930	723253	1	723253	721930	723193	722087		orf19.8493|IPF26430.1|IPF3958.1|Contig4-2937_0005|orf6.7303|CA4691|CaO19.874|CaO19.8493|IPF3958	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	723575	724554	-	orf19.873.1	723575	724554	2	724554|724098	724175|723575	724341	723813	COX6	IPF26503.1|IPF26395.1|IPF3955.2|IPF3954.2|Contig4-2937_0006|COX6.3	Flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	724957	725316	-	orf19.873	724957	725316	1	725316	724957	725316	724957		orf19.8492|IPF26486.1|IPF29678.1|Contig4-2937_0011|orf6.7304|CaO19.8492|CaO19.873	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	725313	726730	-	orf19.872	725313	726730	1	726730	725313	726593	725313		orf19.8491|IPF26423.1|IPF3952.1|Contig4-2937_0012|orf6.7305|CA4693|CaO19.872|SFP1|CaO19.8491|IPF3952	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	728216	731678	+	orf19.871	728216	731678	1	728216	731678	728433	731492		orf19.8490|IPF3950.2|IPF29698.1|Contig4-2937_0019|orf6.2459|orf6.7306|CA4694|LST4|CaO19.871|IPF3950	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	731991	732127	+	ntar_353	731991	732127	1	731991	732127	731991	732119			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	740206	740658	+	ntar_354	740206	740658	1	740206	740658	740362	740484			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	740632	742717	-	orf19.868	740632	742717	1	742717	740632	742466	740829	ADAEC	orf19.8487|IPF3937.2|IPF3935.3|Contig4-2634_0003|orf6.2588|orf6.72|CA1203|CaO19.868|IPF3937	Transcription is specific to white cell type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	747165	749044	+	orf19.867	747165	749044	1	747165	749044	747283	748896		orf19.8486|IPF14524.2|IPF17850.2|Contig4-2449_0003|orf6.2589|orf6.3547|orf6.567|CA1204|CaO19.867|IPF14524	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	749592	751861	+	orf19.866	749592	751861	1	749592	751861	749879	751801	RAD32	orf19.8485|IPF14521.2|IPF15212.1|Contig4-2942_0014|orf6.2590|orf6.3548|CA1861|RAD30|CaO19.866	Protein similar to S. cerevisiae protein with role in nucleotide excision repair; down-regulation associated with azole resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	751046	755100	-	orf19.864	751046	755100	1	755100	751046	755005	751901		orf19.8483|IPF26501.1|IPF7641.2|Contig4-2942_0012|Contig4-2942_0013|orf6.3550|CA1862|NMD2|CaO19.864|CaO19.8483	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	755197	756484	-	orf19.863	755197	756484	1	756484	755197	756454	755318		orf19.8482|IPF26428.1|IPF7643.1|Contig4-2942_0011|orf6.3551|CA1863|CaO19.863|MRPL35|CaO19.8482	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	756651	757622	-	orf19.862	756651	757622	1	757622	756651	757498	756788		orf19.8481|IPF26453.1|IPF7644.2|Contig4-2942_0009|orf6.3552|CA1864|CaO19.862|CaO19.8481|IPF7644	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	757676	758095	+	ntar_355	757676	758095	1	757676	758095	757802	758041			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	757944	759063	-	orf19.861	757944	759063	1	759063	757944	758733	758203		orf19.8480|IPF26462.1|IPF7646.2|Contig4-2942_0008|orf6.3553|CA1865|CaO19.8480|CaO19.861|IPF7646	Predicted transcriptional regulator with bZip domain [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	759478	761991	+	orf19.860	759478	761991	1	759478	761991	759544	761628	BMT8	orf19.8479|IPF17595.2|IPF7647.2|Contig4-2942_0006|orf6.1229|orf6.3554|CA1866|CaO19.860|WRY3|IPF7647	Putative beta-mannosyltransferase, member of a 9-gene family that includes characterized genes BMT1, BMT2, BMT3, and BMT4 with roles in beta-1,2-mannosylation of cell wall phosphopeptidomannan; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	763170	765270	+	orf19.857	763170	765270	1	763170	765270	763501	765159	FMO2	orf19.8477|IPF18598.2|IPF18599.1|Contig4-2942_0002|orf6.1227|orf6.3555|CA6181|CA1867|orf19.859|IFK3.3f|CA0374|IFK3|IPF7651.2	Predicted ORF in Assemblies 19, 20 and 21; expression regulated during planktonic growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	766053	766194	-	ntar_356	766053	766194	1	766194	766053					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	766380	768321	+	orf19.856	766380	768321	1	766380	768321	766651	768309	IFK2	orf19.8476|IPF26414.1|IPF11973.1|Contig4-2541_0011|orf6.1905|orf6.3556|CA0775|FMO3|CaO19.856|CA0373|IPF7655.5eoc|IPF7655.2	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	768528	769277	+	orf19.855	768528	769277	1	768528	769277	768528	769277			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	769641	771404	+	orf19.854	769641	771404	1	769641	771404	769797	771101	UGA11	orf19.8474|IPF26422.1|IPF26397.1|IPF11975.1|IPF11976.1|Contig4-2541_0008|orf6.1903|CA0773|orf19.853.3|UGA11.5f|UGA11.exon1	Predicted ORF in Assemblies 19, 20 and 21; macrophage-induced gene; overlaps orf19.854.1, which is a region annotated as a blocked reading frame [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	771813	771884	+	te(cuc)1	771813	771884	1	771813	771884				tE(CUC)1.2	tRNA-Glu predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	773165	774423	+	orf19.853	773165	774423	1	773165	774423	773182	774273	SAP99	orf19.8473|orf6.1902|IPF26434.1|IPF11977.3|Contig4-2541_0002|CA0771|CaO19.853|IPF11977|IPF11977.2	Putative secreted aspartyl protease; possible Kex2p substrate; transcriptionally regulated by iron; expression greater in low iron; repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	775114	776741	+	orf19.852	775114	776741	1	775114	776741	775519	776613	SAP98	orf19.8472|IPF26435.1|IPF14031.2|Contig4-2545_0002|orf6.1542|CA0549|CaO19.852|IPF14031|IPF14031.1	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p; expressed in opaque MTLa/MTLa cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	776681	779482	-	orf19.851	776681	779482	1	779482	776681	779482	776966		orf19.8471|orf6.1543|IPF26385.1|IPF14030.2|Contig4-2545_0003|Contig4-2545_0006|CA0550|MNN42|CaO19.8471|CaO19.851|IPF14030	Protein of unknown function; transcription is negatively regulated by Rim101p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	782160	783852	+	orf19.850	782160	783852	1	782160	783852	782312	783436		orf19.8470|IPF14821.1|IPF29657.1|Contig4-2545_0010|orf6.1044|CA0275|CaO19.850|NTA1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	785985	788531	+	orf19.849	785985	788531	1	785985	788531	785985	788531		orf19.8469|IPF19106.2|IPF19522.1|orf6.1043|orf6.900|orf6.3745|MNN4|CA0217|MNN41|CaO19.849	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	789616	789939	+	orf19.848	789616	789939	1	789616	789939	789616	789939			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	790263	790335	+	tr(ucu)2	790263	790335	1	790263	790335				tR(UCU)2.2	tRNA-Arg predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	790342	790429	+	tf(gaa)2	790342	790429	2	790342|790394	790378|790429				tF(GAA)2.2	tRNA-Phe predicted by tRNAscan-SE; has atypical tertiary T15A48 basepair (rather than R15Y48 basepair) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	791026	792374	+	orf19.847	791026	792374	1	791026	792374	791079	792167	YIM1	orf19.8467|IPF3415.2|IPF29656.1|IPF3415|Contig4-2477_0005|orf6.3747|CA2016|CaO19.847|CaO19.8467	Protein similar to protease of mitochondrial inner membrane; increased transcription is observed upon benomyl treatment; macrophage-downregulated gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	792299	795434	-	orf19.846	792299	795434	1	795434	792299	795282	792391		orf19.8466|IPF26381.1|IPF3414.2|Contig4-2477_0006|Contig4-2729_0002|orf6.3748|CA2017|CaO19.8466|CaO19.846|IPF3414	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	795625	798374	-	orf19.844	795625	798374	1	798374	795625	798201	795727	STE11	orf19.8464|IPF26388.1|IPF3412.2|Contig4-2729_0006|orf6.3750|CA2018|CaO19.844|CaO19.8464	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Ste11p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	798530	800894	-	orf19.843	798530	800894	1	800894	798530	800845	798659		orf19.8463|IPF3409.2|IPF29645.1|Contig4-2729_0007|orf6.3751|CA2019|CaO19.8463|CaO19.843|IPF3409	Putative DNA repair exonuclease; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	801054	801628	-	orf19.842	801054	801628	1	801628	801054	801591	801181	ASR3	orf19.8462|IPF16901.1|IPF3408.3|Contig4-2729_0008|orf6.3752|orf6.3853|CA2020|CaO19.842|IPF16901	Gene regulated by cAMP and by osmotic stress; greater mRNA abundance observed in a cyr1 or ras1 homozygous null mutant than in wild type; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	801949	804164	-	orf19.841	801949	804164	1	804164	801949	804110	802020		orf19.8461|IPF26400.1|IPF3406.3|Contig4-2739_0006|orf6.3753|orf6.3852|CA2093|CaO19.841|IPF3406|IPF3406.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	804324	805395	-	orf19.840	804324	805395	2	805395|804973	805304|804324	805314	804502	RPL21A	orf19.8460|IPF19037.2|IPF3404.2|Contig4-2739_0007|orf6.1127|orf6.3851|CA2092|RPL21A.3	Putative ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	805606	806906	-	orf19.838.1	805606	806906	2	806906|806362	806851|805606	806857	805800	RPS9B	IPF3402.2|IPF29662.1|Contig4-2739_0010|orf6.1126|CA0322	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; possibly transcriptionally regulated upon hyphal formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	807083	809054	+	orf19.839	807083	809054	1	807083	809054	807091	809031		orf19.8458|IPF16075.2|IPF3401.1|Contig4-2676_0017|Contig4-2676_0019|Contig4-2739_0012|orf6.1125|orf6.3850|CA2091|CaO19.839|IPF3401	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant; mutation confers hypersensitivity to aureobasidin A [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	809036	809787	-	orf19.837.1	809036	809787	2	809787|809423	809508|809036	809639	809163	INO4		Transcriptional activator that may be involved in regulation of ribosomal protein genes; forms a heterodimer with Ino2p; related to <i>S. cerevisiae</i> Ino4p; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	810413	810485	+	tr(ucu)3	810413	810485	1	810413	810485				tR(UCU)3.2	tRNA-Arg predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	810492	810579	+	tf(gaa)3	810492	810579	2	810492|810544	810528|810579				tF(GAA)3.2	tRNA-Phe predicted by tRNAscan-SE; has atypical tertiary T15A48 basepair (rather than R15Y48 basepair) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	810814	811735	+	orf19.837	810814	811735	1	810814	811735	811096	811545	GNA1	orf19.8457|IPF26470.1|IPF3395.2|Contig4-2676_0011|orf6.3848|CA2089|CaO19.837|CaO19.8457	Glucosamine-6-phosphate acetyltransferase; enzyme of UDP-GlcNAc biosynthesis; required for viability in absence of GlcNAc supplementation; required for persistent infection and wild-type virulence in mouse systemic infection [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	811191	812299	-	orf19.836.1	811191	812299	4	812299|812048|811817|811712	812121|811902|811785|811191	812147	811695		IPF26402.1|IPF3394.2|CA2088|IPF3394	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	812313	813740	+	orf19.836	812313	813740	1	812313	813740	812380	813492		orf19.8456|orf6.3847|IPF26429.1|IPF3393.2|Contig4-2676_0008|CA2087|CaO19.8456|CaO19.836|IPF3393	Protein likely to be essential for growth, based on an insertional mutagenesis strategy [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	813422	816080	-	orf19.835	813422	816080	1	816080	813422	815909	813549		orf19.8455|IPF26392.1|IPF3392.2|Contig4-2676_0003|Contig4-2676_0006|orf6.3846|CA2086|CaO19.8455|CaO19.835|IPF3392	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	816304	819003	-	orf19.834	816304	819003	1	819003	816304	818868	816340		orf19.8454|IPF26384.1|IPF3388.2|Contig4-2676_0001|orf6.3845|CA2085|CaO19.8454|CaO19.834|IPF3388	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	819163	822665	-	orf19.832	819163	822665	1	822665	819163	822416	819369	GPI13	orf19.8452|orf19.8453|IPF26461.1|IPF16059.3|IPF3385.1|IPF3384.1|Contig4-2493_0001|Contig4-2493_0002|orf6.3843|orf6.3844|orf6.6723|CA2083|CA2084|orf19.833|IPF3384.5f	Protein of major facilitator superfamily; has phosphodiesterase/nucleotide pyrophosphatase domain; similar to S. cerevisiae Gpi13p, which acts in GPI anchor biosynthesis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	822937	824690	-	orf19.831	822937	824690	1	824690	822937	824624	823077		orf19.8451|IPF26420.1|IPF16057.2|Contig4-2493_0006|orf6.6722|CA4228|CaO19.831|CaO19.8451|IPF16057	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	823477	823741	+	ntar_357	823477	823741	1	823477	823741	823477	823644			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	825226	828104	-	orf19.829	825226	828104	1	828104	825226	827890	825527	SCH9	orf19.8449|IPF26391.1|IPF13426.2|Contig4-2493_0008|Contig4-2913_0014|orf6.6720|CA4227|CaO19.8449|CaO19.829	Protein required for chlamydospore formation and for embedded hyphal growth, not essential for viability; similar to S. cerevisiae Sch9p, which is a protein kinase involved in growth control [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	830475	831383	+	orf19.828	830475	831383	1	830475	831383	830516	831313		orf19.8448|IPF26441.1|IPF8752.2|Contig4-2913_0009|orf6.6719|CA4226|MRPL24|CaO19.8448|CaO19.828|IPF8752	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	830973	831378	-	ntar_358	830973	831378	1	831378	830973	831378	831232			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	831628	832679	+	orf19.827.1	831628	832679	2	831628|832122	831696|832679	831684	832408	RPL39	IPF26380.1|IPF8753.2|Contig4-2913_0008|CA4225|RPL39.3	Ribosomal protein L39; transcription is induced upon germ tube formation; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	832702	834487	+	orf19.827	832702	834487	2	832702|833507	833425|834487	832828	833565		orf19.8447|IPF26456.1|IPF8755.2|Contig4-2913_0007|orf6.6718|CA4224|CaO19.827|CaO19.8447|IPF8755	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	834005	836034	-	orf19.826	834005	836034	1	836034	834005	835946	834090		orf19.8446|IPF26408.1|IPF8757.2|Contig4-2913_0006|orf6.6717|CA4223|CaO19.8446|CaO19.826|IPF8757	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	836113	837425	+	orf19.825	836113	837425	1	836113	837425	836207	837304	GCD7	orf19.8445|IPF26437.1|IPF8759.2|Contig4-2913_0005|orf6.6716|CA4222|CaO19.8445|CaO19.825	Protein described as a translation initiator; downregulated in the presence of human whole blood or polymorphonuclear (PMN) cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	837333	838001	-	orf19.823	837333	838001	1	838001	837333	838001	837333		orf19.8443|IPF26454.1|IPF8760.2|Contig4-2913_0004|orf6.6714|CA4221|CaO19.823|CaO19.8443|IPF8760	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	838164	838760	-	orf19.822	838164	838760	1	838760	838164	838760	838191		orf19.8442|IPF26460.1|IPF8762.2|Contig4-2913_0002|orf6.6713|CA4220|CaO19.822|CaO19.8442|IPF8762	Protein detected in some, not all, biofilm extracts; fluconazole-downregulated; greater mRNA abundance observed in cyr1 or ras1 homozygous null mutant than in wild type; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	838971	840416	-	orf19.820	838971	840416	1	840416	838971	840282	839158	SDS22	orf19.8440|IPF26433.1|IPF8765.2|Contig4-2913_0001|orf6.6711|CA4219|CaO19.820|CaO19.8440	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	840427	841198	-	orf19.819	840427	841198	1	841198	840427	841148	840816		orf19.8439|IPF26496.1|IPF8766.2|orf6.6710|CA4218|CaO19.8439|ACP11|CaO19.819|ACP1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	841363	846741	-	orf19.816	841363	846741	1	846741	841363	846741	841435	DCK2	orf19.8436|IPF26463.1|IPF5809.2|orf6.6707|YLR422W-2|CA4217|CaO19.8436|CaO19.816|IPF5809	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Ylr422wp; transposon mutation affects filamentous growth; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	847468	853447	-	orf19.815	847468	853447	1	853447	847468	853403	847659	DCK1	orf19.8435|IPF5806.2|IPF29663.1|Contig4-2714_0002|Contig4-2714_0003|orf6.45|orf6.6706|YLR422W|CA4216|CaO19.8435|CaO19.815|IPF5806	Putative guanine nucleotide exchange factor required for embedded filamentous growth; activates Rac1p; contains a DOCKER domain; similar to adjacent DCK2 and to S. cerevisiae Ylr422wp; regulated by Nrg1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	854355	854631	+	ntar_359	854355	854631	1	854355	854631					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	854615	857549	-	orf19.814	854615	857549	1	857549	854615	857429	854787	SSY1	orf19.8434|CSY1|IPF5802.2|IPF29641.1|IPF29694.1|Contig4-2714_0007|orf6.6705|SSY1.5|CA4215|orf19.814.3|CaO19.814	Amino acid sensor, required for wild-type hyphal growth on solid serum or Lees media, but not for hyphal growth under all conditions; similar to S. cerevisiae Ssy1p aa sensor and to aa permeases; 12 predicted membrane spanning regions [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	857832	858046	-	snrnau2	857832	858046	1	858046	857832					Highly conserved U2 small nuclear RNA involved in splicing; ortholog of S. cerevisiae LSR1 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	858640	860858	+	orf19.813	858640	860858	1	858640	860858	858692	860770		orf19.8433|IPF26404.1|IPF5799.1|Contig4-2861_0006|orf6.6704|YLR106|CA6180|CaO19.8433|CaO19.813|IPF26404	Predicted ORF in Assemblies 19, 20 and 21; not essential for viability; oxidative stress-induced via Cap1p; similar to S. cerevisiae Vhs3p, which is a putative phosphopantothenoylcysteine decarboxylase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	861107	862480	+	orf19.812	861107	862480	1	861107	862480	861107	862480			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	862641	863981	+	orf19.811	862641	863981	1	862641	863981	862641	863777		orf19.8431|IPF5795|IPF26432.1|IPF5795.2|Contig4-2861_0003|orf6.6702|CA4213|CaO19.811|CaO19.8431	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	863809	864082	-	ntar_360	863809	864082	1	864082	863809					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	864311	868181	+	orf19.810	864311	868181	2	864311|864430	864368|868181	864311	868115		orf19.8430|IPF26490.1|IPF5050.2|Contig4-2861_0001|orf6.6701|CA4212|CaO19.810|HFM1|CaO19.8430	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=Z scenario_last_exon=D]
Ca21chr2	866822	867576	-	ntar_361	866822	867576	1	867576	866822	867031	866822			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	868073	869681	-	orf19.809	868073	869681	1	869681	868073	869597	868233		orf19.8429|IPF26424.1|IPF5051.2|Contig4-2266_0004|orf6.6700|CA4211|CaO19.809|NOP12|CaO19.8429|IPF5052	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	870374	872769	+	orf19.808	870374	872769	1	870374	872769	870747	872579		orf19.8428|IPF18239.1|IPF5056.3|Contig4-2266_0001|Contig4-2544_0011|orf6.2543|orf6.6699|orf6.6698|CA4209|DEP1|CaO19.808|CA4210|DEP1.5f|IPF18238.1|DEP1.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	872991	874901	+	orf19.807	872991	874901	1	872991	874901	873052	874740	CHS5	orf19.8426|IPF19407.2|IPF5058.1|Contig4-2544_0010|orf6.173|orf6.2544|CA1176|CaO19.807|CA4208|CHS5.5eoc|IPF18240.1	Putative chitin biosynthesis protein; fungal-specific (no human or murine homolog); transcription decreases upon yeast-to-hyphal switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	874743	875462	-	orf19.806	874743	875462	1	875462	874743	875340	874972	VMA7	orf19.8424|IPF5059.3|IPF5061.1|Contig4-2544_0008|orf6.175|orf6.2545|CA1177|CaO19.806	Putative subunit of the V-ATPase complex, which is involved in control of vacuolar pH; highly similar to S. cerevisiae Vma7p; interacts with phosphatidylinositol 3-kinase Vps34p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	875595	876659	+	orf19.805	875595	876659	1	875595	876659	875646	876503		orf19.8423|IPF26444.1|IPF5062.1|Contig4-2544_0007|orf6.2546|CA1178|CaO19.805|IPF5062	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	876388	877043	-	orf19.804.1	876388	877043	1	877043	876388	876989	876759			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	877165	878339	-	orf19.804	877165	878339	1	878339	877165	878202	877222		orf19.8422|IPF26439.1|IPF5064.2|Contig4-2544_0004|orf6.2547|CA1179|CaO19.804|CaO19.8422|IPF5064	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	878586	880131	-	orf19.802	878586	880131	1	880131	878586	880090	878675	UGA1	orf19.8421|IPF5067.2|IPF19652.1|IPF19651.1|Contig4-2544_0002|orf6.1355|orf6.2549|orf6.2548|CA1181|CA1180|orf19.803|UGA12.5f	Protein described as GABA transaminase; transcription regulated by Mig1p and Tup1p; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	880839	883648	+	orf19.801	880839	883648	1	880839	883648	880878	883538	TBF1	orf19.8420|IPF5070.2|IPF19724.1|Contig4-2905_0023|orf6.1354|orf6.2550|CA1182|CaO19.801|IPF19724	Essential transcriptional activator that binds to a conserved sequence at ribosomal protein genes and the rDNA locus; acts with Cbf1p at a subset of promoters; biological role is analogous to that of S. cerevisiae Rap1p, not to S.c. Tbf1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	883898	884149	-	ntar_362	883898	884149	1	884149	883898					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	883980	884163	+	ntar_363	883980	884163	1	883980	884163					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	884311	886207	+	orf19.799	884311	886207	1	884311	886207	884534	885907	STE4	orf19.8419|IPF19618.2|IPF29653.1|Contig4-2905_0020|orf6.1139|orf6.1353|CA0438|CaO19.799|STE4.5eoc|IPF19618.1	Beta subunit of heterotrimeric G protein of mating signal transduction pathway; required for mating; transcription is specific to cells homozygous at MTL and is induced by alpha pheromone; similar to S. cerevisiae Ste4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	884493	885497	-	ntar_364	884493	885497	1	885497	884493	885254	885129			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	885604	885901	-	ntar_365	885604	885901	1	885901	885604					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	886008	887690	-	orf19.798	886008	887690	2	887690|886962	887081|886008	887089	886180	TAF14	orf19.8418|IPF26447.1|IPF5074.1|Contig4-2905_0019|orf6.1138|CA0331|ANC1|CaO19.8418|CaO19.798	Putative DNA-binding transcription factor; putative TFIIF subunit; macrophage-induced protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	887743	889227	+	orf19.797	887743	889227	1	887743	889227	887895	889076	BAT21	orf19.8417|IPF19656.1|IPF5075.1|Contig4-2905_0017|orf6.1137|orf6.2997|orf6.2998|CA0330|CaO19.797|BAT2	Protein described as a branched chain amino acid aminotransferase; regulated by Gcn4p, Gcn2p; induced in response to amino acid starvation (3-aminotriazole treatment) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	889067	890538	-	orf19.796	889067	890538	1	890538	889067	890223	889210	HYM1	orf19.8415|IPF17942.2|IPF5076.1|Contig4-2905_0016|orf6.1136|orf6.2996|CA1470|CaO19.796|IPF17942	Mo25 family domain protein of RAM cell wall integrity signaling network; role in cell separation, azole sensitivity; required for hyphal growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	890713	892905	+	orf19.795	890713	892905	1	890713	892905	890821	892818	VPS36	orf19.8414|IPF5078.2|IPF19036.2|Contig4-2905_0015|orf6.1135|orf6.2995|CA1469|CaO19.795|IPF5078	Protein involved in proteolytic activation of Rim101p, which regulates pH response; role in uptake of Histatin-5 into vacuole; similar to S. cerevisiae Vps36p, which is a member of the ESCRT II protein sorting complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	893084	895089	+	orf19.794	893084	895089	1	893084	895089	893154	894980		orf19.8413|IPF26407.1|IPF5080.2|Contig4-2905_0013|orf6.2994|CA1468|SSN3|CaO19.794|CaO19.8413|SRB10	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	895141	896455	+	orf19.793	895141	896455	1	895141	896455	895179	896198	CAK1	orf19.8412|IPF5082.2|IPF29659.1|Contig4-2905_0010|orf6.2993|CA1467|CaO19.793|IPF5082	Monomeric CDK-activating kinase (CAK); functional homolog of S. cerevisiae Cak1p; phosphorylates cyclin-free human CDK2; lacks glycine loop motif; conserved lysine (K36) not required for activity [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	897756	900981	+	orf19.792	897756	900981	2	897756|899561	898775|900981	897896	900774		orf19.8411|IPF19058.1|IPF13324.1|IPF29658.1|Contig4-2905_0005|orf6.2992|orf6.1072|CA1466|orf19.1594|CaO19.8411|CaO19.792|IPF13324	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=C scenario_last_exon=F]
Ca21chr2	898887	899116	+	ntar_366	898887	899116	1	898887	899116	898887	899081			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	899222	900774	+	orf19.791	899222	900774	1	899222	900774	899545	900774	RIM11	orf19.8410|IPF13327.2|IPF26457.1|IPF18668.1|Contig4-2905_0001|orf6.2991|orf6.1071|CA1465|orf19.1593|CaO19.791|RIM111|CaO19.8410	Protein not essential for viability; similar to S. cerevisiae Rim11p, which is a protein kinase involved in meiosis and sporulation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	900819	901888	-	orf19.1592	900819	901888	1	901888	900819	901795	901037		IPF13328.2|orf6.1070|CA0291|CaO19.1592|IPF13328	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	902528	903973	+	orf19.1591	902528	903973	1	902528	903973	902615	903823	ERG10	IPF13331.2|POT14|orf6.1069|CA0290|CaO19.1591	Protein similar to acetyl-CoA acetyltransferase; role in ergosterol biosynthesis; soluble in hyphae; changes in protein abundance associated with azole resistance; fluconazole or ketoconazole induced; macrophage-downregulated protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	904030	905822	+	orf19.1590	904030	905822	1	904030	905822	904041	905822		IPF13333.3|orf6.1068|CA0289|CaO19.1590|IPF13333|IPF13333.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	905790	907140	-	orf19.4521	905790	907140	1	907140	905790	906971	905961		orf19.11996|IPF22746.1|IPF15523.2|Contig4-2054_0005|orf6.4990|CA2906|CaO19.4521|CaO19.11996|IPF15523	Predicted ORF in Assemblies 19, 20 and 21; hyphal-induced expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	907391	907882	+	ntar_367	907391	907882	1	907391	907882	907760	907882			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	907588	908450	-	orf19.4520	907588	908450	1	908450	907588	908353	907778		orf19.11995|IPF22752.1|IPF15525.1|Contig4-2054_0003|orf6.4991|CA2907|CaO19.11995|CaO19.4520|IPF15525	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	908670	911048	-	orf19.4519	908670	911048	1	911048	908670	910930	908768	SUV3	orf19.11994|IPF22739.1|IPF15527.2|orf6.4992|CA2908|CaO19.4519|CaO19.11994	Protein required for chlamydospore formation, for embedded hyphal growth, and for wild-type respiratory growth; similar to S. cerevisiae Suv3p, which is an RNA helicase involved in mitochondrial RNA catabolism [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	911479	914528	+	orf19.4518	911479	914528	1	911479	914528	911560	914463		orf19.11993|IPF11424|IPF22738.1|IPF11424.1|Contig4-2521_0003|Contig4-2521_0005|Contig4-2521_0006|orf6.4993|CA2909|CaO19.4518|CaO19.11993	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	914757	916193	+	orf19.4517	914757	916193	1	914757	916193	914828	916060		orf19.11992|IPF22745.1|IPF11421.1|Contig4-2521_0007|orf6.4994|CA2910|CaO19.11992|CaO19.4517|IPF11421	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	916006	917736	-	orf19.4516	916006	917736	1	917736	916006	917707	916163		orf19.11991|IPF11207.3|IPF11419.2|Contig4-2521_0008|orf6.391|orf6.4995|CA2911|MET7|CaO19.4516	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	917843	919597	+	orf19.4515	917843	919597	1	917843	919597	918785	919528		orf19.11990|IPF11417.1|IPF11206.1|Contig4-2521_0010|orf6.392|orf6.4996|CA2912|CIS303|CaO19.4515|IPF11206	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	920182	922415	+	orf19.4513	920182	922415	1	920182	922415	920896	922086		orf19.11988|IPF11204.3|IPF11205.2|Contig4-2894_0002|orf6.280|orf6.4998|CA2913|CaO19.4513|IPF11205	Protein not essential for viability; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	922591	924837	+	orf19.4511	922591	924837	1	922591	924837	922654	924717		orf19.11987|IPF19361.2|IPF11201.1|Contig4-2894_0006|Contig4-2894_0007|orf6.281|orf6.5000|orf6.4999|CA2915|CA2914|orf19.4512|IFA17.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	925655	927688	+	orf19.4510	925655	927688	1	925655	927688	925655	927688	IFA4	orf19.11986|IPF22740.1|IPF11199.2|Contig4-2894_0009|orf6.5001|CA2916|CaO19.11986|LPF29|CaO19.4510	Predicted ORF in Assemblies 19, 20 and 21; oxidative stress-induced via Cap1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr2	928713	929033	+	orf19.4509	928713	929033	1	928713	929033	928713	929033		orf19.11985|IPF22762.1|IPF16177.2|Contig4-2894_0010|orf6.5002|CA2917|LPF28|CaO19.11985|CaO19.4509|IFA18.5f|IPF16173.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	929054	929727	+	orf19.4508	929054	929727	1	929054	929727	929080	929727		orf19.11984|IPF22750.1|IPF16174.2|Contig4-2894_0011|orf6.5003|CA2918|CaO19.4508|LPF27|CaO19.11984|IFA18.53f|IPF16173.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	929933	930837	+	orf19.4507	929933	930837	1	929933	930837	930016	930831		orf19.11983|IPF22749.1|IPF16173.2|Contig4-2894_0012|orf6.5004|CA2919|LPF26|CaO19.11983|CaO19.4507|IFA18.3f|IFA18.3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	930829	931582	-	ntar_368	930829	931582	1	931582	930829					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	932015	933487	+	orf19.4506	932015	933487	1	932015	933487	932070	933323	LYS22	orf19.11982|IPF18482.1|IPF15851.2|Contig4-2894_0013|orf6.4198|orf6.5005|CA2335|CaO19.4506|LYS211|LYS21	Putative homocitrate synthase; fungal-specific (no human or murine homolog); repressed by nitric oxide; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	935072	935335	-	ntar_369	935072	935335	1	935335	935072					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	935362	936551	+	orf19.4505	935362	936551	1	935362	936551	935624	936472	ADH3	orf19.11981|IPF4795.1|IPF28369.1|Contig4-2894_0019|Contig4-2894_0020|CA2334|SAD3|CaO19.4505|ADH3.3f|orf6.4197	Expression is regulated upon white-opaque switching; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	935652	936425	-	ntar_370	935652	936425	1	936425	935652	936130	935993			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	937472	938664	+	orf19.4504	937472	938664	1	937472	938664	937567	938616		orf19.11980|IPF4794.1|IPF28368.1|orf6.4196|CA2333|SAD2|CaO19.4504|ADH4	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	937811	938274	-	ntar_371	937811	938274	1	938274	937811	938274	938116			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	938793	939613	+	orf19.4503	938793	939613	1	938793	939613	938829	939506		orf19.11979|IPF4792.1|IPF28370.1|Contig4-2993_0022|orf6.4195|CA2332|CaO19.4503|IPF4792	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	940531	946556	+	orf19.4502	940531	946556	1	940531	946556	940777	946524		orf19.11978|IPF22754.1|IPF4789.2|Contig4-2993_0016|orf6.4194|CA2331|CaO19.4502|MOT1|CaO19.11978	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	946848	948355	+	orf19.4499	946848	948355	1	946848	948355	947031	948230	RIM2	orf19.11975|IPF22747.1|IPF4785.2|Contig4-2993_0015|orf6.4191|CA2330|CaO19.11975|CaO19.4499	Protein similar to S. cerevisiae Rim2p; induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	947493	949240	-	orf19.4498	947493	949240	1	949240	947493	949182	948475		orf19.11974|IPF22751.1|IPF4784.1|Contig4-2993_0012|orf6.4190|CA2329|CaO19.11974|CaO19.4498|IPF4784	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	949254	950345	+	orf19.4497	949254	950345	1	949254	950345	949405	950124	MED8	orf19.11973|IPF4783.2|IPF19476.2|Contig4-2993_0011|orf6.30|orf6.4189|CA2328|CaO19.4497	Protein not essential for viability; similar to S. cerevisiae Med8p, which is a subunit of the RNA polymerase II mediator complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	950178	951592	-	orf19.4496	950178	951592	1	951592	950178	951458	950406		orf19.11972|IPF4782.2|IPF19475.2|Contig4-2993_0010|orf6.31|orf6.4188|CA2327|CaO19.4496|IPF4782	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	951966	952273	+	ntar_372	951966	952273	1	951966	952273	952141	952272			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	952333	954234	-	orf19.4495	952333	954234	1	954234	952333	954019	952547	NDH51	orf19.11971|IPF4781.1|IPF4779.3|Contig4-2993_0009|orf6.2956|orf6.4187|CA2326|NUBM|CaO19.11971|CaO19.4495	Subunit of nicotinamide adenine dinucleotide dehydrogenase complex I, of the mitochondrial electron transport chain; required for wild-type filamentous growth; alkaline downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	954526	954832	+	ntar_373	954526	954832	1	954526	954832	954526	954648			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	955166	956677	+	orf19.4494	955166	956677	1	955166	956677	955166	956605	KTR2	orf19.11970|MNT5|IPF18483.2|IPF4778.2|Contig4-2993_0007|orf6.2955|orf6.4186|CA1444|CaO19.4494	Protein with similarity to S. cerevisiae Ktr2p, which is a mannosyltransferase; transcription is elevated in chk1, nik1, and sln1 homozygous null mutants; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	956622	956915	-	ntar_374	956622	956915	1	956915	956622	956915	956739			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	956890	958288	+	orf19.4492	956890	958288	1	956890	958288	956939	958219		orf19.11968|IPF22744.1|IPF4776.2|Contig4-2993_0006|orf6.2953|CA1443|CaO19.4492|EBP2|CaO19.11968|IPF4776	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	958643	959809	+	orf19.4491	958643	959809	1	958643	959809	958692	959747	ERG20	orf19.11967|IPF22748.1|IPF4775.2|Contig4-2993_0004|orf6.2952|CA1442|CaO19.11967|CaO19.4491	Putative farnesyl pyrophosphate synthetase involved in isoprenoid and sterol biosynthesis, based on similarity to S. cerevisiae Erg20p; likely to be essential for growth, based on an insertional mutagenesis strategy [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	959725	960294	-	orf19.4490.2	959725	960294	1	960294	959725	960251	959964	QCR8	IPF22763.1|IPF4774.1|Contig4-2993_0003|CA1441	ORF Predicted by Annotation Working Group; shows colony morphology-related gene regulation by Ssn6p; macrophage/pseudohyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	960915	962041	-	orf19.4490	960915	962041	1	962041	960915	961997	961440	RPL17B	orf19.11966|IPF22753.1|IPF4772.1|Contig4-2993_0002|orf6.2951|CA1440|CaO19.4490|RPL17|CaO19.11966	Predicted ribosomal protein; mutation confers hypersensitivity to 5-FU, tubercidin (7-deazaadenosine); genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated on phagocytosis by macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	962514	964627	+	ntar_1417	962514	964627	2	962514|963437	963320|964627					 [label_first_exon=CGDmod label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	963232	964529	-	ntar_1418	963232	964529	2	964529|964439	964507|963232	964208	963927			 [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=Z scenario_last_exon=C]
Ca21chr2	964910	968536	+	orf19.4488	964910	968536	1	964910	968536	965502	968417		orf19.11964|IPF19603.2|IPF19602.1|Contig4-2699_0008|orf6.2949|orf6.751|CA1439|SWI3|CaO19.4488|IPF19602	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	968379	969291	-	ntar_375	968379	969291	1	969291	968379	968603	968379			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	969575	969741	-	ntar_376	969575	969741	1	969741	969575					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	969586	970436	+	ntar_377	969586	970436	1	969586	970436					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	970688	971016	+	ntar_378	970688	971016	1	970688	971016					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	971259	971725	+	ntar_379	971259	971725	1	971259	971725					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	971654	974945	-	orf19.144	971654	974945	1	974945	971654	974872	971804	SNU114	orf19.7784|IPF16740.2|IPF29942.1|Contig4-2900_0027|orf6.1176|CA0350|CaO19.144	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Snu114p, which is an RNA helicase involved in pre-mRNA splicing [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	975173	976564	-	orf19.145	975173	976564	1	976564	975173	976175	975366	RPB4	orf19.7785|orf19.7786|IPF27151.1|IPF27153.1|IPF19620.1|IPF19621.1|orf6.1177|orf6.1178|CA0351|CA0352|orf19.146|RPB4.3f	Protein similar to S. cerevisiae Rpb4p, which is a component of RNA polymerase II; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	976693	979745	-	orf19.147	976693	979745	1	979745	976693	979332	976903	YAK1	orf19.7787|orf19.7788|IPF27150.1|IPF16042.2|IPF16043.2|IPF19456.2|orf6.1179|orf6.63|orf6.1180|CA0353|CA0354|orf19.148|YAK1.3f	Predicted serine-threonine protein kinase involved in hyphal growth regulation and biofilm formation; induced in core caspofungin response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	980006	980443	+	orf19.149	980006	980443	1	980006	980443	980006	980443		IPF27154.1|IPF29941.1|orf6.62	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	981103	982080	+	orf19.150	981103	982080	1	981103	982080	981178	981642		orf19.7790|IPF16036.1|IPF29940.1|Contig4-1742_0002|orf6.75|CA0010|CaO19.150|TIM17|CaO19.7790|IPF16036	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	982171	984780	-	orf19.151	982171	984780	1	984780	982171	984458	982446	TPO5	orf19.7792|IPF19097.2|IPF17861.2|IPF19195.1|orf6.662|orf6.76|orf6.660|CA0144|CA0143|orf19.153|CaO19.151|IPF19195.3f	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog; hyphal induced; macrophage induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	984861	986133	-	orf19.154	984861	986133	1	986133	984861	986084	984999		orf19.7793|IPF19598.1|IPF19599.1|orf6.659|orf6.940|CA0234|UTP30|CaO19.154|IFA3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	986320	987984	-	orf19.155	986320	987984	1	987984	986320	987521	986487	URE2	orf19.7794|IPF15126.2|IPF19196.2|orf6.658|orf6.939|CA0233|CaO19.155	Functional homolog of S. cerevisiae Ure2p, which is a regulator of nitrogen utilization, and which also has a prion form called [URE3] [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	988114	988471	+	ntar_380	988114	988471	1	988114	988471					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	988361	991024	-	orf19.156	988361	991024	1	991024	988361	990196	988715	FGR51	orf19.7795|orf19.7796|orf19.7825|IPF27149.1|IPF15128.2|IPF27152.1|IPF15129.1|IPF16389.1|IPF19828.2|Contig4-1770_0004|orf6.938|orf6.937|orf6.1144|orf6.196|CA0232|CA6168|CA0335|orf19.157|orf19.195|LPF3|CaO19.7795|CaO19.156|IFA1	Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	991626	993398	+	orf19.194	991626	993398	1	991626	993398	991714	993321		orf19.7824|IPF19562.1|IPF19563.2|Contig4-2639_0010|orf6.1143|orf6.197|CA0334|CaO19.194|IPF19562	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	993340	994444	-	orf19.193	993340	994444	1	994444	993340	994229	993393		orf19.7823|IPF27135.1|IPF14730.2|Contig4-2639_0009|orf6.2966|orf6.1142|CA1449|CaO19.193|IPF14730|IPF14730.5eoc|IPF14730.1	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	995232	997258	+	orf19.192	995232	997258	1	995232	997258	995424	997127		orf19.7822|IPF27132.1|IPF14728.2|Contig4-2639_0004|Contig4-2639_0005|orf6.2965|CA1448|CaO19.7822|CaO19.192|IPF14728	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	997629	1000646	+	orf19.191	997629	1000646	1	997629	1000646	997849	1000524	KIC1	orf19.7821|IPF27130.1|IPF15055.2|Contig4-2639_0001|orf6.2964|CA1447|CaO19.191|CaO19.7821|NRK1	Member of the GCK-III subfamily of eukaryotic Ste20p kinases; in RAM cell wall integrity signaling network; role in cell separation, azole sensitivity; required for hyphal growth; constitutive expression is MTL, white-opaque independent [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1000689	1001822	+	orf19.190	1000689	1001822	1	1000689	1001822	1000848	1001822		orf19.7820|IPF27134.1|IPF15052.3|orf6.2963|CA1446|CaO19.190|CaO19.7820|YAL011|IPF15052.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1001967	1004449	+	orf19.188	1001967	1004449	1	1001967	1004449	1001967	1004417		orf19.7818|IPF13416.3|IPF18673.1|IPF13410.3|orf6.2960|orf6.950|orf6.2961|CA6314|CA0237|orf19.187|CaO19.188|IPF13416.5f|IPF13416|IPF13416.2	Predicted ORF in Assemblies 19, 20 and 21; merged with orf19.187 in Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1004375	1005680	-	orf19.185	1004375	1005680	1	1005680	1004375	1005644	1004538		orf19.7816|IPF13418.1|IPF13417.3|Contig4-1757_0005|orf6.2958|orf6.948|CA1445|MRP51|CaO19.185|IPF13417.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1005838	1007406	-	orf19.184	1005838	1007406	1	1007406	1005838	1007321	1005900		orf19.7814|IPF13419.2|IPF29930.1|Contig4-1757_0003|orf6.2957|orf6.946|CA0236|CaO19.184|MDM10	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1007680	1008438	+	orf19.183	1007680	1008438	1	1007680	1008438	1007761	1008429	HIS3	orf19.7813|IPF13420.2|IPF19395.2|Contig4-2218_0007|orf6.945|CA0235|CaO19.183	Imidazoleglycerol-phosphate dehydratase, enzyme of histidine biosynthesis; functionally complements S. cerevisiae his3-1 mutation; hyphal-induced expression; regulated by Gcn2p and Gcn4p; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1008618	1010185	+	orf19.182	1008618	1010185	1	1008618	1010185	1008679	1010094		orf19.7812|IPF27133.1|IPF27131.1|IPF13421.3|IPF19396.1|Contig4-2218_0006|orf6.195|orf6.944|CA0029|PET56|IPF13421.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1009709	1010578	-	ntar_381	1009709	1010578	1	1010578	1009709	1010578	1010069			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1010469	1010617	-	ntar_382	1010469	1010617	1	1010617	1010469					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1010664	1012129	+	orf19.4128	1010664	1012129	1	1010664	1012129	1010792	1012096		orf19.7811|IPF27136.1|IPF19397.2|IPF13423.2|Contig4-1469_0001|Contig4-2218_0004|orf6.194|orf6.2517|CA1159|orf19.181|CaO19.4128|IPF13423	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1010748	1010993	-	ntar_383	1010748	1010993	1	1010993	1010748					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1013075	1014768	-	orf19.4127	1013075	1014768	2	1014768|1014442	1014521|1013075	1014567	1013161		IPF13275.2|Contig4-2218_0002|orf6.2516|CA1158|IPF13275	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1015883	1017193	+	orf19.4125	1015883	1017193	1	1015883	1017193	1015910	1017148		IPF13278.2|Contig4-2828_0002|orf6.2514|CA1157|CaO19.4125|PZF1	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1016993	1022071	-	orf19.4123	1016993	1022071	1	1022071	1016993	1022071	1017245		IPF10133.2|Contig4-2828_0004|Contig4-2828_0005|Contig4-2828_0007|orf6.2512|CA1156|RLR1|CaO19.4123	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	1022368	1024005	-	orf19.3521	1022368	1024005	1	1024005	1022368	1023958	1023164	ARH2	orf19.11004|IPF23741.1|IPF17908.2|orf6.2034	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1024084	1024155	-	td(guc)5	1024084	1024155	1	1024155	1024084				tD(GUC)5.2	tRNA-Asp predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1024932	1025886	+	ntar_384	1024932	1025886	1	1024932	1025886					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1026295	1026600	+	orf19.3522	1026295	1026600	1	1026295	1026600	1026295	1026600		orf19.11005|IPF17272|IPF19533.2|IPF17272.2|Contig4-1527_0001|Contig4-2828_0015|orf6.2035|CA0860|CaO19.11005|CaO19.3522|IPF17272.3f	Predicted ORF in Assemblies 19, 20 and 21; transcription is downregulated in response to treatment with ciclopirox olamine [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1026601	1027051	-	ntar_385	1026601	1027051	1	1027051	1026601					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1027235	1027305	+	tg(gcc)3	1027235	1027305	1	1027235	1027305				tG(GCC)3.2	tRNA-Gly predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1027412	1029803	-	orf19.3523	1027412	1029803	1	1029803	1027412	1029687	1027450	CRK1	orf19.11006|IPF4453.2|IPF17271.2|Contig4-2828_0017|orf6.2036|orf6.2037|orf6.308|CA0861|CA0862|orf19.3524|CaO19.3523|CRK1.3f	Protein kinase of the Cdc2 kinase subfamily involved in hyphal development and virulence; promotes hyphal development independently of Cph1 and Efg1; functionally complements pheromone hypersensitivity of S. cerevisiae sgv1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1029951	1031983	-	orf19.3526	1029951	1031983	1	1031983	1029951	1031796	1030132	ITR1	orf19.11009|ITR2|IPF23713.1|IPF4456.1|Contig4-2828_0018|orf6.2039|orf6.310|CA0863|HGT15|CaO19.3526	Inositol transporter required for uptake of exogenous inositol; major facilitator superfamily; 12 probable transmembrane motifs; expressed in rich medium with 2% glucose; fluconazole, caspofungin downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1030300	1030555	+	ntar_386	1030300	1030555	1	1030300	1030555					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1032381	1032661	+	ntar_387	1032381	1032661	1	1032381	1032661					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1032672	1034089	-	orf19.3527	1032672	1034089	1	1034089	1032672	1033784	1032918	CYT1	orf19.11011|orf6.1503|orf6.2040|IPF23744.1|IPF4458.2|Contig4-2446_0010|CA0864|CaO19.3527|CA0524|CYT12|IPF18952.1	Protein described as cytochrome c1; transcriptionally regulated by iron; expression greater in high iron; alkaline downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1034385	1035394	-	orf19.3528	1034385	1035394	1	1035394	1034385	1035301	1034873		orf19.11012|IPF4459.2|IPF28737.1|Contig4-2446_0009|orf6.1502|orf6.2041|CA0523|CaO19.3528|IPF4459	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1035615	1035822	-	ntar_388	1035615	1035822	1	1035822	1035615					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1036722	1038554	+	orf19.3529	1036722	1038554	1	1036722	1038554	1036722	1038554	ABP2	orf19.11013|IPF4463.2|IPF28729.1|Contig4-2446_0007|orf6.1501|CA0522|CaO19.3529|CaO19.11013|IPF4463	Protein of unknown function; induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr2	1038560	1039990	-	orf19.3530	1038560	1039990	1	1039990	1038560	1039733	1038744	CKA2	orf19.11014|IPF23734.1|IPF4465.2|Contig4-2446_0005|orf6.1500|CA0521|CaO19.3530|CaO19.11014	Catalytic subunit (alpha-subunit) of protein kinase CK2; interaction with calcineurin pathway to affect fluconazole sensitivity; not essential for viability; synthetically lethal with CKA1; similar to S. cerevisiae Cka2p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1040073	1041130	+	orf19.3531	1040073	1041130	1	1040073	1041130	1040198	1041031		orf19.11015|IPF23736.1|IPF4466.2|Contig4-2446_0002|orf6.1499|CA0520|CaO19.3531|CaO19.11015|IPF4466	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1041018	1041983	-	orf19.3532	1041018	1041983	1	1041983	1041018	1041938	1041087	MRPL10	orf19.11016|IPF19871.1|IPF4468.3|orf6.1498|CA0519|CaO19.3532|CaO19.11016|MRPL10.3	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1042518	1042590	+	tt(agu)4	1042518	1042590	1	1042518	1042590				tT(AGU)4.2	tRNA-Thr predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1042766	1043496	+	orf19.3533	1042766	1043496	1	1042766	1043496	1043020	1043469		orf19.11017|IPF6421.2|IPF4470.2|Contig4-2990_0021|orf6.4279|orf6.607|CA0130|CaO19.3533|CaO19.11017|IPF4470	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1043449	1044542	-	orf19.3534	1043449	1044542	2	1044542|1044184	1044276|1043449	1044306	1043583	RHO3	orf19.11018|IPF6422.1|IPF4472.1|Contig4-2990_0019|orf6.4280|orf6.606|CA2393	Putative Rho family GTPase; possible substrate of protein farnesyltransferase and geranylgeranyltransferase type I; greater transcription in hyphal form than yeast form [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1044693	1045757	-	orf19.3535	1044693	1045757	1	1045757	1044693	1045705	1044839		orf19.11019|IPF6424.1|IPF4474.2|Contig4-2990_0017|orf6.4281|orf6.605|CA2394|CaO19.3535|IPF6424	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1045862	1047425	-	orf19.3536	1045862	1047425	1	1047425	1045862	1047388	1046000		orf19.11020|IPF23723.1|IPF6425.1|Contig4-2990_0016|orf6.4282|CA2395|CaO19.3536|CaO19.11020|IPF6425	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1047769	1048421	-	orf19.3537	1047769	1048421	1	1048421	1047769	1048327	1047929		orf19.11021|IPF23756.1|IPF6428.1|Contig4-2990_0015|orf6.4283|CA2396|CaO19.3537|CaO19.11021|IPF6428	Predicted ORF in Assemblies 19, 20 and 21; regulated by Tsa1p, Tsa1Bp in minimal media at 37 deg [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1049271	1051538	+	orf19.3538	1049271	1051538	1	1049271	1051538	1049271	1051520	FRE9	orf19.11022|CFL12|IPF23706.1|IPF6430.2|CFL98|Contig4-2990_0013|orf6.4284|CA2397|CaO19.3538|CFL8|CaO19.11022	Protein similar to ferric reductase Fre10p; alkaline upregulated; ciclopirox olamine induced; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	1051534	1052887	-	orf19.3539	1051534	1052887	1	1052887	1051534	1052802	1051816		orf19.11023|IPF23732.1|IPF6431.2|Contig4-2990_0011|orf6.4285|CA2398|CaO19.11023|CaO19.3539|IPF6431	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1052953	1055550	+	orf19.3540	1052953	1055550	1	1052953	1055550	1053006	1055354	MAK5	orf19.11024|IPF23705.1|IPF6433.2|Contig4-2990_0009|orf6.4286|CA2399|CaO19.3540|CaO19.11024	Predicted ORF in Assemblies 19, 20 and 21; oxidative stress-repressed via Cap1p; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1055351	1056866	-	orf19.3541	1055351	1056866	1	1056866	1055351	1056790	1055480	ERF1	orf19.11025|IPF23726.1|IPF6434.1|Contig4-2990_0007|orf6.4287|CA2400|SUP45|CaO19.11025|CaO19.3541	Putative translation release factor 1, which interacts with stop codons and promotes release of nascent peptides from ribosomes [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1057042	1058820	+	orf19.3542	1057042	1058820	1	1057042	1058820	1057098	1058417	LEM3	orf19.11026|IPF23722.1|IPF6435.1|Contig4-2990_0004|orf6.4288|CA2401|CaO19.3542|CaO19.11026	Predicted ORF in Assemblies 19, 20 and 21; mutation causes increased resistance to miltefosine [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1058455	1058799	-	orf19.3543	1058455	1058799	1	1058799	1058455	1058799	1058455			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1058923	1060101	-	ntar_389	1058923	1060101	1	1060101	1058923	1059931	1059761			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1058999	1060174	+	orf19.3544	1058999	1060174	1	1058999	1060174	1059033	1060151		orf19.11028|IPF23729.1|IPF6438.1|Contig4-2990_0001|orf6.4290|CA2403|CaO19.3544|CaO19.11028|IPF6438	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1060351	1063844	+	orf19.3545	1060351	1063844	1	1060351	1063844	1060401	1063781		orf19.11029|IPF6439.3|IPF28743.1|Contig4-2204_0004|orf6.4291|orf6.4656|CA2404|CDC15|CaO19.3545|SEP|CA2669|IPF17494.3eoc|IPF17494.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1063940	1065347	+	orf19.3546	1063940	1065347	1	1063940	1065347	1064025	1065287		orf19.11030|IPF23725.1|IPF17553.2|Contig4-2204_0003|orf6.4655|CA2668|PEX2|CaO19.3546|CaO19.11030|IPF17553	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1065269	1067343	-	orf19.3547	1065269	1067343	1	1067343	1065269	1067309	1065306		orf19.11031|IPF23709.1|IPF16996.2|Contig4-2204_0001|orf6.4654|CA2667|CaO19.11031|CaO19.3547|IPF16996	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1067501	1068433	+	orf19.3548	1067501	1068433	1	1067501	1068433	1067541	1068212		orf19.11032|IPF23738.1|IPF16995.2|orf6.4653|CA2666|CaO19.3548|CaO19.11032|IPF16995	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1068915	1069409	+	orf19.3548.1	1068915	1069409	1	1068915	1069409	1069064	1069261	WH11	IPF23703.1|IPF13362.2|Contig4-1753_0002	Cytoplasmic protein expressed specifically in white phase yeast-form cells; expression in opaque cells increases virulence and frequency of opaque-to-white switching; null mutant shows wild-type switching; similar to S. cerevisiae Hsp12p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1069604	1070636	+	orf19.3549	1069604	1070636	1	1069604	1070636	1069634	1070581	CDC21	orf19.11033|TMP1|IPF19442.2|IPF13364.2|Contig4-1753_0001|orf6.102|orf6.4652|CA2665|CaO19.3549|CaO19.11033	Predicted ORF in Assemblies 19, 20 and 21; flucytosine induced; transcription is downregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1070565	1072113	-	orf19.3550	1070565	1072113	1	1072113	1070565	1072037	1070682	SGO1	orf19.11034|IPF13368.3|IPF28734.1|Contig4-1753_0003|orf6.103|orf6.4651|CA0014|CaO19.3550|IPF13368|IPF13368.2	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1072209	1073071	+	orf19.3551	1072209	1073071	1	1072209	1073071	1072240	1072617		IPF13367.3|IPF13370.2|orf6.4650|CA2664|CaO19.3551|IPF13370	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1072526	1075874	-	orf19.3552	1072526	1075874	1	1075874	1072526	1075769	1072671		orf19.11035|IPF23764.1|IPF13373.2|Contig4-1650_0003|orf6.4649|CA2663|NUP133|CaO19.3552|CaO19.11035	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1076045	1077201	-	orf19.3553	1076045	1077201	1	1077201	1076045	1077167	1076184	RPF2	orf19.11036|IPF23733.1|IPF17139.2|Contig4-1650_0001|orf6.4648|CA2662|CaO19.3553|CaO19.11036|IPF17139	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1077471	1077556	-	tq(uug)3	1077471	1077556	2	1077556|1077505	1077519|1077471				tQ(UUG)3.2	tRNA-Gln predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1077636	1079228	-	orf19.3554	1077636	1079228	1	1079228	1077636	1079143	1077830	AAT1	orf19.11037|IPF18970.2|IPF14258.2|Contig4-2239_0001|Contig4-2239_0002|orf6.1447|orf6.4647|CA2661|CaO19.3554	Protein described as aspartate aminotransferase; soluble protein in hyphae; macrophage-induced protein; alkaline upregulated; amphotericin B repressed; gene used for strain identification by multilocus sequence typing, farnesol-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1080136	1080374	+	ntar_390	1080136	1080374	1	1080136	1080374					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1082482	1082678	+	ntar_391	1082482	1082678	1	1082482	1082678					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1083510	1086320	+	orf19.3555	1083510	1086320	1	1083510	1086320	1083888	1086293		orf19.11038|IPF17574.2|IPF16659.3|Contig4-2581_0007|orf6.1448|orf6.4646|orf6.837|CA0485|CaO19.3555|IPF17574	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1086588	1089848	+	orf19.3556	1086588	1089848	1	1086588	1089848	1086748	1089594		orf19.11040|IPF23708.1|IPF16463.2|Contig4-1675_0003|orf6.1449|orf6.836|CA0199|CaO19.3556|KAP104	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1089710	1090805	-	orf19.3557	1089710	1090805	1	1090805	1089710	1090805	1089909		orf19.11041|IPF3180.2|IPF19128.2|Contig4-1675_0002|orf6.1605|orf6.835|CA0582|CaO19.3557|IPF3180	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1090856	1091631	-	orf19.3558	1090856	1091631	1	1091631	1090856	1091497	1090856		orf19.11042|IPF23742.1|IPF3181.2|Contig4-1675_0001|orf6.1604|CA0581|CaO19.3558|ERP3|CaO19.11042|IPF3181	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1091779	1093149	-	orf19.3559	1091779	1093149	2	1093149|1092328	1092611|1091779	1093099	1091873		orf19.11043|orf19.11044|IPF23746.1|IPF23749.1|IPF3184.1|IPF3182.1|Contig4-2222_0002|Contig4-2222_0003|orf6.1603|orf6.1602|CA0579|orf19.3560|IPF3184|CA0580|IPF3184.exon2|IPF3184.exon1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1093450	1095656	+	orf19.3561	1093450	1095656	1	1093450	1095656	1093604	1095574	CDC7	orf19.11045|IPF19636.2|IPF19635.2|Contig4-3023_0026|orf6.1601|orf6.5768|CA3493|CaO19.3561|IPF19635.1	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression; S. cerevisiae ortholog is not cell-cycle regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1095678	1097421	-	orf19.3563	1095678	1097421	1	1097421	1095678	1097408	1095735		orf19.11047|IPF3189|IPF23714.1|IPF3189.1|Contig4-3023_0025|orf6.5766|CA3492|CaO19.3563|CaO19.11047	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1097782	1099094	-	orf19.3564	1097782	1099094	1	1099094	1097782	1099029	1098019	RPC40	orf19.11048|IPF23728.1|IPF3191.1|Contig4-3023_0023|orf6.5765|CA3491|CaO19.11048|CaO19.3564	Predicted ORF in Assemblies 19, 20 and 21; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1099295	1100468	-	orf19.3565	1099295	1100468	1	1100468	1099295	1100407	1099547		orf19.11049|IPF23737.1|IPF3192.1|Contig4-3023_0022|orf6.5764|CA3490|CaO19.11049|CaO19.3565|IPF3192	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1100622	1102160	-	orf19.3567	1100622	1102160	1	1102160	1100622	1102082	1100622	BIO32	orf19.11051|IPF23721.1|IPF3195.1|Contig4-3023_0021|orf6.5762|CA3489|CaO19.3567|CaO19.11051|IPF3195	Predicted ORF in Assemblies 19, 20 and 21; induced during planktonic growth [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr2	1102442	1104530	-	orf19.3568	1102442	1104530	1	1104530	1102442	1104197	1102641	RXT3	orf19.11052|IPF23717.1|IPF3198.2|Contig4-3023_0020|orf6.5761|CA3488|CaO19.11052|CaO19.3568|IPF3198	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1106030	1108121	+	orf19.3569	1106030	1108121	1	1106030	1108121	1106693	1107811		orf19.11053|IPF23730.1|IPF3203.2|Contig4-3023_0017|orf6.5760|CA3487|YLR407w|CaO19.11053|CaO19.3569|IPF3203	Predicted ORF in Assemblies 19, 20 and 21; constitutive expression independent of MTL or white-opaque status [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1107795	1108520	-	orf19.3571	1107795	1108520	1	1108520	1107795	1108503	1108087		orf19.11055|IPF23754.1|IPF3204.1|Contig4-3023_0016|orf6.5758|CaO19.3571|CaO19.11055	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1108672	1110051	+	orf19.3572	1108672	1110051	1	1108672	1110051	1108751	1110046		orf19.11056|IPF23727.1|IPF3206.1|Contig4-3023_0015|orf6.5757|CA3486|CaO19.3572|CaO19.11056|IPF3206	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1109027	1109219	-	ntar_392	1109027	1109219	1	1109219	1109027					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1109635	1110052	-	ntar_393	1109635	1110052	1	1110052	1109635					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1110395	1111749	+	orf19.3572.3	1110395	1111749	2	1110395|1111064	1110581|1111749	1110528	1111348		IPF23702.1|IPF3208.1|Contig4-3023_0009	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1111558	1112050	-	ntar_1427	1111558	1112050	2	1112050|1111686	1111986|1111558					 [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1112294	1112380	-	ti(aau)3	1112294	1112380	2	1112380|1112329	1112343|1112294				tI(AAU)3.2	tRNA-Ile predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1112810	1116477	+	orf19.3573	1112810	1116477	1	1112810	1116477	1112926	1116399		orf19.11057|IPF23761.1|IPF3213.2|Contig4-3023_0005|Contig4-3023_0006|orf6.5756|CA3485|PEX6|CaO19.3573|CaO19.11057|IPF3213	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1116468	1117283	-	orf19.3574	1116468	1117283	1	1117283	1116468	1117170	1116739		orf19.11058|IPF23751.1|IPF3214.1|Contig4-3023_0004|orf6.5755|CA3484|MDJ2|CaO19.11058|CaO19.3574|IPF3214	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1117517	1118289	-	ntar_394	1117517	1118289	1	1118289	1117517	1118267	1118136			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1118680	1120407	+	orf19.3575	1118680	1120407	1	1118680	1120407	1118746	1120260	CDC19	orf19.11059|PYK1|IPF23718.1|IPF19988.1|Contig4-3023_0002|Contig4-3023_0003|orf6.5754|CA3483|CaO19.3575|CaO19.11059	Putative pyruvate kinase; on yeast-form cell surface; soluble in hyphae; antigenic; Gcn4p, Hog1p regulated; induced on polystyrene adherence; downregulated upon phagocytosis, farnesol treatment; mutation affects filamentation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1120580	1121656	+	orf19.3577	1120580	1121656	1	1120580	1121656	1120618	1121538	COQ5	orf19.11061|IPF23735.1|IPF3222.1|Contig4-3023_0001|orf6.5752|CA3482|CaO19.3577|CaO19.11061	Protein described as methyltransferase of ubiquinone biosynthesis; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment); induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1121577	1122064	-	orf19.3577.1	1121577	1122064	1	1122064	1121577	1121940	1121686		IPF23701.1|IPF3223.1|CA3481|IPF3223	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1122025	1122610	+	orf19.3578	1122025	1122610	1	1122025	1122610	1122114	1122560		orf19.11062|IPF23750.1|IPF3224.1|orf6.5751|CA3480|CaO19.11062|CaO19.3578|IPF3224	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1122750	1123596	+	orf19.3579	1122750	1123596	1	1122750	1123596	1122782	1123483	ATP4	orf19.11063|IPF23739.1|IPF3225.1|Contig4-2234_0001|orf6.5750|CA3479|CaO19.11063|CaO19.3579	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1123496	1124943	-	orf19.3581	1123496	1124943	1	1124943	1123496	1124918	1123611		orf19.11065|IPF23724.1|IPF3227.1|Contig4-2234_0002|orf6.5748|CA3478|CaO19.3581|MSI1|CaO19.11065|IPF3227	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1125255	1126257	+	orf19.3582	1125255	1126257	2	1125255|1125448	1125388|1126257	1125339	1126138		orf19.11066|IPF23740.1|IPF3229.1|Contig4-2234_0003|orf6.5747|CA3477|CaO19.11066|CaO19.3582|IPF3229	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1125897	1127444	-	orf19.3583	1125897	1127444	1	1127444	1125897	1127371	1126214		orf19.11067|IPF23731.1|IPF3232.2|orf6.5746|CA3476|CaO19.3583|YRB2|CaO19.11067|YRB2.3eoc|NUP2.3eoc	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1127551	1128872	-	orf19.6866	1127551	1128872	2	1128872|1128713	1128790|1127551	1128792	1127673		orf19.14156|IPF8044|IPF20238.1|IPF8044.2|Contig4-3086_0001|orf6.7130|CA4556|U1-70K	Putative U1-70K component of the U1 snRNP, involved in splicing; ortholog of S. cerevisiae SNP1; downregulated upon adherence to polystyrene; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1128951	1129715	+	orf19.6867	1128951	1129715	1	1128951	1129715	1129080	1129469		IPF20253.1|IPF8043.1|Contig4-3086_0003|orf6.7131|CA4557|CaO19.6867|IPF8043	Predicted ORF in Assemblies 19, 20 and 21; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1129761	1130943	+	orf19.6868	1129761	1130943	1	1129761	1130943	1129825	1130841		orf19.14157|IPF20237.1|IPF8042.1|Contig4-3086_0005|orf6.7132|CA4558|CaO19.14157|GRE24|CaO19.6868|GRP5	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1130851	1132231	-	orf19.6869	1130851	1132231	1	1132231	1130851	1132002	1130953		orf19.14158|IPF20236.1|IPF8041.1|Contig4-3086_0006|orf6.7133|CA4559|CaO19.6869|BZD98|CaO19.14158|IPF8041	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1134927	1139253	+	orf19.6871	1134927	1139253	1	1134927	1139253	1135090	1139148		orf19.14160|IPF20248.1|IPF8038.2|Contig4-3086_0013|orf6.7135|CA4560|CaO19.14160|CaO19.6871|IPF8038	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1139235	1140512	-	orf19.6872	1139235	1140512	1	1140512	1139235	1140248	1139328		orf19.14161|IPF20239.1|IPF8031.2|Contig4-3086_0014|orf6.7136|CA4561|CaO19.6872|CaO19.14161|IPF8031	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1141109	1141513	+	ntar_395	1141109	1141513	1	1141109	1141513					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1141564	1142796	-	orf19.6873	1141564	1142796	2	1142796|1142399	1142765|1141564	1142393	1141773	RPS8A	orf19.14162|IPF20242.1|IPF6565.2|Contig4-3086_0015|orf6.7137|CA4562|RPS8|CaO19.6873|CaO19.14162	Putative ribosomal protein; similar to S. cerevisiae Rps8Bp; gene is induced by ciclopirox olamine treatment; genes encoding cytoplasmic ribosomal subunits are downregulated upon phagocytosis by murine macrophage; intron in 5'-UTR [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1143198	1143882	+	orf19.6873.1	1143198	1143882	1	1143198	1143882	1143299	1143511		IPF20221.1|IPF6566.1|Contig4-3086_0017|CA4563|IPF6566	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1143939	1144020	-	ts(aga)4	1143939	1144020	1	1144020	1143939				tS(AGA)4.2	tRNA-Ser predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1149754	1152305	+	orf19.6874	1149754	1152305	1	1149754	1152305	1150098	1151921		orf19.14163|IPF20227.1|IPF6572.2|Contig4-3086_0028|orf6.7138|CA4564|BAS1|CaO19.6874|CaO19.14163|IPF6572	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1152553	1155706	+	orf19.6875	1152553	1155706	1	1152553	1155706	1152671	1155505	VPS35	orf19.14164|IPF20219.1|IPF6573.1|Contig4-3086_0031|orf6.7139|CA4565|CaO19.6875|CaO19.14164	Putative role in vacuolar sorting; downregulated in biofilm; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1155977	1156267	-	ntar_396	1155977	1156267	1	1156267	1155977					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1156829	1160245	+	orf19.6877	1156829	1160245	1	1156829	1160245	1157113	1160064		PNG2|orf19.14166|IPF20218.1|IPF19801.1|Contig4-3086_0035|orf6.7141|CA4566|CaO19.14166|CaO19.6877|IPF19801	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in response to treatment with caspofungin, ciclopirox olamine or ketoconazole; gene of core caspofungin response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1160117	1161118	-	orf19.6879	1160117	1161118	1	1161118	1160117	1161071	1160271		orf19.14168|IPF20240.1|IPF9555.1|Contig4-3086_0036|orf6.7143|CA4567|CaO19.6879|SEN34|CaO19.14168|IPF9555	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1161271	1164212	+	orf19.6880	1161271	1164212	1	1161271	1164212	1161404	1164073		orf19.14169|IPF20224.1|IPF9554.1|Contig4-3086_0037|orf6.7144|CA4568|COG4|CaO19.14169|CaO19.6880|IPF9554	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1164106	1164971	-	orf19.6881	1164106	1164971	1	1164971	1164106	1164808	1164161	YTH1	orf19.14170|IPF20241.1|IPF9552.1|Contig4-3086_0038|orf6.7145|CA4569|CaO19.6881|CaO19.14170|IPF9552	Protein described as an mRNA cleavage and polyadenylation specificity factor; transcription is regulated upon yeast-hyphal switch; decreased expression in hyphae compared to yeast-form cells; fluconazole or flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1165272	1167102	+	orf19.6882	1165272	1167102	1	1165272	1167102	1165501	1167012	OSM1	orf19.14171|IPF20231.1|IPF9550.1|Contig4-3086_0042|orf6.7146|CA4570|CaO19.14171|CaO19.6882|IPF9550	Putative flavoprotein subunit of fumarate reductase; soluble protein in hyphae; fungal-specific (no human or murine homolog); caspofungin repressed; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1166955	1168213	-	orf19.6882.1	1166955	1168213	2	1168213|1167600	1168057|1166955	1168075	1167296		IPF20254.1|IPF9548.1|Contig4-3086_0043|CA4571|RPL33|RPL33.3	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1168432	1170127	-	orf19.6883	1168432	1170127	1	1170127	1168432	1169839	1168547		orf19.14172|IPF20234.1|IPF9434.2|orf6.7147|CA4572|CaO19.6883|KES1|CaO19.14172	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1170218	1172256	-	orf19.6884	1170218	1172256	1	1172256	1170218	1171859	1170402		orf19.14173|IPF20233.1|IPF9431.1|Contig4-2670_0004|orf6.7148|CA4573|GWT1|CaO19.6884|CaO19.14173|IPF9431	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1172364	1174269	+	orf19.6885	1172364	1174269	1	1172364	1174269	1172595	1174139	SPO7	orf19.14174|IPF20230.1|IPF9430.2|Contig4-2670_0007|orf6.7149|CA4574|CaO19.6885|CaO19.14174|IPF9430	Protein similar to S. cerevisiae Spo7p; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1174575	1176053	+	orf19.6886	1174575	1176053	1	1174575	1176053	1174647	1175897		orf19.14175|IPF20235.1|IPF9428.2|Contig4-2670_0008|orf6.7150|CA4575|CaO19.6886|CaO19.14175|IPF9428	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1175855	1176487	-	orf19.6887	1175855	1176487	1	1176487	1175855	1176415	1176083		orf19.14176|orf6.7151|CaO19.14176|CaO19.6887	Predicted ORF from Assembly 19; repressed by nitric oxide; removed from Assembly 20; subsequently reinstated in Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1178328	1179952	+	orf19.6888	1178328	1179952	2	1178328|1178504	1178393|1179952	1178328	1179766		orf19.14177|orf6.7152|IPF19437.2|IPF9425.2|Contig4-2509_0013|Contig4-2670_0012|orf6.122|CA4576|CaO19.6888|ZFU3|IPF9425.3	Protein with Gal4p-like DNA-binding domain; gene transcription regulated by Mig1p and Tup1p [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=Z scenario_last_exon=G]
Ca21chr2	1180400	1182050	-	orf19.6889	1180400	1182050	1	1182050	1180400	1181854	1180514	MKK2	orf19.14178|IPF9424.3|IPF14309.2|Contig4-2509_0011|orf6.121|orf6.7153|CA4577|CaO19.6889	Protein not essential for viability; similar to S. cerevisiae Mkk2p, which is a MAP kinase kinase involved in signal transduction; macrophage-downregulated gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1182464	1185333	-	orf19.6891	1182464	1185333	2	1185333|1185190	1185256|1182464	1185303	1182572	RFC1	orf19.14180|IPF19208.2|IPF14308.2|Contig4-2509_0005|Contig4-2509_0007|orf6.632|orf6.7155|CA4578	Protein likely to be essential for growth, based on an insertional mutagenesis strategy; similar to S. cerevisiae Rfc1, which is a subunit of DNA replication factor C [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1185723	1187304	-	orf19.6893	1185723	1187304	1	1187304	1185723	1187214	1185853		orf19.14182|IPF17098.1|IPF14300.2|Contig4-2509_0001|orf6.630|orf6.7157|orf6.7158|CA6307|CA0139|orf19.6894|RUD3.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1189226	1190956	+	orf19.5204	1189226	1190956	1	1189226	1190956	1189319	1190956		orf19.12671|orf19.14183|IPF22006.1|IPF13971.2|IPF20250.1|IPF18198.1|Contig4-2237_0001|orf6.3447|orf6.7159|CA1790|orf19.6895|CaO19.12671|CaO19.5204|IPF13971	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=H scenario_last_exon=H]
Ca21chr2	1191685	1193410	+	orf19.5205	1191685	1193410	1	1191685	1193410	1191791	1193236		orf19.12672|IPF22008.1|IPF13967.2|Contig4-2237_0004|orf6.3448|CA1791|CaO19.5205|CaO19.12672|IPF13967	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1192756	1194832	-	orf19.5206	1192756	1194832	1	1194832	1192756	1194799	1193270		orf19.12673|IPF22007.1|IPF13966.2|Contig4-2237_0005|orf6.3449|CA1792|CaO19.12673|CaO19.5206|IPF13966	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1194941	1196453	+	orf19.5207	1194941	1196453	1	1194941	1196453	1194984	1196264		orf19.12674|orf19.12675|IPF22014.1|IPF22015.1|IPF18608.1|Contig4-3052_0031|orf6.3450|orf6.3451|CA1793|CA1794|orf19.5208|IPF18608.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1196131	1198624	-	orf19.5209	1196131	1198624	1	1198624	1196131	1198572	1196257		orf19.12676|IPF21999.1|IPF11261.2|Contig4-3052_0001|orf6.3452|CA1795|COG6|CaO19.12676|CaO19.5209|IPF11261	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1198860	1200667	-	orf19.5210	1198860	1200667	1	1200667	1198860	1200658	1198925		orf19.12677|IPF22005.1|IPF11259.2|Contig4-3052_0003|orf6.3453|CA1796|CaO19.5210|XBP1|CaO19.12677|IPF11259	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1200847	1201081	-	ntar_397	1200847	1201081	1	1201081	1200847					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1204022	1204562	+	orf19.5210.1	1204022	1204562	2	1204022|1204394	1204330|1204562	1204193	1204522			 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1204447	1205923	-	orf19.5211	1204447	1205923	1	1205923	1204447	1205852	1204551	IDP1	orf19.12678|IPF22009.1|IPF5863.2|Contig4-3052_0006|Contig4-3052_0007|orf6.3902|CA2131|CaO19.5211|CaO19.12678	Protein described as isocitrate dehydrogenase; transcriptionally induced by interaction with macrophage; alkaline upregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1206499	1207661	+	orf19.5212	1206499	1207661	2	1206499|1206703	1206640|1207661	1206499	1207661		orf19.12679|IPF22011.1|IPF5865.2|Contig4-3052_0008|orf6.3903|CA2132|IPF5865	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1208069	1211114	+	orf19.5213	1208069	1211114	1	1208069	1211114	1208528	1210972		orf19.12680|IPF21998.1|IPF5866.2|Contig4-3052_0009|orf6.3904|CA2133|CaO19.12680|CaO19.5213|IPF5866	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1211037	1211577	-	orf19.5213.1	1211037	1211577	1	1211577	1211037	1211519	1211238	COX8	IPF22018.1|IPF5867.1|Contig4-3052_0010|CA2134	ORF Predicted by Annotation Working Group; flucytosine induced; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1211829	1212297	+	orf19.5213.2	1211829	1212297	1	1211829	1212297	1211893	1212078	COX9	orf19.12680.2|IPF22003.1|IPF5868.1|Contig4-3052_0012|CA2135	Putative subunit VIIa of cytochrome c oxidase; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1212198	1214457	-	orf19.5214	1212198	1214457	1	1214457	1212198	1214402	1212306	VPS33	orf19.12681|IPF22002.1|IPF5870.2|Contig4-3052_0015|Contig4-3052_0016|orf6.3905|CA2136|CaO19.12681|CaO19.5214	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Vps33p, which is the product of a class C vacuolar protein sorting (vps) gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1214644	1215805	-	orf19.5215	1214644	1215805	1	1215805	1214644	1215750	1214689	TES15	orf19.12682|IPF22010.1|IPF5871.2|Contig4-3052_0018|orf6.3906|CA6220|CaO19.5215|TES5|CaO19.12682	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1216054	1217144	-	orf19.5216	1216054	1217144	1	1217144	1216054	1217011	1216115		orf19.12683|IPF22013.1|IPF5873.2|Contig4-3052_0020|orf6.3907|CA6221|TES4|CaO19.5216|CaO19.12683|TES14	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1217465	1218735	-	orf19.5217	1217465	1218735	1	1218735	1217465	1218631	1217735	TES1	orf19.12684|IPF22012.1|IPF5876.2|Contig4-3052_0022|orf6.3908|CA6222|CaO19.5217|TES3|CaO19.12684|TES13	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1219063	1220235	-	orf19.4122	1219063	1220235	1	1220235	1219063	1220133	1219153		orf19.12685|orf19.11605|IPF23166.1|IPF5877.2|IPF22017.1|IPF18535.1|Contig4-3052_0024|orf6.3191|orf6.3909|CA1608|orf19.5218|TES2|CaO19.4122|TES12	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1221356	1222701	-	orf19.4121	1221356	1222701	1	1222701	1221356	1222609	1221455		orf19.11603|IPF23150.1|IPF5879.2|Contig4-3052_0027|orf6.3192|CA1609|TES1|CaO19.11603|CaO19.4121|TES11	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1223164	1224899	+	orf19.4120	1223164	1224899	1	1223164	1224899	1223378	1224856	LAS1	orf19.11602|IPF23142.1|IPF5882.2|Contig4-3052_0028|orf6.3193|CA1610|CaO19.4120|CaO19.11602	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU); macrophage-induced gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1225226	1231170	+	orf19.4119	1225226	1231170	1	1225226	1231170	1225442	1231012	SPO72	orf19.11601|IPF23167.1|IPF12198.2|Contig4-2495_0008|orf6.3194|CA1611|ATG2|CaO19.4119|CaO19.11601	Protein similar to S. cerevisiae sporulation protein; up-regulation associated with azole resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1232558	1234668	+	orf19.4118	1232558	1234668	1	1232558	1234668	1232842	1234668	CNT	orf19.11600|NNT1|IPF12201|IPF12201.2|IPF2129.3|Contig4-2495_0005|orf6.6818|orf6.804|CA0189|NNT99|CaO19.4118	Cation-coupled nucleoside transporter (H(+)/nucleoside symporter); CNT family; transports adenosine, uridine, inosine, guanosine, tubercidin; variant alleles encode high- and low-affinity isoforms; S or G at residue 328 affects specificity [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1234865	1236445	+	orf19.4117	1234865	1236445	1	1234865	1236445	1234911	1236344		orf19.11599|IPF2127.3|IPF23159.1|IPF2127.2|Contig4-2528_0002|orf6.6819|orf6.805|CA4309|CaO19.4117	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1236255	1237905	-	orf19.4116	1236255	1237905	1	1237905	1236255	1237627	1236356		orf19.11597|IPF2125|IPF23145.1|IPF2125.2|Contig4-2528_0003|orf6.6820|CA4310|CaO19.4116|CaO19.11597	Protein not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1237930	1238003	-	tm(cau)3	1237930	1238003	1	1238003	1237930				tM(CAU)3.2	tRNA-Met predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1238541	1238873	-	orf19.4115	1238541	1238873	1	1238873	1238541	1238873	1238541		orf19.11596|IPF23175.1|IPF28528.1|Contig4-2528_0004|orf6.6821|CaO19.11596|CaO19.4115	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1239011	1241424	+	orf19.4114	1239011	1241424	1	1239011	1241424	1239137	1241290	FAA2-1	orf19.11595|IPF23135.1|IPF2123.2|Contig4-2528_0006|orf6.6822|CA4311|FAA23|CaO19.4114|FAA22|CaO19.11595	Predicted long chain fatty acid CoA ligase; upregulated upon phagocytosis; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1241349	1242562	-	orf19.4112	1241349	1242562	1	1242562	1241349	1242471	1241554		orf19.11593|IPF23154.1|IPF2122.2|Contig4-2528_0007|orf6.6824|CA4312|CaO19.11593|CaO19.4112|IPF2122	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1242653	1245923	+	orf19.4110	1242653	1245923	1	1242653	1245923	1242656	1245784		orf19.11591|IPF23186.1|IPF2121.2|Contig4-2950_0020|orf6.6826|CA4313|CaO19.4110|CaO19.11591|IPF2121	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1246095	1248544	+	orf19.4109	1246095	1248544	1	1246095	1248544	1246154	1248421	PMT4	orf19.11590|IPF23133.1|IPF2115.1|Contig4-2950_0002|orf6.6827|CA4314|CaO19.4109|CaO19.11590	Protein mannosyltransferase required for normal cell wall composition and full virulence in mouse systemic infection; has roles in hyphal growth and drug sensitivity; one of 5 PMT family members; Axl2p is a substrate [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1248635	1250131	+	orf19.4107	1248635	1250131	1	1248635	1250131	1248733	1249938		orf19.11588|IPF23148.1|IPF2112.1|Contig4-2950_0003|orf6.6829|CA4315|CaO19.11588|PPX1|CaO19.4107	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1249637	1250990	-	orf19.4106	1249637	1250990	1	1250990	1249637	1250990	1249944		orf19.11587|IPF23151.1|IPF2111.1|Contig4-2950_0005|orf6.6830|CA4316|CaO19.4106|CaO19.11587|IPF2111	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	1251151	1252265	+	orf19.4105	1251151	1252265	1	1251151	1252265	1251180	1252130		orf19.11586|IPF23153.1|IPF2109.1|Contig4-2950_0006|orf6.6831|CA4317|CaO19.4105|CaO19.11586|IPF2109	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1252155	1253759	-	orf19.4104	1252155	1253759	1	1253759	1252155	1253759	1252155		orf19.11585|IPF23140.1|IPF2106.2|Contig4-2950_0009|orf6.6832|CA4318|CaO19.11585|CaO19.4104|IPF2106	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1253966	1254973	-	orf19.4102	1253966	1254973	1	1254973	1253966	1254864	1254025	RPN10	orf19.11583|IPF23155.1|IPF2104.2|Contig4-2950_0011|orf6.6834|CA4319|CaO19.11583|CaO19.4102	Predicted ORF in Assemblies 19, 20 and 21; macrophage/pseudohyphal-repressed; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1255116	1255670	+	orf19.4101	1255116	1255670	1	1255116	1255670	1255179	1255487		orf19.11582|IPF23185.1|IPF2103.1|Contig4-2950_0015|orf6.6835|CaO19.11582|CaO19.4101	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1255595	1260098	-	orf19.4099	1255595	1260098	1	1260098	1255595	1260036	1255723	ECM17	orf19.11580|orf19.12932|MET5|IPF23129.1|IPF2102.1|IPF21658.1|IPF13588.2|Contig4-2950_0017|orf6.6837|orf6.4171|CA4320|orf19.5477|CaO19.4099|CaO19.11580	Predicted enzyme of sulfur amino acid biosynthesis; putative role in regulation of cell wall biogenesis; upregulated in biofilm; possibly adherence-induced; regulated by Tsa1p, Tsa1Bp under H2O2 stress; Gcn4p-regulated; Tbf1p-activated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1260637	1261785	-	orf19.5479	1260637	1261785	1	1261785	1260637	1261785	1260637	FGR12	orf19.12934|IPF21669.1|IPF13586.2|Contig4-2950_0018|orf6.4173|CA2317|CaO19.12934|CaO19.5479|IPF13586	[NOT TRANSCRIBED?] Protein lacking an ortholog in S. cerevisiae; transposon mutation affects filamentous growth [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1262881	1264865	+	orf19.5480	1262881	1264865	1	1262881	1264865	1262982	1264691	ILV1	orf19.12935|IPF21664.1|IPF16147.2|orf6.4174|CA2318|CaO19.5480|CaO19.12935	Protein described as threonine dehydratase; regulated by Gcn4p and Gcn2p; induced in response to amino acid starvation (3-aminotriazole treatment); protein detected by mass spec in both exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1264634	1266784	-	orf19.5483	1264634	1266784	1	1266784	1264634	1266764	1264800		orf19.12938|IPF21662.1|IPF19755.1|Contig4-2604_0002|orf6.4177|CA2319|CaO19.5483|GUF1|CaO19.12938	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1266791	1268221	-	orf19.5484	1266791	1268221	1	1268221	1266791	1268118	1266940	SER1	orf19.12939|IPF21668.1|IPF10985.1|Contig4-2604_0003|orf6.4178|CA2320|CaO19.12939|CaO19.5484	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1268292	1269454	-	orf19.5485	1268292	1269454	1	1269454	1268292	1269317	1268358	MEC3	orf19.12940|IPF21670.1|IPF10984.1|Contig4-2604_0005|orf6.4179|CA2321|CaO19.12940|CaO19.5485	Increased transcription is observed upon benomyl treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1268355	1269089	+	ntar_398	1268355	1269089	1	1268355	1269089					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1269397	1272052	+	orf19.5486	1269397	1272052	1	1269397	1272052	1269397	1272009		orf19.12941|IPF21656.1|IPF10981.1|Contig4-2604_0006|orf6.4180|CA2322|CaO19.12941|YSH1|CaO19.5486	Putative protein of unknown function; heterozygous null mutant exhibits hypersensitivity to parnafungin and cordycepin in the C. albicans fitness test; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1272120	1272674	+	orf19.5486.1	1272120	1272674	2	1272120|1272286	1272208|1272674	1272204	1272619	SMD2	IPF21683.1|IPF10980.2|Contig4-2604_0007|CA2323	ORF Predicted by Annotation Working Group; flucytosine induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1272629	1275020	-	orf19.5487	1272629	1275020	1	1275020	1272629	1274900	1272714	CDC46	orf19.12942|IPF21660.1|IPF10979.2|Contig4-2604_0008|orf6.4181|CA2324|MCM5|CaO19.5487|CaO19.12942	Protein described as having role in control of cell division; periodic mRNA expression, peak at cell-cycle M/G1 phase; regulated by tyrosol and cell density; Plc1p-regulated; repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1275206	1275970	+	orf19.5488	1275206	1275970	1	1275206	1275970	1275300	1275815		orf19.12943|IPF21677.1|IPF10977.2|Contig4-2604_0010|orf6.4182|CA2325|CaO19.12943|CaO19.5488|IPF10977	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1276040	1277236	+	orf19.5489	1276040	1277236	1	1276040	1277236	1276040	1277236		orf19.12944|orf19.12945|IPF21675.1|IPF5831.2|IPF5832.3|IPF5833.2|Contig4-2947_0024|Contig4-2947_0026|orf6.4183|orf6.4184|orf6.4667|orf19.5490|CaO19.5489|CaO19.12944	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction); merged with orf19.5490 in Assembly 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1276539	1278440	-	orf19.5491	1276539	1278440	1	1278440	1276539	1278420	1277233		orf19.12946|IPF5834.2|IPF28015.1|Contig4-2947_0022|orf6.4185|orf6.4666|CA2678|CaO19.5491|IPF5834	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1278572	1279615	-	orf19.5491.1	1278572	1279615	2	1279615|1279059	1279435|1278572	1279452	1278751	ATP14	IPF21688.1|IPF5835.2|Contig4-2947_0021|CA2677|ATP14.exon2	ORF Predicted by Annotation Working Group; macrophage/pseudohyphal-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1279749	1280489	+	orf19.5492	1279749	1280489	1	1279749	1280489	1279836	1280288		orf19.12947|IPF21681.1|IPF5838.1|Contig4-2947_0019|orf6.4665|CA2676|CaO19.12947|YHC1|CaO19.5492	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1280448	1281446	-	orf19.5493	1280448	1281446	1	1281446	1280448	1281391	1280747	GSP1	orf19.12948|orf6.4664|IPF21672.1|IPF5839.2|Contig4-2947_0017|CA2675|CaO19.5493|CaO19.12948	Small RAN G-protein; essential; prenylation not predicted; overproduction complements viability of S. cerevisiae gsp1 mutant; macrophage/pseudohyphal-induced; not transcriptionally regulated during white-opaque or yeast-hyphal switching [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1285008	1288717	+	orf19.5495	1285008	1288717	1	1285008	1288717	1285343	1288609		orf19.12950|IPF5846|IPF21686.1|IPF5846.1|Contig4-2947_0012|orf6.4662|CA2674|CaO19.5495|CaO19.12950	Protein not essential for viability; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1288873	1290753	-	orf19.5496	1288873	1290753	1	1290753	1288873	1290576	1288969	AVT1	orf19.12951|IPF21666.1|IPF5849.1|Contig4-2947_0008|Contig4-2947_0010|orf6.4661|CA2673|AVT12|CaO19.5496|CaO19.12951|IPF5849	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1295452	1297614	+	orf19.5498	1295452	1297614	1	1295452	1297614	1295452	1297614	EFH1	orf19.12953|IPF21661.1|IPF5855.2|Contig4-2947_0001|orf6.4659|CA2672|PHD1|CaO19.5498|CaO19.12953	Transcriptional activator; minor role in transcriptional regulation, compared to Efg1p; regulates filamentous growth, phenotypic switching; homodimerizes; has APSES domain and acidic region; EFG1 and EFH1 genetically interact [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1297898	1299340	-	orf19.5499	1297898	1299340	1	1299340	1297898	1299340	1297898		orf19.12954|IPF21663.1|IPF5856.2|orf6.4658|CA2671|CaO19.5499|HPD99|CaO19.12954|IPF5856	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1299982	1301074	-	orf19.5500	1299982	1301074	1	1301074	1299982	1301008	1300061	MAK16	orf19.12955|IPF21671.1|IPF5859.3|Contig4-1385_0002|Contig4-1385_0003|orf6.4657|CA2670|CaO19.12955|CaO19.5500|IPF5859.2	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1301213	1301942	-	orf19.17	1301213	1301942	1	1301942	1301213	1301909	1301325	SCP1	orf19.7688|IPF3874.2|IPF29979.1|CA6167|CaO19.17	Predicted ORF in Assemblies 19, 20 and 21; constitutive expression independent of MTL or white-opaque status [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1302279	1304262	-	orf19.18	1302279	1304262	2	1304262|1303454	1303702|1302279	1304152	1302340	IMH3	orf19.7689|orf19.7690|IPF3873.2|IPF27224.1|IPF29977.1|IPF3872.2|orf6.2651|orf6.2652|CA1246|orf19.19|IMD3|CA1245|IMH3.exon2|IMH3.exon1	Inosine monophosphate (IMP) dehydrogenase; enzyme of GMP biosynthesis; target of mycophenolic acid and mizoribine monophosphate; antigenic during human or murine infection; soluble protein in hyphae; downregulated in core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1304498	1305034	-	ntar_399	1304498	1305034	1	1305034	1304498					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1305469	1308672	-	orf19.20	1305469	1308672	1	1308672	1305469	1308223	1305671	RTS1	orf19.7691|IPF27207.1|IPF3870.2|Contig4-3047_0003|orf6.2653|CA1247|CaO19.7691|CaO19.20|IPF3870	Transcription is regulated upon yeast-hyphal switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1309292	1310574	-	orf19.21	1309292	1310574	1	1310574	1309292	1310415	1309828		orf19.7692|IPF3866.2|IPF29978.1|Contig4-3047_0007|orf6.2654|CA1248|SYM1|CaO19.21|CaO19.7692|IPF3866	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1310594	1311612	-	orf19.22	1310594	1311612	1	1311612	1310594	1311518	1310784		orf19.7693|orf6.5916|IPF18727.2|IPF3865.2|Contig4-3047_0009|orf6.2655|CA3605|CaO19.22|CaO19.7693|IPF3865	Transcription is positively regulated by Sfu1p; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1312455	1313376	-	orf19.22.1	1312455	1313376	1	1313376	1312455	1313376	1313245			Pseudogene; added to Assembly 21 based on comparative genome analysis [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=E scenario_last_exon=E]
Ca21chr2	1314793	1316527	+	orf19.23	1314793	1316527	1	1314793	1316527	1314829	1316223	RTA3	orf19.7694|YOR49|Contig4-3047_0020|IPF27215.1|IPF3859.1|orf6.5917|CA3606|CaO19.7694|RSB13|CaO19.23	Similar to S. cerevisiae Rta1p (role in 7-aminocholesterol resistance) and Rsb1p (flippase); putative membrane protein; putative drug-responsive regulatory site; induced by fluphenazine, estradiol, ketoconazole, caspofungin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1317012	1318635	+	orf19.24	1317012	1318635	1	1317012	1318635	1317228	1318589	RTA2	orf19.7695|IPF27216.1|IPF3858.1|Contig4-3047_0022|orf6.5918|CA3607|CaO19.24|RSB11|CaO19.7695	Putative floppase; required for sphingolipid long chain base release; mediates calcineurin-dependent resistance to azoles; stress-associated protein; Ca2+, calcineurin-regulated; ketoconazole, caspofungin induced; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1318251	1318525	-	ntar_400	1318251	1318525	1	1318525	1318251	1318465	1318298			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1318764	1319825	+	orf19.25	1318764	1319825	1	1318764	1319825	1318802	1319773		orf19.7696|IPF27221.1|IPF3857.1|Contig4-3047_0024|orf6.5919|CA3608|CaO19.25|TRM10|CaO19.7696|IPF3857	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1319941	1321285	+	orf19.26	1319941	1321285	1	1319941	1321285	1320001	1321188		orf19.7697|IPF3856.1|Contig4-3047_0025|orf6.5920|CA3609|PNG1|CaO19.7697|CaO19.26|IPF3856	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1321524	1321610	+	ti(aau)1	1321524	1321610	2	1321524|1321575	1321561|1321610				tI(AAU)1.2	tRNA-Ile predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1321782	1323275	+	orf19.27	1321782	1323275	2	1321782|1321998	1321934|1323275	1321872	1323179		orf19.7698|IPF27218.1|IPF3854.1|Contig4-3047_0026|orf6.5921|CA3610|CaO19.7698|CaO19.27|IPF3854	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1323140	1324209	-	orf19.28	1323140	1324209	1	1324209	1323140	1324126	1323221		orf19.7699|IPF27222.1|IPF3853.1|Contig4-3047_0028|orf6.5922|CA3611|CaO19.7699|TPC1|CaO19.28|IPF3853	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1324472	1325671	+	orf19.29	1324472	1325671	1	1324472	1325671	1324614	1325585		orf19.7700|IPF27220.1|IPF3852.2|Contig4-3047_0029|orf6.5923|CA3612|CaO19.29|CaO19.7700|IPF3852	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1325625	1329456	-	orf19.30	1325625	1329456	1	1329456	1325625	1329398	1325727		orf19.7701|IPF27225.1|IPF3849.2|Contig4-1545_0001|orf6.5924|CA3613|CaO19.7701|SPF1|CaO19.30	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1329655	1331921	+	orf19.31	1329655	1331921	1	1329655	1331921	1330987	1331742		orf19.7702|IPF27223.1|IPF8878.1|Contig4-2679_0003|orf6.5925|CA3614|CaO19.7702|CIS302|CaO19.31|IPF8878	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1332397	1333426	-	ntar_401	1332397	1333426	1	1333426	1332397	1332952	1332647			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1332535	1333254	+	ntar_402	1332535	1333254	1	1332535	1333254					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1333727	1334061	+	ntar_403	1333727	1334061	1	1333727	1334061	1333727	1333990			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1334306	1335865	-	orf19.34	1334306	1335865	1	1335865	1334306	1335865	1334306		orf19.7705|orf6.5928|IPF18890.2|IPF8874.2|Contig4-2679_0007|orf6.1824|GIT1|CA3615|CaO19.34	Putative permease of glycerophosphoinositol import; fungal-specific (no human or murine homolog); transcription is negatively regulated by Rim101p; virulence-group-correlated expression [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr2	1334617	1334939	+	ntar_404	1334617	1334939	1	1334617	1334939					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1335175	1335896	+	ntar_405	1335175	1335896	1	1335175	1335896	1335175	1335300			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1338354	1338530	-	ntar_406	1338354	1338530	1	1338530	1338354					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1340755	1344452	+	orf19.35	1340755	1344452	1	1340755	1344452	1341035	1344079		orf19.7708|IPF13398.2|IPF19358.2|Contig4-2637_0007|Contig4-2637_0009|Contig4-2637_0013|orf6.1821|orf6.286|CA0724|SKY2|CaO19.35|IPF13398	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1344430	1344831	-	ntar_407	1344430	1344831	1	1344831	1344430					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1345070	1345723	+	ntar_408	1345070	1345723	1	1345070	1345723					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1345203	1345445	-	orf19.35.1	1345203	1345445	1	1345445	1345203	1345445	1345203			[NOT TRANSCRIBED?] ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1346906	1348705	+	orf19.36	1346906	1348705	1	1346906	1348705	1347014	1348291		orf19.7709|IPF27217.1|IPF13402.1|Contig4-2637_0001|orf6.608|CA0131|CaO19.7709|COG8|CaO19.36|IPF13402	Predicted ORF in Assemblies 19, 20 and 21; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1348588	1349050	-	ntar_409	1348588	1349050	1	1349050	1348588					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1349755	1350211	-	orf19.36.1	1349755	1350211	1	1350211	1349755	1350101	1349895			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1350873	1354374	-	orf19.1295	1350873	1354374	1	1354374	1350873	1354350	1350991	VAS1	orf19.8875|IPF26041.1|IPF13980.2|Contig4-1984_0003|orf6.295|orf6.921|CA0223|CaO19.1295	Putative tRNA-Val synthetase; genes encoding ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1354596	1356462	-	orf19.1296	1354596	1356462	1	1356462	1354596	1356380	1354671		orf19.8876|IPF26039.1|IPF13982.2|orf6.922|CA0224|orf19.82|CaO19.8876|PRP31|CaO19.1296	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1356590	1357476	+	orf19.81	1356590	1357476	1	1356590	1357476	1356640	1357449		Contig4-2678_0013|RRP46|CaO19.81	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1357787	1360292	-	orf19.1223	1357787	1360292	1	1360292	1357787	1360034	1357902	DBF2	orf19.8809|IPF26112.1|IPF13853.2|Contig4-1569_0001|orf6.851|CA0205|CaO19.8809|CaO19.1223	Essential serine/threonine protein kinase involved in mitotic spindle formation and cytokinesis; required for septum formation, exit from mitosis, and normal hyphal morphogenesis; virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1360849	1361141	+	ntar_410	1360849	1361141	1	1360849	1361141					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1363018	1363746	-	ntar_411	1363018	1363746	1	1363746	1363018	1363433	1363296			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1364081	1364265	-	ntar_412	1364081	1364265	1	1364265	1364081					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1364998	1366305	+	orf19.1224	1364998	1366305	1	1364998	1366305	1365218	1366075	FRP3	orf19.8810|IPF13846.3|IPF16160.1|Contig4-2326_0009|orf6.1315|orf6.361|CA0415|AFF1|CaO19.1224	Upregulated in the presence of human neutrophils; fluconazole-downregulated; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1365324	1365655	-	ntar_413	1365324	1365655	1	1365655	1365324					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1366723	1367815	-	orf19.1225	1366723	1367815	1	1367815	1366723	1367676	1367053		orf19.8811|IPF26113.1|IPF17492.2|Contig4-2326_0011|orf6.1316|CA0416|CaO19.1225|IPF17492	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1368033	1368182	-	ntar_414	1368033	1368182	1	1368182	1368033					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1368172	1368440	+	ntar_415	1368172	1368440	1	1368172	1368440					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1368286	1368456	-	ntar_416	1368286	1368456	1	1368456	1368286					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1368934	1369590	+	ntar_417	1368934	1369590	1	1368934	1369590					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1369866	1370269	+	ntar_418	1369866	1370269	1	1369866	1370269					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1370217	1370606	-	ntar_419	1370217	1370606	1	1370606	1370217					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1371575	1373800	+	orf19.3152	1371575	1373800	1	1371575	1373800	1371756	1373771	AMO2	orf19.10662|IPF24146.1|IPF15803.2|orf6.1742|CA0673|CaO19.3152|CaO19.10662|CA0145|IPF11449|IPF11449.1|IPF15803.1	Protein similar to A. niger predicted peroxisomal copper amino oxidase; mutation confers hypersensitivity to toxic ergosterol analog; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1374507	1375872	+	orf19.3151	1374507	1375872	1	1374507	1375872	1374602	1375768		orf19.10661|Contig4-2902_0012|IPF24148.1|IPF15804.2|orf6.1741|CA0672|CaO19.3151|CaO19.10661|GRP6	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1375822	1375994	-	ntar_420	1375822	1375994	1	1375994	1375822					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1376208	1377575	+	orf19.3150	1376208	1377575	1	1376208	1377575	1376462	1377499	GRE2	orf19.10660|orf6.1740|Contig4-2831_0003|GRP4|IPF15555.2|IPF28876.1|CA0671|CaO19.3150|GRE23|CaO19.10660	Protein described as a reductase; transcription is regulated by Nrg1p and Tup1p; benomyl-induced; hyphal-induced; macrophage/pseudohyphal-repressed; expression greater in low iron; reported to be involved in osmotic stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1377438	1378626	-	ntar_421	1377438	1378626	1	1378626	1377438					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1378021	1378295	+	ntar_422	1378021	1378295	1	1378021	1378295					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1379374	1380783	+	orf19.3149	1379374	1380783	1	1379374	1380783	1379510	1380463	LSP1	orf19.10659|IPF15552.2|IPF14171.2|Contig4-2831_0005|orf6.1659|CA0622|SLB2|CaO19.3149|CaO19.10659|IPF14171	Predicted ORF in Assemblies 19, 20 and 21; caspofungin repressed; biofilm induced; fungal-specific (no human or murine homolog); protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1382161	1382403	-	ntar_423	1382161	1382403	1	1382403	1382161	1382331	1382161			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1383122	1385985	+	orf19.3148	1383122	1385985	1	1383122	1385985	1383313	1385898		orf19.10658|IPF14168.3|IPF17999.2|Contig4-2831_0010|Contig4-2831_0011|orf6.1658|orf6.19|CA0621|CaO19.3148|IPF17999	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1386116	1387078	-	orf19.3147	1386116	1387078	1	1387078	1386116	1387030	1386290		orf19.10657|IPF24149.1|IPF17998.2|orf6.1657|CA0620|CaO19.3147|IPF17998	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1387415	1388952	-	orf19.2227	1387415	1388952	1	1388952	1387415	1388799	1387549		orf19.10656|orf19.9769|IPF25081.1|IPF9051.2|IPF18923.2|IPF18924.1|Contig4-2341_0001|orf6.1320|orf6.1656|CA0418|CA0619|orf19.3146|CaO19.2227|STC99|CaO19.9769|IPF9051.5eoc	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1389102	1390562	+	orf19.2228	1389102	1390562	1	1389102	1390562	1389157	1390380		orf19.9770|IPF25058.1|IPF19864.1|Contig4-2341_0006|orf6.1321|CA0419|CaO19.2228|TWF1|CaO19.9770|IPF19864	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1390436	1392220	-	orf19.2229	1390436	1392220	1	1392220	1390436	1392124	1390478		orf19.9771|IPF25048.1|IPF9048.1|Contig4-2341_0007|orf6.1322|CA0420|CaO19.2229|CaO19.9771|IPF9048	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1392276	1392986	+	orf19.2230	1392276	1392986	1	1392276	1392986	1392405	1392764		orf19.9772|IPF25091.1|IPF9047.1|IPF9047|Contig4-2341_0009|orf6.1323|CA0421|CaO19.9772|CaO19.2230	Decreased transcription is observed upon benomyl treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1392803	1394144	-	orf19.2231	1392803	1394144	1	1394144	1392803	1393616	1392837		orf19.9773|IPF25069.1|IPF9046.1|Contig4-2341_0010|orf6.1324|CA0422|CaO19.2231|CaO19.9773|IPF9046	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1395032	1395289	+	ntar_424	1395032	1395289	1	1395032	1395289	1395032	1395190			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1395424	1396672	-	orf19.2232	1395424	1396672	2	1396672|1396123	1396517|1395424	1396519	1395602	RPL11	orf19.9774|IPF25080.1|IPF9044.1|RPL11B|Contig4-2838_0014|orf6.1888|CA0763	Predicted ribosomal protein; genes encoding cytoplasmic ribosomal subunits, translation factors, and tRNA synthetases are downregulated upon phagocytosis by murine macrophage; colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1396815	1397827	-	orf19.2233	1396815	1397827	1	1397827	1396815	1397736	1396879	PRE2	orf19.9775|IPF25065.1|IPF9042.1|Contig4-2838_0012|orf6.1889|CA0764|CaO19.2233|CaO19.9775	Protein described as beta-5 subunit of proteasome; macrophage-induced protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1398009	1401876	-	orf19.2236	1398009	1401876	1	1401876	1398009	1401601	1398143		orf19.9778|orf6.1892|IPF9040.3|IPF29164.1|Contig4-2838_0010|orf6.2396|CA0765|FHL1|CaO19.2236|IPF9040|IPF9040.3eoc|IPF9040.2	Protein with forkhead domain; similar to Fhl1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1402483	1404060	+	orf19.2237	1402483	1404060	1	1402483	1404060	1402483	1404060	SPR1	orf19.9779|IPF25049.1|IPF19900.1|Contig4-2838_0007|Contig4-2838_0008|orf6.2395|CA1078|CaO19.2237|CaO19.9779	[NOT TRANSCRIBED?] Putative GPI-anchored protein; not essential for viability; similar to S. cerevisiae Spr1p, which is a sporulation-specific exo-1,3-beta-glucanase [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1404335	1405431	+	orf19.2237.1	1404335	1405431	2	1404335|1404449	1404374|1405431	1404372	1405051		CA6201|IPF13696|orf19.9779.1	Predicted ORF in Assembly 20 and 21; gene has intron [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1404975	1405387	-	ntar_425	1404975	1405387	1	1405387	1404975	1405161	1405030			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1406377	1406698	-	ntar_426	1406377	1406698	1	1406698	1406377					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1407128	1412407	+	orf19.2238	1407128	1412407	1	1407128	1412407	1407349	1412304	LTE1	orf19.9780|orf19.9781|IPF25036.1|IPF13694.2|IPF25034.1|IPF19721.1|Contig4-2781_0024|Contig4-2838_0001|Contig4-2838_0002|orf6.2394|orf6.2393|CA1077|CA1076|orf19.2239|CaO19.9780|LTE99|CaO19.2238|IPF13694	Protein similar to S. cerevisiae Lte1p; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1412405	1413598	-	orf19.2241	1412405	1413598	1	1413598	1412405	1413266	1412670	PST1	IPF17954.2|IPF18769.1|Contig4-2561_0001|orf6.1034|orf6.2391|CA6202|IPF18769	Protein described as 1,4-benzoquinone reductase; biofilm induced; hyphal-induced expression, regulated by Cyr1p, Ras1p, Efg1p, Nrg1p, Rfg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1413904	1415464	-	orf19.2242	1413904	1415464	1	1415464	1413904	1415365	1413968	PRB1	orf19.9783|orf6.1035|PRB2|IPF12896.2|IPF29156.1|Contig4-2561_0002|orf6.2390|CA0270|CaO19.2242|PRB11	Putative endoprotease B; regulated by heat, carbon source (GlcNAc-induced), nitrogen, macrophage response, human neutrophils; putative D200-H232-S389 catalytic triad; similar to (but does not replace) S. cerevisiae vacuolar B protease Prb1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1415533	1416799	-	orf19.2244	1415533	1416799	1	1416799	1415533	1416704	1415745		orf19.9785|orf6.1037|IPF12897.2|IPF29158.1|Contig4-2561_0004|CA0271|CaO19.9785|CaO19.2244|IPF12897	Similar to oxidoreductases and to S. cerevisiae Yjr096wp; transcription is negatively regulated by Sfu1p; increased transcription is observed upon benomyl treatment; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1417314	1418481	+	orf19.2245	1417314	1418481	1	1417314	1418481	1417737	1418390	YPT72	IPF19068.2|IPF12899.1|Contig4-2561_0005|orf6.5901|CA3593|CaO19.2245|YPT7|YPT71	Vacuolar Rab small monomeric GTPase involved in vacuolar biogenesis; involved in filamentous growth and virulence [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1418444	1419337	-	orf19.2246	1418444	1419337	1	1419337	1418444	1419303	1418533		orf19.9786|IPF25072.1|IPF12900.2|Contig4-2561_0008|orf6.5900|CA3592|CaO19.9786|CaO19.2246|IPF12900	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1419523	1421182	-	orf19.2247	1419523	1421182	1	1421182	1419523	1421082	1419556		orf19.9787|IPF25051.1|IPF12902.2|Contig4-2561_0011|orf6.5899|CA3591|AQR4|CaO19.2247|CaO19.9787|IFT2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1422333	1424494	-	orf19.2248	1422333	1424494	1	1424494	1422333	1424342	1422513	ARE2	orf19.9788|IPF10109.2|IPF10110.1|Contig4-2290_0009|orf6.5898|CA3590|CaO19.9788|CaO19.2248	Acyl CoA:sterol acyltransferase (ASAT); uses cholesterol and oleoyl-CoA substrates; protoberberine derivative drug inhibits enzyme activity; 7 putative transmembrane regions; ketoconazole-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1425716	1426270	+	ntar_427	1425716	1426270	1	1425716	1426270					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1426268	1427184	-	orf19.2249	1426268	1427184	1	1427184	1426268	1427146	1426430		orf19.9789|IPF25071.1|IPF10113.1|Contig4-2290_0005|orf6.5897|CA3589|CaO19.2249|CaO19.9789|IPF10113	Predicted ORF in Assemblies 19, 20 and 21; decreased expression observed in an ssr1 homozygous null mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1427521	1427693	-	ntar_428	1427521	1427693	1	1427693	1427521					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1427894	1428894	+	orf19.2250	1427894	1428894	1	1427894	1428894	1427916	1428809	SPE3	orf19.9790|IPF25063.1|IPF10115.1|Contig4-2104_0003|Contig4-2104_0004|orf6.5896|CA3588|CaO19.9790|CaO19.2250	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1429245	1430669	+	orf19.2251	1429245	1430669	1	1429245	1430669	1429343	1430413	AAH1	orf19.9791|IPF25061.1|IPF10117.2|Contig4-2104_0002|orf6.5895|orf6.307|CA3587|CaO19.2251	Protein not essential for viability; similar to S. cerevisiae Aah1p, which is an adenine deaminase involved in purine salvage and nitrogen catabolism; shows colony morphology-related gene regulation by Ssn6p; Hog1p-, biofilm-, CO2-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1431742	1433280	+	orf19.2252	1431742	1433280	1	1431742	1433280	1431742	1433280		orf19.9792|IPF10120.2|IPF15939.1|Contig4-2665_0008|orf6.306|orf6.5894|CA3586|AQR2|CaO19.2252|IFT3	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1434439	1436393	+	orf19.2253	1434439	1436393	1	1434439	1436393	1434609	1436165		orf19.9793|IPF25047.1|IPF16720.2|Contig4-2665_0006|orf6.5893|CA3585|CaO19.9793|AQR3|CaO19.2253|IFT1	Predicted ORF in Assemblies 19, 20 and 21; expression is regulated upon white-opaque switching; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1436527	1437412	+	orf19.2256	1436527	1437412	1	1436527	1437412	1436602	1437294		orf19.9796|IPF25074.1|IPF15468.1|Contig4-2665_0004|orf6.5890|CA3584|CaO19.2256|CaO19.9796|IPF15468	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1437525	1438858	+	orf19.2257	1437525	1438858	2	1437525|1437643	1437574|1438858	1437525	1438696		orf19.9797|IPF25062.1|IPF20137.1|Contig4-2665_0002|orf6.5889|CA3583|IPF20137	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1438715	1440038	-	orf19.2258	1438715	1440038	1	1440038	1438715	1440036	1438852		orf19.9798|IPF25059.1|IPF15466.2|Contig4-2665_0001|orf6.5888|CA3582|CaO19.9798|CaO19.2258|IPF15466	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1440120	1441126	-	orf19.2259	1440120	1441126	1	1441126	1440120	1441079	1440264		orf19.9799|IPF25066.1|IPF16143.2|Contig4-2843_0021|orf6.5887|CA3581|CaO19.9799|CaO19.2259|IPF16143	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1441244	1442493	+	orf19.2260	1441244	1442493	1	1441244	1442493	1441294	1442382		orf19.9800|IPF25060.1|IPF16141.2|Contig4-2843_0020|orf6.5886|CA3580|CaO19.2260|CaO19.9800|IPF16141	Putative transcription factor with zinc finger DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1442729	1443813	+	orf19.2261	1442729	1443813	1	1442729	1443813	1442849	1443628		orf19.9801|IPF25070.1|IPF11104.2|Contig4-2843_0018|orf6.5885|CA3579|CaO19.9801|SAP49|CaO19.2261|HSH49	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1443868	1445064	+	orf19.2262	1443868	1445064	1	1443868	1445064	1443868	1445022		orf19.9802|IPF25057.1|IPF11105.2|Contig4-2843_0016|orf6.5884|CA3578|ZTA1|CaO19.2262|CaO19.9802|IPF11105	Predicted ORF in Assemblies 19, 20 and 21; similar to quinone oxidoreductases; increased transcription is observed upon benomyl treatment; induced by nitric oxide; oxidative stress-induced via Cap1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	1444949	1445650	-	orf19.2263	1444949	1445650	1	1445650	1444949	1445592	1445053		orf19.9803|IPF25078.1|IPF11106.2|Contig4-2843_0015|orf6.5883|CA3577|CaO19.9803|CaO19.2263|IPF11106	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1445813	1447522	-	orf19.2264	1445813	1447522	1	1447522	1445813	1447461	1445881	OLE2	orf19.9804|IPF25050.1|IPF11107.2|Contig4-2843_0012|orf6.5882|CA3576|CaO19.2264|CaO19.9804|IPF11107	Protein with similarity to fatty acid desaturase (stearoyl-CoA desaturase); homozygous null mutant shows decreased production of prostaglandin E2 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1447733	1449304	+	orf19.2265	1447733	1449304	1	1447733	1449304	1447816	1449225		orf19.9805|IPF25054.1|IPF11108.2|Contig4-2843_0011|orf6.5881|CA3575|CaO19.9805|SNF12|CaO19.2265|IPF11108	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1449267	1452371	-	orf19.2266	1449267	1452371	1	1452371	1449267	1451856	1449364		orf19.9806|IPF19585.2|IPF19584.1|Contig4-2843_0009|orf6.436|orf6.5880|CA3574|CaO19.2266|IPF19584	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1452359	1453480	+	orf19.2267	1452359	1453480	1	1452359	1453480	1452518	1453336	RFA2	orf19.9807|IPF19276.2|IPF13308.1|Contig4-2843_0008|orf6.435|orf6.5879|CA3573|CaO19.2267	Protein described as DNA replication factor A; RNA abundance regulated by cell cycle, tyrosol and cell density [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1453580	1456061	-	orf19.2268	1453580	1456061	1	1456061	1453580	1455586	1453817	RCK2	orf19.9808|IPF19933.1|IPF29154.1|Contig4-2843_0002|Contig4-2843_0005|orf6.3573|CA1881|CaO19.2268|CA3572|IPF18321|IPF18321.1	Predicted MAP kinase-activated protein kinase, similar to S. cerevisiae serine/threonine protein kinase Rck2p; induced by osmotic stress via Hog1p; macrophage/pseudohyphal-repressed; mutants are sensitive to rapamycin [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1457791	1458762	+	orf19.2269	1457791	1458762	1	1457791	1458762	1457877	1458614		orf19.9809|IPF25073.1|IPF13316.2|Contig4-1520_0002|orf6.3572|CA1880|CaO19.2269|CaO19.9809|IPF13316	Putative 3-phosphoserine phosphatase; fungal-specific (no human or murine homolog); increased transcription is observed upon benomyl treatment or in an azole-resistant strain that overexpresses MDR1 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1459808	1461938	+	orf19.2270	1459808	1461938	1	1459808	1461938	1460029	1461783	SMF12	orf19.9810|SMF1|IPF25043.1|IPF19747.1|orf6.3571|CA1879|SMF11|CaO19.2270|CaO19.9810	Protein not essential for viability; similar to S. cerevisiae Smf1p, which is a manganese transporter; Gcn4p-regulated; alkaline upregulated; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1461961	1464974	-	orf19.2272	1461961	1464974	1	1464974	1461961	1464540	1462144		orf19.9812|IPF25037.1|IPF10298.2|Contig4-2395_0001|Contig4-3049_0034|orf6.3569|CA1878|CaO19.9812|CaO19.2272|IPF10298	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1465810	1466280	-	ntar_429	1465810	1466280	1	1466280	1465810					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1466424	1467253	+	orf19.2274	1466424	1467253	1	1466424	1467253	1466424	1467170		orf19.9814|IPF25067.1|IPF10300.1|Contig4-3049_0033|orf6.3567|CA1877|CaO19.2274|CaO19.9814|IPF10300	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	1467224	1467961	-	orf19.2275	1467224	1467961	1	1467961	1467224	1467917	1467393		orf19.9815|IPF25079.1|IPF10301.1|Contig4-3049_0031|orf6.3566|CA1876|CaO19.9815|MRPL12|CaO19.2275|IPF10301	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1468381	1469099	+	orf19.2276	1468381	1469099	1	1468381	1469099	1468475	1468813		orf19.9816|IPF25086.1|IPF10302.1|Contig4-3049_0028|orf6.3565|CA1875|CaO19.2276|RPB9|CaO19.9816	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1468962	1471046	-	orf19.2277	1468962	1471046	1	1471046	1468962	1470574	1469240	TPK2	orf19.9817|IPF25055.1|IPF10304.1|Contig4-3049_0025|Contig4-3049_0027|orf6.3564|CA1874|CaO19.2277|CaO19.9817	Catalytic subunit of cAMP-dependent protein kinase (PKA), isoform of Tpk1p; required for wild-type epithelial cell damage and engulfment and oral (not systemic) virulence in mouse; involved in control of morphogenesis and stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1472318	1473350	+	orf19.2278	1472318	1473350	1	1472318	1473350	1472371	1473165		orf19.9818|IPF25068.1|IPF10309.2|Contig4-3049_0021|orf6.3563|orf6.997|CA0256|CaO19.2278|IPF10309	Predicted ORF in Assemblies 19, 20 and 21; filament induced; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1473290	1476239	-	orf19.2280	1473290	1476239	1	1476239	1473290	1476115	1473350		ZCF10|orf19.9820|IPF25032.1|IPF10084.3|Contig4-3049_0020|orf6.2248|orf6.999|CA0257|CaO19.2280|QUA1|IPF10079|IPF10084.2	Putative transcription factor with zinc cluster DNA-binding motif [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1476933	1478435	-	orf19.2281	1476933	1478435	1	1478435	1476933	1478435	1476933		orf19.9821|IPF25052.1|IPF10077.2|Contig4-3049_0014|orf6.2249|CA0994|OCA99|CaO19.9821|CaO19.2281|IPF10077	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr2	1477074	1477303	+	ntar_430	1477074	1477303	1	1477074	1477303					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1479147	1480139	-	orf19.2282	1479147	1480139	1	1480139	1479147	1480139	1479147		orf19.9822|IPF10074.1|IPF18758.2|Contig4-3049_0013|orf6.2250|CA1112|HQD1|CaO19.2282|IPF18758|CA0995|IPF10074|IPF18758.5eoc|IPF18758.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr2	1480399	1481121	-	orf19.2283	1480399	1481121	1	1481121	1480399	1481049	1480609	DQD1	orf19.9823|IPF10071.2|IPF29159.1|Contig4-3049_0012|orf6.2251|orf6.2443|CA0996|CaO19.2283|DQD99|IPF10071	Predicted ORF in Assemblies 19, 20 and 21; ketoconazole-repressed; macrophage-downregulated protein abundance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1481279	1482571	+	orf19.2284	1481279	1482571	1	1481279	1482571	1481535	1482554		orf19.9824|IPF9998.2|IPF29157.1|Contig4-3049_0010|orf6.2252|orf6.2444|CA0997|CaO19.2284|IPF9998	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1482795	1484489	+	orf19.2285	1482795	1484489	1	1482795	1484489	1482795	1484489		orf19.9825|IPF18802.2|IPF9996.2|IPF9996|Contig4-3049_0008|orf6.2253|orf6.2445|CA1113|CaO19.2285	Increased transcription is observed upon benomyl treatment [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1484678	1485766	+	orf19.2286	1484678	1485766	1	1484678	1485766	1484709	1485665		orf19.9826|IPF25064.1|IPF9995.2|Contig4-3049_0005|orf6.2446|CA1114|CaO19.2286|CaO19.9826|IPF9995	Predicted ORF in Assemblies 19, 20 and 21; ketoconazole-induced; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1485576	1486270	-	orf19.2287	1485576	1486270	1	1486270	1485576	1486119	1485748	RPA12	orf19.9827|IPF25090.1|IPF9993.2|Contig4-3049_0004|orf6.2447|CA1115|CaO19.9827|CaO19.2287	Protein described as DNA-directed RNA polymerase I; induced upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1486708	1488488	+	orf19.2288	1486708	1488488	1	1486708	1488488	1486767	1488413	CCT5	orf19.9828|IPF25045.1|IPF9991.2|Contig4-3049_0003|orf6.2448|CA1116|CaO19.9828|CaO19.2288	Predicted ORF in Assemblies 19, 20 and 21. Protein detected by mass spec in exponential and stationary phase cultures. [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1488664	1490121	+	orf19.2289	1488664	1490121	1	1488664	1490121	1488790	1490049	ARP3	orf19.9829|IPF25056.1|IPF9988.2|Contig4-3049_0002|orf6.2449|CA1117|CaO19.9829|CaO19.2289	Predicted ORF in Assemblies 19, 20 and 21; shows Myo5p-dependent localization to cortical actin patches at hyphal tip; mutation confers hypersensitivity to cytochalasin D [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1490220	1497830	+	orf19.2290	1490220	1497830	1	1490220	1497830	1490298	1497746	TOR1	orf19.9459|orf19.9461|orf19.9830|TOR|IPF25458.1|IPF9719.2|IPF25075.1|IPF9987.3|Contig4-3049_0001|orf6.7015|orf6.7017|orf6.2450|CA4469|CA4468|CA1118|orf19.1905|orf19.1903|TOR2|CaO19.9830|CaO19.2290|IPF9987|IPF9987.2	Protein similar to TOR family phosphatidylinositol kinases; mutation confers resistance to rapamycin; involved in regulation of ribosome biogenesis, starvation response, and adhesion [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1497536	1498402	-	ntar_431	1497536	1498402	1	1498402	1497536					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1498568	1500426	+	orf19.1902	1498568	1500426	1	1498568	1500426	1498605	1500293	NOC4	orf19.9458|IPF25429.1|IPF9717.2|Contig4-2752_0016|orf6.7018|CA4470|CaO19.1902|CaO19.9458|IPF9717	Predicted ORF in Assemblies 19, 20 and 21; mutation confers resistance to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1500527	1503368	+	orf19.1901	1500527	1503368	1	1500527	1503368	1500642	1503278	MCM3	orf19.9457|IPF25419.1|IPF9716.2|Contig4-2752_0015|orf6.7019|CA4471|CaO19.9457|CaO19.1901	Predicted ORF in Assemblies 19, 20 and 21; periodic mRNA expression, peak at cell-cycle M/G1 phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1503512	1505015	+	orf19.1900	1503512	1505015	1	1503512	1505015	1503549	1505000		orf19.9456|IPF25434.1|IPF6444.2|Contig4-2752_0013|orf6.7020|CA4472|CaO19.9456|TGS1|CaO19.1900|IPF6444	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1505184	1506687	+	orf19.1897	1505184	1506687	1	1505184	1506687	1505373	1506407		orf19.9453|IPF25441.1|IPF6447.1|Contig4-2752_0011|orf6.7023|CA4473|CaO19.1897|CaO19.9453|IPF6447	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1506924	1509168	+	orf19.1896	1506924	1509168	1	1506924	1509168	1506984	1508930	SSC1	orf19.9452|IPF25425.1|IPF6450.2|Contig4-2752_0006|Contig4-2752_0008|orf6.7024|CA4474|CaO19.9452|CaO19.1896	Heat shock protein; at surface of yeast-form cells, but not hyphae; antigenic; soluble in hyphae; Gcn4p-regulated; induced upon amino acid starvation (3-aminotriazole) or upon adherence to polystyrene; macrophage-downregulated protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1509123	1511663	-	orf19.1893	1509123	1511663	1	1511663	1509123	1511607	1509238		orf19.9449|IPF25421.1|IPF6455.2|Contig4-2189_0003|Contig4-2752_0004|Contig4-2752_0005|orf6.7027|CA4475|CaO19.9449|CaO19.1893|IPF6455	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1511949	1513510	-	orf19.1891	1511949	1513510	1	1513510	1511949	1513476	1512217	1-Apr	orf19.9447|orf6.7029|PRA|IPF25433.1|IPF6456.2|Contig4-2189_0002|CA4476|PEP4|CaO19.9447|CaO19.1891	Vacuolar aspartic proteinase; mRNA abundance is equivalent in yeast-form and mycelial cells but is elevated at lower growth temperatures; upregulated in the presence of human neutrophils; detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1514612	1516368	+	orf19.1890	1514612	1516368	1	1514612	1516368	1514712	1516178		orf19.9446|IPF25432.1|IPF6459.1|orf6.7030|CA4477|CaO19.1890|CaO19.9446|IPF6459	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1516487	1518153	+	orf19.1889	1516487	1518153	1	1516487	1518153	1516534	1517256		orf19.9445|IPF25444.1|IPF6461.2|orf6.7031|CA4478|CaO19.9445|CaO19.1889|IPF6461	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1517186	1518429	-	orf19.1888	1517186	1518429	1	1518429	1517186	1518360	1517368		orf19.9444|IPF25442.1|IPF6462.1|Contig4-2743_0009|orf6.7032|CA4479|CaO19.1888|URH1|CaO19.9444	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1519006	1521165	-	orf19.1887	1519006	1521165	1	1521165	1519006	1520960	1519257		orf19.9443|IPF25430.1|IPF6464.2|Contig4-2743_0008|orf6.7033|CA4480|CaO19.9443|CaO19.1887|IPF6464	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1521327	1522778	-	orf19.1886	1521327	1522778	1	1522778	1521327	1522721	1521606	RCL1	orf19.9442|IPF25440.1|IPF9148.2|Contig4-2743_0006|orf6.190|orf6.7034|CA0027|CaO19.1886	Predicted ORF in Assemblies 19, 20 and 21; essential; downregulated during core stress response; S. cerevisiae ortholog is essential [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1523032	1523225	-	ntar_432	1523032	1523225	1	1523225	1523032					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1523327	1524541	+	orf19.1885	1523327	1524541	1	1523327	1524541	1523380	1524471	TAF4	orf19.9441|IPF9150.1|IPF29273.1|Contig4-2743_0004|orf6.7035|CA4481|CaO19.1885|IPF9150	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1524685	1528364	+	orf19.1883	1524685	1528364	1	1524685	1528364	1524754	1528272	YCS4	orf19.9439|IPF25461.1|IPF9154.2|Contig4-2743_0002|orf6.7037|CA4482|CaO19.9439|CaO19.1883|IPF9154	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1528438	1530759	+	orf19.1881	1528438	1530759	1	1528438	1530759	1528522	1530330		orf19.9437|IPF25428.1|IPF9156.2|orf6.7039|CA4483|CaO19.9437|CaO19.1881|IPF9156	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1530847	1532335	+	orf19.1880	1530847	1532335	1	1530847	1532335	1531048	1532208	HEM15	orf19.9436|orf6.7040|IPF25439.1|IPF9158.2|Contig4-3010_0023|Contig4-3010_0024|CA4484|CaO19.1880|CaO19.9436	Putative ferrochelatase involved in heme biosynthesis; transcription is not regulated by iron levels and is also not affected by a yfh1 null mutation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1532191	1533427	-	orf19.1878	1532191	1533427	1	1533427	1532191	1533274	1532303		orf19.9434|IPF25443.1|IPF9160.2|Contig4-3010_0022|orf6.7042|CA4485|CaO19.1878|CaO19.9434|IPF9160	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1533448	1534361	+	orf19.1877	1533448	1534361	1	1533448	1534361	1533526	1534341		orf19.9433|IPF25445.1|IPF9162.2|Contig4-3010_0019|orf6.7043|CA4486|CaO19.1877|CaO19.9433|IPF9162	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1534226	1535819	-	orf19.1876	1534226	1535819	1	1535819	1534226	1535696	1534338		orf19.9432|IPF25435.1|IPF4039.2|Contig4-3010_0018|orf6.7044|CA4487|NAM8|CaO19.9432|CaO19.1876|IPF4039	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1535827	1537231	-	orf19.1874	1535827	1537231	2	1537231|1536549	1536617|1535827	1537231	1535827		orf19.9430|orf19.9431|IPF4042.2|IPF25446.1|IPF29274.1|IPF4041.1|Contig4-3010_0012|Contig4-3010_0014|Contig4-3010_0015|orf6.7045|orf6.7046|CA4489|CA4488|orf19.1875|MEK.5f	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1537831	1538460	+	orf19.1873	1537831	1538460	1	1537831	1538460	1537876	1538208		orf19.9429|IPF4044.1|IPF17567.2|Contig4-3010_0011|orf6.282|orf6.7047|CaO19.1873	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1538659	1539580	+	orf19.1872	1538659	1539580	1	1538659	1539580	1538720	1539355		orf19.9428|IPF4045.1|IPF17566.1|Contig4-3010_0010|orf6.283|orf6.7048|CA4490|CaO19.1872|IPF4045	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1539834	1544891	+	orf19.1871	1539834	1544891	1	1539834	1544891	1539900	1544825		orf19.9427|IPF4050.2|IPF29275.1|Contig4-3010_0009|orf6.284|orf6.7049|CA4491|SWR1|CaO19.1871	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1544803	1545121	-	ntar_433	1544803	1545121	1	1545121	1544803	1545121	1544816			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1546030	1547657	+	orf19.1868	1546030	1547657	1	1546030	1547657	1546130	1547314	RNR22	orf19.9424|IPF25438.1|IPF4053.1|Contig4-3010_0006|orf6.7052|CA4492|RNR2|CaO19.9424|CaO19.1868	Protein described as ribonucleoside diphosphate reductase; shows colony morphology-related gene regulation by Ssn6p; RNA abundance regulated by tyrosol and cell density [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1547722	1549012	-	ntar_434	1547722	1549012	1	1549012	1547722					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1547799	1548998	+	orf19.1867	1547799	1548998	1	1547799	1548998	1547799	1548998		orf19.9423|MAE1|IPF25437.1|IPF4055.2|Contig4-3010_0003|Contig4-3010_0005|orf6.7053|CA4493|CaO19.9423|SSU12|CaO19.1867|IPF4055	Putative malate permease; induced during macrophage infection; regulated by Gcn2p and Gcn4p; has putative peroxisome targeting signal [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr2	1549217	1549848	+	orf19.1866	1549217	1549848	1	1549217	1549848	1549286	1549627		orf19.9422|IPF25457.1|IPF4056.2|Contig4-3010_0002|orf6.7054|CA4494|VMA10|CaO19.9422|CaO19.1866|VMA1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1549721	1551909	-	orf19.1865	1549721	1551909	1	1551909	1549721	1551800	1549956		orf19.9421|IPF25426.1|IPF4059.1|Contig4-3010_0001|orf6.7055|CA4495|CaO19.9421|CaO19.1865|IPF4059	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1551994	1554467	-	orf19.1864	1551994	1554467	1	1554467	1551994	1554414	1552255		orf19.9420|IPF4062.2|IPF19004.2|Contig4-3010_0027|orf6.1264|orf6.7056|CA4496|CaO19.1864|IPF4062	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1554724	1556511	+	orf19.1863	1554724	1556511	1	1554724	1556511	1554724	1556511		orf19.9419|IPF4064.2|IPF19005.1|Contig4-2502_0003|orf6.1263|orf6.7057|CA4497|CaO19.1863|IPF4064.5f|IPF4064	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1556446	1557148	-	orf19.1862	1556446	1557148	1	1557148	1556446	1556975	1556610		orf19.9418|IPF4065|orf6.1262|IPF18208.2|IPF4065.1|Contig4-2502_0004|CA0386|CaO19.1862	Possible stress protein; increased transcription is associated with CDR1 and CDR2 overexpression or fluphenazine treatment; transcription regulated by Sfu1p, Nrg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1558217	1560347	+	orf19.1861	1558217	1560347	1	1558217	1560347	1558356	1560230		orf19.9417|orf19.9763|IPF25427.1|IPF4071.2|IPF25109.1|IPF29169.1|orf6.1261|orf6.4263|CA0385|orf19.2218|CaO19.1861|CaO19.9417|IPF4071	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1560045	1561799	-	orf19.1860.1	1560045	1561799	1	1561799	1560045	1561733	1560333		orf19.9762|IPF25116.1|IPF4072.2|orf6.1260|orf6.4262|CA2380|orf19.2217	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1562001	1566104	+	orf19.2216	1562001	1566104	1	1562001	1566104	1562086	1565997	PDS5	orf19.9761|IPF25164.1|IPF4073.2|Contig4-1620_0001|orf6.4261|CA2379|CaO19.9761|CaO19.2216|IPF4073	Predicted ORF in Assemblies 19, 20 and 21; cell-cycle regulated periodic mRNA expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1566003	1567818	-	orf19.2215	1566003	1567818	1	1567818	1566003	1567634	1566132	GLE1	orf19.9760|IPF25118.1|IPF15261.2|Contig4-1620_0004|Contig4-1620_0006|orf6.4260|CA2378|CaO19.2215|CaO19.9760	Predicted ORF in Assemblies 19, 20 and 21; moderately induced at 42 deg [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1568280	1569283	+	orf19.2214	1568280	1569283	1	1568280	1569283	1568309	1569172		orf19.9759|IPF25143.1|IPF15259.2|Contig4-2359_0006|orf6.4259|CA2377|CaO19.2214|MRPL7|CaO19.9759	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1569348	1571259	+	orf19.2213	1569348	1571259	1	1569348	1571259	1569408	1570772		orf19.9758|IPF25122.1|IPF15506.2|Contig4-2359_0005|orf6.4258|CA2376|CaO19.2213|CaO19.9758|IPF15506	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1570837	1571154	-	orf19.2212	1570837	1571154	1	1571154	1570837	1571154	1570837		orf19.9757|IPF25170.1|IPF15505.1|Contig4-2359_0004|orf6.4257|CaO19.9757|CaO19.2212	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1571396	1572238	+	orf19.2211	1571396	1572238	1	1571396	1572238	1571396	1572238		orf19.9756|IPF25144.1|IPF15504.1|Contig4-2359_0003|orf6.4256|CA2375|CaO19.2211|CaO19.9756|IPF15504	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1572187	1574465	-	orf19.2210	1572187	1574465	1	1574465	1572187	1574362	1572314		orf19.9755|IPF19934.2|IPF29168.1|Contig4-2359_0002|Contig4-3058_0002|orf6.3574|orf6.4255|CA1882|CaO19.2210|IPF19934|IPF19934.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1577333	1579918	+	orf19.2209	1577333	1579918	1	1577333	1579918	1577496	1579523	YVC1	orf19.9754|IPF25104.1|IPF5479.2|Contig4-3058_0005|orf6.3575|CA1883|CaO19.2209|CaO19.9754|IPF5479	Protein similar to S. cerevisiae Yvc1p; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1580453	1585143	+	orf19.2208	1580453	1585143	1	1580453	1585143	1580742	1584941		orf19.9753|IPF25161.1|IPF5486.2|Contig4-3058_0008|Contig4-3058_0011|orf6.3576|CA1884|CaO19.9753|CaO19.2208|IPF5486	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1585488	1586493	+	orf19.2204.2	1585488	1586493	1	1585488	1586493	1585831	1586394		IPF25102.1|IPF5490.1|Contig4-3058_0013|CA1886|RHO2.3f	ORF Predicted by Annotation Working Group (see Locus History Note for Assembly 19 correction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1586528	1586713	-	ntar_435	1586528	1586713	1	1586713	1586528					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1587269	1588883	+	orf19.2204	1587269	1588883	1	1587269	1588883	1587418	1588800		orf19.9749|IPF25125.1|IPF5496.1|Contig4-3058_0014|Contig4-3058_0015|Contig4-3058_0016|orf6.3580|CA1887|CaO19.2204|CaO19.9749|IPF5496	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1587271	1589344	-	orf19.2203.1	1587271	1589344	1	1589344	1587271	1589275	1588979			ORF added to Assembly 21 based on comparative genome analysis; overlaps dubious orf19.2203  [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1589241	1589558	+	orf19.2203	1589241	1589558	1	1589241	1589558	1589241	1589558		IPF29181.1|orf6.4338|CaO19.2203	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1589495	1590404	-	orf19.2202	1589495	1590404	1	1590404	1589495	1590300	1589575		orf19.9748|IPF18594.1|IPF5498.1|Contig4-3058_0019|orf6.3581|orf6.4339|CA1888|CaO19.2202|IPF18594	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1591011	1591579	+	orf19.2201	1591011	1591579	1	1591011	1591579	1591049	1591387		orf19.9747|IPF18593.2|IPF5499.1|Contig4-3058_0021|orf6.3582|orf6.4340|CA1889|CBP6|CaO19.9747|CaO19.2201|IPF18593.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1591783	1593333	+	orf19.2200	1591783	1593333	1	1591783	1593333	1591892	1593202		orf19.9746|IPF25130.1|IPF5500.2|Contig4-3058_0024|orf6.4341|CA2436|CaO19.2200|CaO19.9746|IPF5500	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1593203	1594444	-	orf19.2199	1593203	1594444	1	1594444	1593203	1594358	1593351	PHO86	orf19.9745|IPF25140.1|IPF5501.1|Contig4-3058_0025|orf6.4342|CA2437|CaO19.9745|CaO19.2199	Predicted ORF in Assemblies 19, 20 and 21; possibly adherence-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1595405	1598157	+	orf19.2198	1595405	1598157	1	1595405	1598157	1595730	1597886	FLC3	orf19.9744|IPF25103.1|IPF5505.2|Contig4-3058_0030|orf6.4343|CA2438|CaO19.2198|CFP3|CaO19.9744|IPF5505	Protein involved in heme uptake; putative FAD transporter, similar to S. cerevisiae Flc3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1598856	1600358	+	orf19.2197	1598856	1600358	1	1598856	1600358	1598856	1600358		orf19.9743|IPF25119.1|IPF7514.2|Contig4-3058_0032|orf6.4344|CA2439|CaO19.2197|CaO19.9743|IPF7514	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1600445	1600516	-	tm(cau)2	1600445	1600516	1	1600516	1600445				tM(CAU)2.2	tRNA-Met predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1600726	1601001	-	ntar_436	1600726	1601001	1	1601001	1600726	1601001	1600834			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1600892	1602515	+	orf19.2196	1600892	1602515	1	1600892	1602515	1601015	1602379		orf19.9742|IPF25128.1|IPF7513.2|Contig4-3058_0034|orf6.4345|CA2440|CaO19.2196|CUE3|CaO19.9742|IPF7513	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1601392	1601934	-	orf19.2195	1601392	1601934	1	1601934	1601392	1601934	1601392		IPF25151.1|IPF7512.2|orf6.4346	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1602543	1604088	+	orf19.2194	1602543	1604088	1	1602543	1604088	1602661	1604073		orf19.9740|IPF25124.1|IPF7509.2|Contig4-3058_0036|orf6.4347|CA2441|CaO19.2194|APM4|CaO19.9740	Phosphorylated protein of unknown function; predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1604322	1605862	+	orf19.2193	1604322	1605862	1	1604322	1605862	1604375	1605715	PRS5	orf19.9739|IPF25123.1|IPF7507.2|Contig4-3058_0037|orf6.4348|CA2442|CaO19.9739|CaO19.2193	Predicted ORF in Assemblies 19, 20 and 21; downregulated during core stress response [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1607145	1607567	+	ntar_437	1607145	1607567	1	1607145	1607567	1607368	1607502			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1608078	1611798	+	orf19.2192	1608078	1611798	1	1608078	1611798	1608435	1611605	GDH2	orf19.9738|IPF19745.1|IPF29185.1|Contig4-2073_0005|Contig4-2073_0006|Contig4-2075_0005|orf6.3428|CA1775|CaO19.2192	Putative NAD-specific glutamate dehydrogenase; fungal-specific (no human or murine homolog); transcription is regulated by Nrg1p, Mig1p, Tup1p, and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1611591	1612121	-	orf19.2191.1	1611591	1612121	1	1612121	1611591	1612089	1611913			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1612141	1613410	+	orf19.2191	1612141	1613410	1	1612141	1613410	1612254	1613291		orf19.9737|IPF25137.1|IPF7498.2|Contig4-2075_0002|orf6.3427|CA1774|CaO19.9737|CaO19.2191|IPF7498	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1613227	1615337	-	orf19.2190	1613227	1615337	1	1615337	1613227	1615337	1613343	VRP1	orf19.9736|IPF25107.1|IPF12461.2|orf6.3426|CA1773|CaO19.2190|CaO19.9736	Protein described as verprolin; downregulated upon adherence to polystyrene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1615450	1617290	-	orf19.2187	1615450	1617290	1	1617290	1615450	1617026	1615542	ALG7	orf19.9733|IPF25121.1|IPF12460.2|Contig4-2452_0003|orf6.3423|CA1772|CaO19.2187|CaO19.9733	Protein involved in cell wall mannan biosynthesis; mutation confers hypersensitivity to tunicamycin; transcription is elevated in chk1, nik1, and sln1 homozygous null mutants [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1617552	1618731	+	orf19.2186	1617552	1618731	1	1617552	1618731	1617552	1618595		orf19.9732|IPF25138.1|IPF12458.2|Contig4-2452_0004|orf6.3422|CA1771|CaO19.9732|SEH1|CaO19.2186	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	1618129	1619838	-	orf19.2185	1618129	1619838	1	1619838	1618129	1619808	1618588	NSA1	orf19.9731|IPF25132.1|IPF12457.2|Contig4-2452_0006|orf6.3421|CA1770|CaO19.2185|CaO19.9731|IPF12457	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1620320	1620406	+	ti(aau)2	1620320	1620406	2	1620320|1620371	1620357|1620406				tI(AAU)2.2	tRNA-Ile predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1620484	1621590	+	orf19.2184	1620484	1621590	1	1620484	1621590	1620567	1621463		orf19.9730|IPF12454.2|IPF5534.2|Contig4-2452_0008|orf6.3420|orf6.6079|CA3735|FAH2|CaO19.2184|IPF5534|IPF5534.1	Predicted ORF in Assemblies 19, 20 and 21; clade-associated gene expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1621657	1621915	+	ta(agc)1	1621657	1621915	1	1621657	1621915	1621693	1621860		tA(AGC)1.2	tRNA-Ala predicted by tRNAscan-SE [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	1621783	1623771	-	orf19.2183	1621783	1623771	1	1623771	1621783	1623732	1621903	KRE30	orf19.9729|IPF25112.1|IPF5533.2|Contig4-3057_0002|orf6.6080|CA3736|CaO19.2183|CaO19.9729|IPF5533	YEF3-subfamily ABC family protein, predicted not to be a transporter; downregulated during core stress response; mutation confers hypersensitivity to amphotericin B [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1624632	1631501	+	orf19.2182	1624632	1631501	1	1624632	1631501	1624806	1631408	BLM3	orf19.9728|IPF25148.1|IPF5529.1|Contig4-3057_0004|Contig4-3057_0005|orf6.6081|CA3737|CaO19.2182|CaO19.9728	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae Blm10p; transcription is regulated by Nrg1p and Mig1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1631407	1633104	-	orf19.2180	1631407	1633104	1	1633104	1631407	1632775	1631660		orf19.9726|IPF25136.1|IPF5526.1|Contig4-3057_0008|orf6.6083|CA3738|CaO19.9726|CaO19.2180|IPF5526	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1632310	1632840	+	orf19.2181	1632310	1632840	1	1632310	1632840	1632310	1632840		IPF25147.1|IPF5525.1|orf6.6082|CaO19.2181|CaO19.9727	[NOT TRANSCRIBED?] ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1633229	1634190	-	orf19.2179.2	1633229	1634190	2	1634190|1633750	1634070|1633229	1634121	1633446	RPS10	IPF25168.1|IPF5524.1|Contig4-3057_0011|Contig4-3057_0012|CA3739|RPS10.3	Predicted ribosomal protein; downregulated in the presence of human whole blood or polymorphonuclear (PMN) cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1634521	1636374	-	orf19.2179	1634521	1636374	1	1636374	1634521	1636365	1634551	SIT1	orf19.9725|ARN1|orf6.6084|YHL040C|IPF25111.1|IPF5522.1|Contig4-3057_0013|CA3740|CaO19.2179|CaO19.9725	Transporter of ferrichrome siderophores, but not ferrioxamine B; required for wild-type invasion of human epithelial cells in vitro, but not for wild-type systemic virulence in mouse; transcription regulated by iron, Sfu1p, Rfg1p, Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1637875	1638802	+	orf19.2178.1	1637875	1638802	1	1637875	1638802	1638462	1638671			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1638712	1640343	-	orf19.2178	1638712	1640343	1	1640343	1638712	1639848	1638871		orf19.9724|IPF25142.1|IPF5513.1|Contig4-3057_0017|orf6.6085|CA3741|CaO19.2178|MRS3|CaO19.9724|MRS4	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1640878	1642598	-	orf19.2176	1640878	1642598	1	1642598	1640878	1642014	1640977	IFM3	orf19.9722|IPF25139.1|IPF5511.1|Contig4-3057_0018|orf6.6087|CA3742|CaO19.2176|CaO19.9722	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1641445	1641981	+	orf19.2177	1641445	1641981	1	1641445	1641981	1641445	1641981		IPF25150.1|IPF5510.1|orf6.6086	ORF Predicted by Annotation Working Group [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1642714	1644066	+	orf19.2175	1642714	1644066	1	1642714	1644066	1642904	1644007		orf19.9721|IPF25135.1|IPF19998.1|Contig4-3057_0019|Contig4-3057_0021|Contig4-3057_0022|orf6.6088|CA3743|CPD1|CaO19.9721|CaO19.2175|IPF19998	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1644189	1645792	+	orf19.2174	1644189	1645792	1	1644189	1645792	1644238	1645773	RAD57	orf19.9720|IPF25120.1|IPF10144.2|Contig4-3057_0023|orf6.6089|CA3744|CaO19.9720|CaO19.2174	Essential protein; described as having role in DNA recombination, repair; transcriptionally induced by interaction with macrophage; transcription is regulated by Nrg1p, Mig1p, and Tup1p; S. cerevisiae ortholog is essential [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1646076	1647749	+	orf19.2173	1646076	1647749	2	1646076|1646397	1646211|1647749	1646206	1647533	MAF1	orf19.9719|IPF25133.1|IPF10146.2|Contig4-3057_0024|orf6.6090|CA3745	Protein described as affecting nucleocytoplasmic transport and synthesis of RNA Polymerase III; decreased expression in hyphae compared to yeast-form cells; caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1647969	1649352	+	orf19.2172	1647969	1649352	1	1647969	1649352	1648100	1649080	ARA1	orf19.9718|IPF25141.1|IPF10148.2|Contig4-3057_0027|orf6.6091|CA3746|CaO19.9718|CaO19.2172	D-Arabinose dehydrogenase; in dehydro-D-arabinono-1,4-lactone biosynthesis; NADP+ cofactor; active toward D-arabinose, L-fucose, L-xylose, L-galactose; inhibited by metal ions, thiol group-specific reagents; induced on polystyrene adherence [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1649270	1652438	-	orf19.2170	1649270	1652438	1	1652438	1649270	1652255	1649472	PHM7	orf19.9716|IPF25099.1|IPF10153.2|Contig4-3057_0029|orf6.6093|CA3747|CaO19.2170|IPF10153	Putative transporter; fungal-specific (no human or murine homolog); Hog1p-downregulated; downregulated in response to 17-beta-estradiol, ethynyl estradiol [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1654307	1655002	+	orf19.2169	1654307	1655002	1	1654307	1655002	1654307	1655002		orf19.9715|IPF16181.3|IPF29176.1|orf6.1806|orf6.6094|CA6200|CaO19.2169|IPF29176	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1655000	1655889	-	orf19.2168.3	1655000	1655889	2	1655889|1655618	1655776|1655000	1655826	1655148		IPF13710.3|IPF16182.1|Contig4-2572_0016|CA6199|IPF16182	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1656164	1656976	+	ntar_438	1656164	1656976	1	1656164	1656976	1656355	1656555			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1657091	1658434	+	orf19.2168	1657091	1658434	1	1657091	1658434	1657091	1658434		orf19.9714|IPF25127.1|IPF13715.1|Contig4-2572_0010|orf6.1805|CA0713|CaO19.9714|AES2|CaO19.2168|IFJ2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr2	1658481	1660192	-	orf19.2167	1658481	1660192	2	1660192|1660034	1660118|1658481	1660135	1658682		orf19.9713|IPF25129.1|IPF13717.1|Contig4-2572_0007|orf6.1804|CA0712|CaO19.9713|CaO19.2167|IPF13717	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1660573	1662192	+	orf19.2166	1660573	1662192	1	1660573	1662192	1660762	1661928		orf19.9712|IPF13718.3|IPF29174.1|Contig4-2572_0004|orf6.1314|orf6.1803|CA0711|VMA5|CaO19.2166|IPF13718.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1662341	1663624	+	orf19.2165	1662341	1663624	1	1662341	1663624	1662652	1663488		orf19.9711|IPF16630.3|IPF25145.1|IPF29175.1|Contig4-2572_0003|orf6.754|orf6.1313|CA6233|CA6198|orf19.1125|CaO19.9711|HWH3|CaO19.2165|IPF29175	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1663802	1663930	-	orf19.2164.1	1663802	1663930	1	1663930	1663802	1663930	1663802	MFA1		Mating pheromone, a-factor; produced in opaque MTLa cells; required for mating competence of MTLa cells, but not MTLalpha; induced by alpha-factor [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1665815	1669441	+	orf19.2219	1665815	1669441	1	1665815	1669441	1665815	1669441	ORF298	orf19.9710|orf19.9764|IPF25169.1|IPF4068.2|IPF25165.1|IPF29182.1|Contig4-2502_0009|Contig4-2502_0010|orf6.1312|orf6.4264|POL|CA0414|orf19.2164|POL94|CaO19.9764|CaO19.2219	Predicted ORF in retrotransposon Tca3 with similarity to Gag-Pol, which encodes nucleocapsid-like protein, reverse transcriptase, protease, and integrase; transcription is a-specific, alpha-factor induced; mRNA binds to She3p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1670638	1670949	+	orf19.2220	1670638	1670949	1	1670638	1670949	1670638	1670949		orf19.9765|IPF25157.1|IPF11641.1|orf6.4265|CaO19.2220|CaO19.9765	Predicted ORF in Assemblies 19, 20 and 21; induced by Rgt1p [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1671059	1673062	-	orf19.2222	1671059	1673062	1	1673062	1671059	1672713	1671577		orf19.9766|orf19.9767|YCK3|IPF25134.1|IPF11643.2|Contig4-2626_0009|orf6.4266|orf6.4267|CA2381|CA2382|orf19.2221|YCK22|CaO19.2222|CaO19.9767|YCK3.5f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1673269	1674806	+	orf19.2660	1673269	1674806	1	1673269	1674806	1673425	1674534	EAF3	IPF11644|IPF18475.1|IPF11644.3|Contig4-2626_0007|orf6.1465|CA0496|orf19.2222.1|ALP13|CaO19.2660|IPF11644.2	Subunit of the NuA4 histone acetyltransferase complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1675679	1676610	-	orf19.1354	1675679	1676610	1	1676610	1675679	1676610	1676005	UCF1	orf19.8934|orf6.1218|IPF20056|IPF20056.1|IPF20057.1|Contig4-1837_0007|Contig4-2626_0005|orf6.1464|YER67|CA0495|orf19.2659|CaO19.8934|CaO19.1354	Putative protein of unknown function; mRNA binds to She3p; transcription is induced in high iron, decreased upon yeast-hyphal switch; downregulation correlates with clinical development of fluconazole resistance; Ras1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1676646	1677182	-	orf19.1353	1676646	1677182	1	1677182	1676646	1677182	1676646		orf19.8933|IPF25986.1|IPF11646.2|Contig4-1837_0006|Contig4-2626_0004|orf6.1217|CA0368|CaO19.8933|CaO19.1353|IPF11646	Predicted ORF in Assemblies 19, 20 and 21; transcription downregulated upon yeast-hyphal switch; Ras1p-regulated [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1678087	1679225	+	orf19.1352	1678087	1679225	1	1678087	1679225	1678514	1679068		orf19.8932|IPF25985.1|IPF16416.2|IPF18964.1|Contig4-1837_0001|orf6.1216|orf6.1463|CA0367|orf19.2658|CaO19.8932|TIM22|CaO19.1352	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1679118	1680025	-	orf19.1351	1679118	1680025	1	1680025	1679118	1679940	1679200		orf19.8931|IPF19017.1|IPF19081.2|orf6.1215|orf6.978|CA0366|CaO19.1351|IPF19017	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1681554	1682898	+	orf19.1350	1681554	1682898	1	1681554	1682898	1681722	1682720		orf19.8930|IPF19616.2|IPF19617.1|Contig4-3000_0026|orf6.1214|orf6.979|CA0249|CaO19.1350|IPF19617	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1683047	1683487	-	orf19.1349	1683047	1683487	1	1683487	1683047	1683487	1683047		orf19.8929|IPF25987.1|IPF9726.2|Contig4-3000_0024|Contig4-3000_0025|orf6.980|CaO19.1349|CaO19.8929	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1684575	1685138	-	orf19.1348	1684575	1685138	1	1685138	1684575	1685138	1684575		orf19.12588|orf19.8928|IPF25984.1|IPF17661.1|IPF22162.1|IPF9727.2|Contig4-3000_0022|orf6.981|orf6.6328|CA0250|orf19.5122|CaO19.8928|CaO19.1348|IPF17661	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1685648	1688413	-	orf19.5121	1685648	1688413	1	1688413	1685648	1688413	1685648	OPT5	orf19.12587|orf19.8927|IPF17662.1|IPF22113.1|IPF9728.2|Contig4-3000_0021|orf6.982|CA3919|orf19.1347|CaO19.5121|OPT251|CaO19.12587|IFC5|orf6.6329	[NOT TRANSCRIBED?] Oligopeptide transporter; fungal-specific (no human or murine homolog); induced by BSA, but not by tetrapeptide or pentapeptide [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1690361	1692149	-	orf19.1435	1690361	1692149	1	1692149	1690361	1691935	1690559	TEF1	orf19.12585|orf19.9009|TEF-1|TEF3|YEF3|EFT3|IPF9732.2|IPF29461.1|IPF22137.1|IPF28153.1|HEF1|Contig4-2267_0001|orf6.1202|orf6.6331|CA0362|orf19.5119|TEF2-2|CaO19.1435|CaO19.9009	Translation elongation factor 1-alpha, detected at surface of yeast-form and hyphal cells; binds human plasminogen; macrophage/pseudohyphal-induced; upregulated in an RHE model of oral candidiasis and in clinical oral candidiasis isolates [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1692262	1694598	-	orf19.1434	1692262	1694598	1	1694598	1692262	1694489	1692342		orf19.9008|IPF9733.2|IPF17695.2|Contig4-2267_0004|orf6.1038|orf6.1203|CA0272|CaO19.1434|DPB11	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1692326	1692611	+	ntar_439	1692326	1692611	1	1692326	1692611					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1694871	1696793	+	orf19.1433	1694871	1696793	1	1694871	1696793	1695466	1696659		orf19.9007|IPF25891.1|IPF19066.1|orf6.1039|CA0273|CaO19.9007|CaO19.1433|IPF19066	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1696732	1696851	-	orf19.1433.1	1696732	1696851	1	1696851	1696732					[NOT TRANSCRIBED?] ORF added to Assembly 21 based on comparative genome analysis; overlaps orf19.1433.2, which is annotated as a blocked reading frame [label_first_exon=CGD label_last_exon=CGD orf_changed=true scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1697454	1697662	-	ntar_440	1697454	1697662	1	1697662	1697454	1697604	1697479			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1699165	1700553	+	orf19.3639	1699165	1700553	1	1699165	1700553	1699324	1700388		orf19.11121|IPF23673.1|IPF14127.2|Contig4-2385_0005|orf6.2754|CA1314|CaO19.3639|MAG1|CaO19.11121	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1700457	1701479	-	orf19.3638	1700457	1701479	1	1701479	1700457	1701479	1700457	PGA46	orf19.11120|IPF18709.2|IPF14126.2|Contig4-2385_0004|orf6.2753|CA1313|CaO19.11120|CaO19.3638|IPF14126	Putative GPI-anchored protein of unknown function [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1701552	1701869	+	orf19.3637	1701552	1701869	1	1701552	1701869	1701552	1701869		orf19.11119|IPF23692.1|IPF28717.1|orf6.2752|CaO19.11119|CaO19.3637	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1704786	1709600	+	orf19.3635	1704786	1709600	1	1704786	1709600	1704794	1709485		orf19.11117|IPF14241.2|IPF28710.1|Contig4-2417_0002|orf6.2750|CA1312|CaO19.11117|CaO19.3635|IPF14241	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1709624	1710307	-	orf19.3633	1709624	1710307	1	1710307	1709624	1710179	1709691		orf19.11115|IPF23682.1|IPF14233.1|Contig4-2417_0003|orf6.2748|CA1311|CaO19.11115|CaO19.3633|IPF14233	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1710483	1712384	-	orf19.3631	1710483	1712384	1	1712384	1710483	1712272	1710509		orf19.11114|IPF14232.2|IPF28707.1|Contig4-2417_0005|orf6.2708|orf6.2747|CA1310|CaO19.3631|IPF14232|IPF14232.1	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1712583	1714244	+	orf19.3630	1712583	1714244	1	1712583	1714244	1712650	1713936	RRP8	orf19.11113|IPF23665.1|IPF10837.2|orf6.2709|CA1277|CaO19.11113|CaO19.3630|IPF10837	Predicted ORF in Assemblies 19, 20 and 21; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1714095	1714290	-	ntar_441	1714095	1714290	1	1714290	1714095					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1714464	1714875	-	ntar_442	1714464	1714875	1	1714875	1714464					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1715579	1718513	+	orf19.3629	1715579	1718513	1	1715579	1718513	1716138	1718312	DSE1	orf19.11112|IPF23656.1|IPF10835.2|Contig4-2517_0008|Contig4-2517_0009|orf6.2710|CA1278|CaO19.3629|CaO19.11112|IPF10835	Predicted cell wall protein; transcription is decreased in mutant lacking ACE2; periodic mRNA expression, peak at cell-cycle M/G1 phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1718765	1719050	+	ntar_443	1718765	1719050	1	1718765	1719050					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1718916	1719287	-	ntar_444	1718916	1719287	1	1719287	1718916					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1719439	1722309	+	orf19.3628	1719439	1722309	1	1719439	1722309	1719503	1722001	RSP5	orf19.11111|IPF23654.1|IPF10833.2|Contig4-2517_0005|Contig4-2517_0007|orf6.2711|CA1279|CaO19.3628|CaO19.11111	Predicted ORF in Assemblies 19, 20 and 21; induced during infection of murine kidney, compared to growth in vitro; has murine homolog [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1722615	1723577	+	orf19.3627	1722615	1723577	1	1722615	1723577	1722702	1723421		orf19.11110|IPF18958.2|IPF10828.2|Contig4-2517_0004|orf6.1478|orf6.2712|CA1280|CaO19.3627|IPF10828	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1723640	1723825	-	orf19.3626.1	1723640	1723825	1	1723825	1723640	1723801	1723640		IPF18957.1|CA0505|IPF11988.3f|IPF11988.3	ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1724312	1726526	-	orf19.3626	1724312	1726526	1	1726526	1724312	1726526	1724412		orf19.11109|IPF23662.1|IPF18957.1|IPF11988.2|IPF28722.1|Contig4-1622_0003|Contig4-3078_0001|orf6.1479|CA0506|IPF11988.5f|IPF11988	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1726577	1727832	-	orf19.3625	1726577	1727832	1	1727832	1726577	1727787	1726738		orf19.11108|IPF23675.1|IPF11989.2|Contig4-2568_0007|orf6.1480|CA0507|YNG1|CaO19.11108|CaO19.3625|IPF11989	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1728276	1731843	-	orf19.3624	1728276	1731843	1	1731843	1728276	1731843	1728403		orf19.11107|IPF11991.3|IPF28720.1|Contig4-2568_0003|orf6.1481|orf6.1516|CA0508|CaO19.3624|MSU1|IPF11991|IPF11991.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	1732041	1735889	+	orf19.3623	1732041	1735889	1	1732041	1735889	1732194	1735709	SMC2	orf19.11106|IPF23694.1|IPF11993.2|Contig4-2568_0001|orf6.1515|CA0529|CaO19.3623	Protein similar to S. cerevisiae Smc2p, which is a component of the condensin complex involved in mitotic chromosome condensation; induced under hydroxyurea treatment [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1736379	1738349	+	orf19.3622	1736379	1738349	1	1736379	1738349	1736880	1738166	ANP1	orf19.11105|IPF23669.1|IPF5178.2|Contig4-1830_0001|orf6.1514|CA0528|CaO19.3622|CaO19.11105	Putative mannosyltransferase of Golgi; member of Mnn9p family; similar to S. cerevisiae Anp1p; fungal-specific (no human or murine homolog) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1739765	1741000	+	orf19.3621	1739765	1741000	1	1739765	1741000	1739765	1741000		orf19.11104|IPF23670.1|IPF5180.3|Contig4-1595_0002|orf6.1513|orf6.3291|CA0527|CaO19.3621|IPF5180|CA1679|IPF5180.3eoc|IPF18631.1	Possible pseudogene; similar to Ywp1p; ORF extended upstream from the initiating Met of orf19.3621 has a stop codon in the region corresponding to the Ywp1p signal peptide; disruption causes no apparent phenotype; no expression detected [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr2	1740775	1741328	-	ntar_445	1740775	1741328	1	1741328	1740775	1741328	1741170			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1741432	1742055	-	ntar_446	1741432	1742055	1	1742055	1741432					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1741580	1742054	+	ntar_447	1741580	1742054	1	1741580	1742054					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1743701	1743930	-	ntar_448	1743701	1743930	1	1743930	1743701					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1744348	1744713	-	ntar_449	1744348	1744713	1	1744713	1744348	1744511	1744368			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1744371	1745250	+	ntar_450	1744371	1745250	1	1744371	1745250	1744531	1744677			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1744912	1745273	-	ntar_451	1744912	1745273	1	1745273	1744912	1745161	1745030			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1745465	1745745	-	ntar_452	1745465	1745745	1	1745745	1745465					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1746941	1749161	+	orf19.3618	1746941	1749161	1	1746941	1749161	1747033	1748634	YWP1	orf19.11101|orf6.3288|FLO1|TEP1|IPF5185|CA1678|PGA24|IPF23664.1|IPF5185.2|Contig4-2227_0007|CaO19.3618|CaO19.11101	Cell wall and secreted protein with suggested role in dispersal in host; mutation causes increased adhesion and biofilm formation; has stable propeptide; regulated by growth phase, phosphate, Ssk1p, Ssn6p, Efg1p, Efh1p; mRNA binds to She3p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1749527	1749775	+	ntar_453	1749527	1749775	1	1749527	1749775	1749527	1749775			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1750041	1751479	+	orf19.3617	1750041	1751479	1	1750041	1751479	1750180	1751238		orf19.11100|IPF23676.1|IPF5189.2|Contig4-2008_0006|Contig4-2227_0011|orf6.3287|CA1677|CaO19.3617|GTR1|CaO19.11100	Putative protein of unknown function, transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis;; predicted ORF in Assemblies 19, 20 and 21 (see Locus History Note for Assembly 19 correction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1750851	1751489	-	ntar_454	1750851	1751489	1	1751489	1750851	1751291	1751157			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1751751	1753626	+	orf19.3616	1751751	1753626	1	1751751	1753626	1752011	1753357	ERG9	orf19.11099|IPF23667.1|IPF5191.2|Contig4-2008_0002|orf6.3286|CA1676|CaO19.3616|CaO19.11099	Putative farnesyl-diphosphate farnesyl transferase (squalene synthase) involved in the sterol biosynthesis pathway; likely to be essential for growth; regulated by fluconazole and lovastatin; amphotericin B, caspofungin repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1753844	1755533	+	orf19.3615	1753844	1755533	1	1753844	1755533	1753971	1755452		orf19.11098|IPF23666.1|IPF5192.2|Contig4-2505_0010|orf6.3285|CA1675|CaO19.3615|CaO19.11098|IPF5192	Predicted ORF in Assemblies 19, 20 and 21; induced in core caspofungin response; increased expression observed in an ssr1 homozygous null mutant; induced by nitric oxide in yhb1 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1754393	1754603	-	ntar_455	1754393	1754603	1	1754603	1754393					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1754983	1755205	-	ntar_456	1754983	1755205	1	1755205	1754983					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1755603	1757216	-	orf19.3613	1755603	1757216	1	1757216	1755603	1757141	1755738		orf19.11096|IPF23668.1|IPF5194.2|Contig4-2505_0006|orf6.3283|CA1674|PAF1|CaO19.11096|CaO19.3613	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1757401	1758113	-	orf19.3612	1757401	1758113	1	1758113	1757401	1758090	1757485	PST2	orf19.11095|IPF23677.1|IPF5195.2|Contig4-2505_0004|orf6.3282|CA1673|CaO19.3612|CQR2|CaO19.11095|PST21	Putative NADH:quinone oxidoreductase; similar to 1,4-benzoquinone reductase; immunogenic in mice; benomyl treatment induces transcription; oxidative stress-induced via Cap1p; fungal-specific (no human/murine homolog), farnesol-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1757731	1757865	+	ntar_457	1757731	1757865	1	1757731	1757865					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1759062	1759989	+	orf19.3611	1759062	1759989	1	1759062	1759989	1759149	1759622		orf19.11094|IPF5196.2|IPF18754.2|Contig4-2505_0001|orf6.2467|orf6.3281|CA1672|CaO19.11094|CaO19.3611|IPF5196	Predicted ORF in Assemblies 19, 20 and 21; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1759899	1762007	-	orf19.3610	1759899	1762007	1	1762007	1759899	1761870	1759930		orf19.11093|IPF5197|IPF23660.1|IPF5197.2|Contig4-2807_0005|orf6.2466|CA1129|CaO19.3610|CaO19.11093	Predicted ORF in Assemblies 19, 20 and 21; upregulation correlates with clinical development of fluconazole resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1762112	1763775	-	orf19.3609	1762112	1763775	1	1763775	1762112	1763718	1762447	UTP15	orf19.11092|IPF23672.1|IPF5198.2|Contig4-2321_0007|orf6.2465|CA1128|CaO19.3609|CaO19.11092|IPF5198	Predicted ORF in Assemblies 19, 20 and 21; mutation confers resistance to 5-fluorocytosine (5-FC); physically interacts with TAP-tagged Nop1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1764427	1767900	+	orf19.3608	1764427	1767900	1	1764427	1767900	1764507	1767620		orf19.11091|IPF23697.1|IPF5201.2|Contig4-2321_0006|orf6.2464|CA1127|CaO19.11091|MSH3|CaO19.3608	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1767593	1769203	-	orf19.3607	1767593	1769203	1	1769203	1767593	1769024	1767615		orf19.11090|IPF18812.2|IPF5203.2|Contig4-2321_0004|Contig4-2321_0005|orf6.2463|orf6.2220|CA1126|CaO19.3607|IPF5203|ECM18.3eoc	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1768763	1769009	+	ntar_458	1768763	1769009	1	1768763	1769009					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1769587	1770600	-	orf19.3606	1769587	1770600	1	1770600	1769587	1770365	1769844		orf19.11089|IPF18811.1|IPF5204.2|orf6.2221|orf6.2462|CA0975|CaO19.3606|IPF18811	Predicted ORF in Assemblies 19, 20 and 21; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1770908	1772047	+	orf19.3605	1770908	1772047	1	1770908	1772047	1771106	1771831		orf19.11088|IPF17165.2|IPF18755.1|Contig4-1774_0003|orf6.2222|orf6.2461|CA0976|CaO19.3605|PEX17	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1772207	1773612	+	orf19.3604	1772207	1773612	1	1772207	1773612	1772272	1773420		orf19.11087|IPF18810.1|IPF17166.2|orf6.2460|orf6.2223|CA0977|CaO19.3604|IPF18810	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1773269	1773748	-	ntar_459	1773269	1773748	1	1773748	1773269					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1774264	1777049	+	orf19.3603	1774264	1777049	1	1774264	1777049	1774591	1776867		orf19.11086|IPF23655.1|IPF16222.2|Contig4-1896_0001|Contig4-1896_0002|orf6.2224|CA0978|CaO19.11086|CaO19.3603|IPF16222	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1777052	1778915	+	orf19.3601	1777052	1778915	1	1777052	1778915	1777186	1778829		orf19.11084|IPF23663.1|IPF19713.1|orf6.2226|CA0979|CaO19.3601|CaO19.11084|IPF19713	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1778950	1779687	+	orf19.3600	1778950	1779687	1	1778950	1779687	1778986	1779687		orf19.11083|IPF23678.1|IPF17655.2|Contig4-2333_0004|orf6.2227|CA0980|CaO19.11083|CaO19.3600|IPF17655	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1779827	1783391	-	orf19.3599	1779827	1783391	1	1783391	1779827	1783309	1780055	TIF4631	orf19.11082|IPF19840.2|IPF17394.3|eIF4G|Contig4-2333_0003|orf6.315|orf6.705|orf6.2228|CA0048|TIF46|CaO19.3599|IPF17394.2	Putative translation initiation factor eIF4G; overexpression causes hyperfilamentation; hyphal- and macrophage-induced; genes encoding some translation factors are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1783654	1784324	-	orf19.3594	1783654	1784324	1	1784324	1783654	1784221	1783886		orf19.11076|orf6.701|CaO19.11076|CaO19.3594	Predicted ORF from Assembly 19; removed from Assembly 20; subsequently reinstated in Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1783730	1784150	+	ntar_460	1783730	1784150	1	1783730	1784150	1784001	1784150			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1784369	1785771	+	orf19.3593	1784369	1785771	1	1784369	1785771	1784521	1785726	RPT6	orf19.11075|IPF13102.2|IPF18846.2|Contig4-2320_0007|Contig4-2333_0001|orf6.2051|orf6.700|CA0155|CaO19.3593	Predicted ORF in Assemblies 19, 20 and 21; transcription is regulated by Mig1p; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1785965	1788084	+	orf19.3592	1785965	1788084	1	1785965	1788084	1786043	1787953	JEM1	orf19.11074|IPF19182.2|IPF13100.1|Contig4-2320_0006|orf6.2050|CA0872|CaO19.3592|IPF13100	Functional homolog of S. cerevisiae Jem1p, which acts with Scj1p and Kar2p (BiP) in protein folding and ER-associated degradation of misfolded proteins, and also has a role in karyogamy; has J domain and 4 tetratricopeptide repeats [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1788074	1789909	-	orf19.3591	1788074	1789909	1	1789909	1788074	1789799	1788147	APE3	orf19.11073|IPF17873.2|IPF16625.2|Contig4-2320_0004|Contig4-2320_0005|orf6.2049|orf6.806|CA0871|CaO19.3591	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn2p and Gcn4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1790124	1791372	-	orf19.3590	1790124	1791372	1	1791372	1790124	1791316	1790450	IPP1	orf19.11072|IPF19605.1|IPF19604.1|Contig4-2320_0001|orf6.2048|orf6.807|CA0870|CaO19.3590	Protein described as inorganic pyrophosphatase; antigenic in human, mouse; soluble protein in hyphae; macrophage-induced protein; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1791595	1792524	-	orf19.3589	1791595	1792524	1	1792524	1791595	1792524	1791595	SPO11	orf19.11071|IPF19138.1|IPF14772.1|orf6.2047|orf6.808|CA0869|CaO19.3589|IPF14772	DNA endonuclease required for genetic recombination between homologous chromosomes during the parasexual cycle; produced in mitotically dividing cells; similar to S. cerevisiae Spo11p, which functions in recombination during meiosis [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1793229	1794649	+	orf19.3586	1793229	1794649	1	1793229	1794649	1793412	1794308		IPF14774.2|IPF18847.1|Contig4-2332_0003|orf6.2044|orf6.2046|CA0867|CA0868|orf19.3588|IPF14773.3f|CA0190|IPF14773|orf6.809|IPF14773.2|IPF14773.exon2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1794845	1795746	+	orf19.3585	1794845	1795746	1	1794845	1795746	1794949	1795341		orf19.11069|IPF23681.1|IPF14775.2|Contig4-2332_0005|orf6.2043|CA0866|CaO19.3585|CaO19.11069|IPF14775	Predicted ORF in Assemblies 19, 20 and 21; regulated by Gcn4p; repressed in response to amino acid starvation (3-aminotriazole treatment) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1795196	1796572	-	orf19.225	1795196	1796572	1	1796572	1795196	1796450	1795365		orf19.7855|orf19.11068|IPF27113.1|IPF13828.1|IPF23674.1|IPF14777.1|Contig4-2332_0007|orf6.275|orf6.2042|CA0865|orf19.3584|CaO19.225|CaO19.7855	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1797532	1800237	+	orf19.223	1797532	1800237	1	1797532	1800237	1797692	1800076		orf19.7854|IPF19261.2|IPF13825.2|Contig4-2835_0022|orf6.276|orf6.278|orf6.476|orf6.5150|CA3029|CaO19.223|IPF13825	Predicted ORF in Assemblies 19, 20 and 21; increased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1800309	1801837	-	orf19.220	1800309	1801837	1	1801837	1800309	1801743	1800703	PIR1	orf19.7851|orf6.474|PIR2|IPF15363.2|IPF19968.1|orf6.5153|CA3030|CaO19.220|IPF19968	Structural protein of cell wall; 1,3-beta-glucan-linked; O-glycosylated by Pmt1p; N-mannosylated; tandem repeats; heterozygous mutant has cell wall defects; hyphal repressed; Hog1p, fluconazole, hypoxia induced; iron, Efg1p, Plc1p regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1807304	1807645	+	orf19.218	1807304	1807645	1	1807304	1807645	1807304	1807645	BUD20	orf19.7850|IPF27125.1|IPF18392.1|orf6.5155|CaO19.7850|CaO19.218	Protein similar to S. cerevisiae Bud20p, which affects bud site selection; transposon mutation affects filamentous growth [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1809207	1810346	+	orf19.217	1809207	1810346	1	1809207	1810346	1809207	1810346		orf19.7849|IPF27112.1|IPF12324.2|Contig4-2967_0001|orf6.5156|CA3031|CaO19.217|CaO19.7849|IPF12324	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1812564	1813052	+	orf19.216.1	1812564	1813052	1	1812564	1813052	1812610	1812792			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1812933	1814680	-	orf19.216	1812933	1814680	1	1814680	1812933	1814489	1812963		orf19.7848|IPF12319|IPF13203.3|IPF12319.2|Contig4-2967_0004|orf6.5157|orf6.28|CA3032|CaO19.216	Predicted ORF in Assemblies 19, 20 and 21; ketoconazole-induced; upregulation correlates with clinical development of fluconazole resistance [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1815934	1818034	+	orf19.215	1815934	1818034	1	1815934	1818034	1816129	1817877		orf19.7847|IPF27103.1|IPF13202.1|Contig4-2967_0007|orf6.5158|CA3033|CaO19.215|AVO2|CaO19.7847|IPF13202	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1818209	1819203	+	orf19.213	1818209	1819203	1	1818209	1819203	1818268	1819101		orf19.7845|IPF27114.1|IPF13198.1|Contig4-2967_0009|orf6.5160|CA3034|CaO19.213|RPN12|CaO19.7845	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1819026	1820020	-	orf19.212	1819026	1820020	1	1820020	1819026	1819896	1819150	VPS28	orf19.7844|IPF27116.1|IPF13197.2|Contig4-2967_0010|orf6.5161|CA3035|CaO19.7844|CaO19.212	Protein involved in proteolytic activation of Rim101p, which regulates pH response; role in echinocandin, azole sensitivity; similar to S. cerevisiae Vps28p, which is a subunit of the ESCRT I protein sorting complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1820132	1821101	+	orf19.211	1820132	1821101	1	1820132	1821101	1820192	1820734		orf19.7843|IPF27119.1|IPF13443.2|Contig4-2967_0012|orf6.5162|CA3036|CaO19.211|CaO19.7843|IPF13443	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1820493	1822078	-	orf19.210	1820493	1822078	1	1822078	1820493	1822064	1820685		orf19.7842|IPF27111.1|IPF13442.1|Contig4-2967_0015|orf6.5163|CA3037|CaO19.210|CaO19.7842|IPF13442	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1822223	1823193	-	orf19.209	1822223	1823193	1	1823193	1822223	1823162	1822314	DFG10	orf19.7841|IPF27115.1|IPF13438.2|Contig4-2967_0018|orf6.5164|CA3038|CaO19.7841|CaO19.209|IPF13438	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1823259	1824221	+	ntar_461	1823259	1824221	1	1823259	1824221					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1823595	1828341	-	orf19.207	1823595	1828341	1	1828341	1823595	1828161	1823947	PGA55	orf19.7838|IPF15911.3|IPF13437.3|Contig4-2967_0022|orf6.5166|orf6.5940|CA3039|CaO19.207	Putative GPI-anchored protein of unknown function; filament induced; regulated by Nrg1p, Tup1p; possibly transcriptionally regulated upon hyphal formation; mRNA binds to She3p and is localized to buds of yeast-form cells and hyphal tips [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1828960	1829530	-	ntar_462	1828960	1829530	1	1829530	1828960	1829192	1829067			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1829788	1830106	+	ntar_463	1829788	1830106	1	1829788	1830106	1829892	1830041			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1830613	1834191	-	orf19.206	1830613	1834191	1	1834191	1830613	1833836	1830690		orf19.7836|IPF12022.2|IPF8939.3|Contig4-2951_0014|orf6.129|orf6.5938|CA3622|CaO19.206|IPF12022	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1834301	1834564	-	ntar_464	1834301	1834564	1	1834564	1834301					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1837092	1837406	-	ntar_465	1837092	1837406	1	1837406	1837092	1837406	1837197			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1837111	1837865	+	ntar_466	1837111	1837865	1	1837111	1837865					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1839297	1840232	-	orf19.204	1839297	1840232	1	1840232	1839297	1840232	1839618		orf19.7834|IPF27117.1|IPF8942.1|Contig4-2951_0005|orf6.5936|CA3621|CaO19.204|CaO19.7834|IPF8942	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	1842921	1844638	+	orf19.203	1842921	1844638	1	1842921	1844638	1842962	1844473	STB3	orf19.7833|IPF27108.1|IPF9063.2|Contig4-2485_0005|Contig4-2485_0007|orf6.5935|CA3620|CaO19.7833|CaO19.203|IPF9063	Predicted ORF in Assemblies 19, 20 and 21; caspofungin induced; macrophage/pseudohyphal-repressed [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1844989	1847480	+	orf19.202	1844989	1847480	1	1844989	1847480	1845016	1847361	CDC47	orf19.7832|IPF9065.2|orf6.5934|CA3619|CaO19.202|CaO19.7832|CDC47.5|MCM7	Phosphorylated protein described as having role in control of cell division; RNA abundance regulated by tyrosol and cell density; merged with orf19.201 in Assembly 20; unmerged from orf19.201 in a revision of Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1847621	1848483	+	orf19.201	1847621	1848483	2	1847621|1847957	1847882|1848483	1847727	1848304		orf19.7831|IPF27100.1|IPF27124.1|IPF9065.2|IPF20139.1|Contig4-1852_0004|Contig4-2485_0003|Contig4-2485_0004|orf6.5933|orf6.5934	Predicted ORF in Assemblies 19, 20 and 21; unmerged from orf19.202 in a revision of Assembly 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1847988	1848313	-	ntar_467	1847988	1848313	1	1848313	1847988	1848149	1847988			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1848635	1849436	+	orf19.200	1848635	1849436	1	1848635	1849436	1848684	1849265		orf19.7830|IPF27118.1|IPF20138.1|Contig4-1852_0002|Contig4-2485_0001|orf6.5932|CA3618|CaO19.200|THO1|CaO19.7830	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1849292	1851136	-	orf19.199	1849292	1851136	1	1851136	1849292	1850993	1849458		orf19.7829|IPF27109.1|IPF9069.2|Contig4-1852_0003|Contig4-1950_0007|orf6.5931|CA3617|CaO19.7829|CaO19.199|IPF9069	Predicted ORF in Assemblies 19, 20 and 21; hyphal-induced expression; greater mRNA abundance observed in a cyr1 homozygous null mutant than in wild type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1851212	1851533	+	ntar_468	1851212	1851533	1	1851212	1851533					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1851656	1853853	-	orf19.198	1851656	1853853	1	1853853	1851656	1853558	1851837	ASN1	orf19.7828|IPF27104.1|IPF9072.3|Contig4-1950_0002|Contig4-1950_0005|orf6.209|orf6.5930|CaO19.198|CA3616|IPF19994.1	Protein described as asparagine synthetase; soluble protein in hyphae; regulated by Rim101p; decreased expression at pH 4 compared to pH 8 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1854235	1856933	-	orf19.4066	1854235	1856933	1	1856933	1854235	1856793	1854382		orf19.7826|orf19.11549|IPF23131.1|IPF9466.2|Contig4-2273_0002|orf6.207|orf6.2484|CA1139|orf19.196|CaO19.11549|CaO19.4066|IPF9466	Predicted ORF in Assemblies 19, 20 and 21; Hog1p-downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1858879	1859507	-	orf19.4067	1858879	1859507	2	1859507|1859241	1859358|1858879	1859507	1858879			 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1860072	1862569	-	orf19.4068	1860072	1862569	1	1862569	1860072	1862437	1860281		orf19.11551|IPF17322.2|IPF9462.2|orf6.2486|orf6.604|CA1140|CaO19.4068|IPF17322.3f	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1862599	1863307	-	orf19.4069	1862599	1863307	1	1863307	1862599	1863150	1862599		IPF9461.1|Contig4-2087_0005|orf6.2487|CA1141|CaO19.4069|IPF17322.5f	Predicted ORF in Assemblies 19, 20 and 21; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1863814	1864647	-	orf19.4070	1863814	1864647	1	1864647	1863814	1864647	1863814		IPF9459.1|Contig4-2087_0002|orf6.2488|CA1142|CaO19.4070|IPF9459	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr2	1864801	1865344	+	ntar_469	1864801	1865344	1	1864801	1865344					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1865590	1869294	-	orf19.4072	1865590	1869294	1	1869294	1865590	1869204	1865944	IFF6	orf19.11553|HYR1-12|IPF19647.2|IPF28532.1|orf6.2490|orf6.3209|CA1621|HYR10|CaO19.4072|IPF19647.1	Putative GPI-anchored protein of unknown function; opaque-specific transcription; macrophage-induced gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1870585	1870746	+	ntar_470	1870585	1870746	1	1870585	1870746					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1872527	1876048	-	orf19.4076	1872527	1876048	1	1876048	1872527	1875991	1872707	MET10	orf19.11557|IPF23180.1|IPF13194.2|Contig4-2114_0002|Contig4-2114_0003|Contig4-2114_0004|orf6.3204|CA1620|CaO19.4076|CaO19.11557	Predicted enzyme of sulfur amino acid metabolism; biofilm-induced expression; upregulated in the presence of human whole blood or polymorphonuclear (PMN) cells; Hog1p-induced; possibly adherence-induced [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1872767	1873502	+	ntar_471	1872767	1873502	1	1872767	1873502	1872964	1873119			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1880211	1882267	+	orf19.4077	1880211	1882267	1	1880211	1882267	1880524	1882158	MIT1	orf19.11558|SUR1|IPF2067.2|IPF28522.1|Contig4-2072_0001|Contig4-2072_0002|orf6.3203|CA1619|CaO19.11558|CaO19.4077|IPF2067	Protein involved in sphingolipid biosynthesis; required for mannosylation of inositol phosphoceramide (IPC) to form mannosylated sphingolipids MIPC and M(IP)2C; fluconazole, caspofungin induced; macrophage-downregulated gene [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1882378	1883566	+	orf19.4078	1882378	1883566	1	1882378	1883566	1882509	1883522		orf19.11559|IPF2068.3|IPF28525.1|Contig4-2072_0004|orf6.3202|CA1618|RRP45|CaO19.4078|IPF2068.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1883732	1884780	+	orf19.4079	1883732	1884780	1	1883732	1884780	1883770	1884561	SLP2	orf19.11560|IPF23156.1|IPF2071.3|orf6.48|orf6.6857|CA4337|CaO19.4079|IPF2071|IPF2071.2	Predicted ORF in Assemblies 19, 20 and 21; similar to stomatin mechanoreception protein [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1884965	1886262	+	orf19.4080	1884965	1886262	1	1884965	1886262	1884991	1886055		orf19.11561|IPF2072.2|IPF28524.1|Contig4-3095_0004|orf6.49|orf6.6856|CA0006|CaO19.4080|IPF2072	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1886095	1886886	-	ntar_1415	1886095	1886886	3	1886886|1886620|1886489	1886720|1886595|1886095					 [label_first_exon=CGD label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1887648	1887862	+	ntar_472	1887648	1887862	1	1887648	1887862					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1888132	1888223	+	tp(ugg)2	1888132	1888223	2	1888132|1888188	1888167|1888223				tP(UGG)2.2	tRNA-Pro predicted by tRNAscan-SE [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1889255	1889755	+	orf19.4081	1889255	1889755	1	1889255	1889755	1889255	1889755		orf19.11562|IPF23165.1|IPF2074.1|Contig4-3095_0009|orf6.6855|CaO19.4081|CaO19.11562	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1889941	1890859	+	orf19.4082	1889941	1890859	1	1889941	1890859	1889969	1890607	DDR48	orf19.11563|orf6.6854|DDR99|IPF23163.1|IPF2075.1|Contig4-3095_0012|CA4336|CaO19.11563|CaO19.4082	Immunogenic stress-associated protein; regulated by filamentous growth pathways; induced by benomyl, caspofungin, or in azole-resistant strain; Hog1p, farnesol, alkaline downregulated; similar to S. cerevisiae Ddr48p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1890822	1892346	-	orf19.4084	1890822	1892346	1	1892346	1890822	1892346	1891108	KIS1	orf19.11565|IPF2078.2|IPF2079.2|Contig4-3095_0014|orf6.6852|CA4335|CaO19.4084|CaO19.11565|GAL83	Scaffold protein of Snf1p complex; similar to S. cerevisiae Gal83p and Sip2p, with regions of similarity to Sip1p (ASC and KIS domain); interacts with Snf4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1892623	1893264	-	orf19.4085	1892623	1893264	1	1893264	1892623	1893264	1892623		orf19.11566|IPF23162.1|IPF2082.1|Contig4-3095_0017|orf6.6851|CA4334|CaO19.11566|CaO19.4085|IPF2082	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1893345	1894291	+	orf19.4086	1893345	1894291	1	1893345	1894291	1893508	1894158		orf19.11567|IPF23158.1|IPF2083.1|Contig4-3095_0019|orf6.6850|CA4333|CaO19.4086|CaO19.11567|IPF2083	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1893978	1895067	-	orf19.4088	1893978	1895067	1	1895067	1893978	1895034	1894228		orf19.11569|IPF23157.1|IPF2085.2|Contig4-3095_0020|orf6.6848|CA4332|GLO2|CaO19.11569|CaO19.4088	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1895199	1896611	-	orf19.4089	1895199	1896611	1	1896611	1895199	1896546	1895305	SGT1	orf19.11570|IPF23147.1|IPF2086.2|Contig4-3095_0023|orf6.6847|CA4331|CaO19.4089|CaO19.11570|IPF2086	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to radicicol [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1896701	1898443	-	orf19.4090	1896701	1898443	1	1898443	1896701	1898304	1896799		orf19.11571|IPF23141.1|IPF2087.2|Contig4-3095_0024|orf6.6846|CA4330|CaO19.11571|CaO19.4090|IPF2087	Predicted membrane transporter, member of the fucose:proton symporter (FHS) family, major facilitator superfamily (MFS) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1896732	1898410	+	ntar_473	1896732	1898410	1	1896732	1898410	1898006	1898143			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1898796	1899280	+	orf19.4090.1	1898796	1899280	2	1898796|1899011	1898937|1899280	1898915	1899227		IPF23132.1|IPF2089.1|orf6.3612|CA4329|VMA21	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1899317	1900526	+	orf19.4091	1899317	1900526	1	1899317	1900526	1899344	1900399		orf19.11572|IPF23149.1|IPF2090.2|Contig4-3095_0028|orf6.6845|CA4328|CaO19.4091|CaO19.11572|IPF2090	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1900133	1900984	-	orf19.4092	1900133	1900984	1	1900984	1900133	1900948	1900451		orf19.11573|IPF23172.1|IPF2091.2|Contig4-3095_0029|orf6.6844|CA4327|CaO19.4092|CaO19.11573|IPF2091	Predicted ORF in Assemblies 19, 20 and 21; decreased transcription is observed upon fluphenazine treatment or in an azole-resistant strain that overexpresses CDR1 and CDR2 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1901099	1902980	-	orf19.4093	1901099	1902980	1	1902980	1901099	1902937	1901174	NOP7	orf19.11574|IPF23138.1|IPF2093.2|Contig4-3095_0030|orf6.6843|CA4326|PES1|CaO19.11574|CaO19.4093|IPF2093	Pescadillo homolog required for filament-to-yeast switching; mutation confers hypersensitivity to 5-fluorocytosine (5-FC), 5-fluorouracil (5-FU), and tubercidin (7-deazaadenosine) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1903216	1903707	-	orf19.4094	1903216	1903707	1	1903707	1903216	1903707	1903216		orf19.11575|IPF23168.1|IPF2094.2|Contig4-3095_0032|orf6.6842|CA4325|CaO19.4094|CaO19.11575|IPF2094	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1903875	1904327	+	orf19.4095	1903875	1904327	1	1903875	1904327	1903875	1904327		orf19.11576|IPF23171.1|IPF2095.2|Contig4-3095_0033|orf6.6841|CA4324|CaO19.11576|CaO19.4095|IPF2095	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1904485	1906078	+	orf19.4096	1904485	1906078	1	1904485	1906078	1904546	1905778		orf19.11577|IPF23146.1|IPF2096.2|Contig4-3095_0037|orf6.6840|CA4323|CaO19.11577|CaO19.4096|IPF2096	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1905912	1906111	-	ntar_474	1905912	1906111	1	1906111	1905912					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1906182	1908876	+	orf19.4097	1906182	1908876	1	1906182	1908876	1906243	1908816		orf19.11578|IPF23130.1|IPF2097.2|Contig4-3095_0039|Contig4-3095_0040|orf6.6839|CA4322|CaO19.4097|CaO19.11578|IPF2097	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1908791	1910979	-	orf19.564	1908791	1910979	1	1910979	1908791	1910923	1908860	KAR3	orf19.11581|IPF23152.1|IPF2100.1|Contig4-3095_0041|orf6.368|orf6.6836|CA4321|orf19.4100|CA0058|IPF3770|IPF3770.2	Kinesin-like microtubule motor protein; required for nuclear fusion during mating; C-terminal motor domain; not essential for viability; homozygous null has high-frequency white-opaque switching phenotype [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1911169	1912170	+	orf19.563	1911169	1912170	1	1911169	1912170	1911231	1911998	RRP15	Contig4-3095_0042|orf6.367|CaO19.563|CA0057|IPF3767|IPF3767.1	Predicted ORF in Assemblies 19, 20 and 21; decreased expression in response to prostaglandins [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1912252	1913353	+	orf19.1597	1912252	1913353	1	1912252	1913353	1912340	1913206	ABG1	orf19.9165|IPF25726.1|IPF3765.3|Contig4-3095_0044|orf6.1085|CA0299|CaO19.1597|CaO19.9165|IPF3765.3eoc|IPF3765|IPF3765.2	Vacuolar membrane protein; depletion causes abnormal vacuolar morphology, cell separation defect, sensitivity to cell wall perturbation, and increased hyphal branching; essential gene with no mammalian homolog; Cyr1p-regulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1913126	1914828	-	orf19.1598	1913126	1914828	1	1914828	1913126	1914692	1913346	ERG24	orf19.9166|IPF25723.1|IPF3764.2|Contig4-3095_0045|orf6.1086|orf6.1911|CA0300|CaO19.9166|CaO19.1598	C-14 sterol reductase, has a role in ergosterol biosynthesis; mutation confers increased sensitivity to dyclonine [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1915010	1915427	-	ntar_475	1915010	1915427	1	1915427	1915010					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1917230	1917427	+	ntar_476	1917230	1917427	1	1917230	1917427	1917249	1917395			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1918072	1918428	+	orf19.1599	1918072	1918428	1	1918072	1918428	1918072	1918428		orf19.9167|IPF3759.2|IPF29393.1|Contig4-3095_0048|orf6.1648|CaO19.1599	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	1918754	1921595	+	orf19.1600	1918754	1921595	1	1918754	1921595	1919281	1921410		orf19.9168|IPF25722.1|IPF19700.1|Contig4-3095_0049|Contig4-3095_0051|orf6.1649|CA0614|CaO19.9168|CaO19.1600|IPF19700	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1921227	1921397	-	ntar_477	1921227	1921397	1	1921397	1921227					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1921910	1923165	+	orf19.1601	1921910	1923165	1	1921910	1923165	1921934	1923103	RPL3	orf19.9169|IPF25724.1|IPF6742.1|Contig4-3095_0054|orf6.1650|CA0615|CaO19.1601|CaO19.9169	Putative ribosomal protein; similar to S. cerevisiae Rpl3p; gene induced by ciclopirox olamine treatment; genes encoding cytoplasmic ribosomal subunits are downregulated upon phagocytosis by murine macrophage [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1923985	1924184	+	ntar_478	1923985	1924184	1	1923985	1924184					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1924256	1924773	+	ntar_479	1924256	1924773	1	1924256	1924773	1924256	1924531			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1925091	1925456	+	ntar_480	1925091	1925456	1	1925091	1925456					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1930174	1933641	-	orf19.1604	1930174	1933641	2	1933641|1933233	1933469|1930174	1933514	1930310		orf19.9172|IPF25717.1|IPF6730.2|Contig4-3095_0062|Contig4-3095_0063|orf6.2453|CA1121|CaO19.1604|CaO19.9172|IPF6730	Predicted ORF in Assemblies 19, 20 and 21; Gal4p-like DNA-binding domain [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1935817	1936510	+	ntar_481	1935817	1936510	1	1935817	1936510					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1936424	1939413	-	orf19.1605	1936424	1939413	1	1939413	1936424	1939349	1936617	PMS1	orf19.9173|IPF25719.1|IPF6724.1|Contig4-3095_0066|orf6.2454|CA1122|CaO19.1605|CaO19.9173|PMS1.3eoc|PMS1.3	Protein described as DNA mismatch repair factor; ortholog of S. cerevisiae PMS1 which is an ATP-binding protein involved in DNA mismatch repair [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	1939600	1940639	+	orf19.1406	1939600	1940639	1	1939600	1940639	1939666	1940436		orf19.8984|IPF25961.1|IPF19974.1|Contig4-2113_0005|Contig4-2113_0006|orf6.5359|CA3178|CaO19.8984|REV7|CaO19.1406|IPF19974	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1939881	1940646	-	ntar_482	1939881	1940646	1	1940646	1939881	1940603	1940433			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1940825	1941993	+	orf19.1405	1940825	1941993	1	1940825	1941993	1940951	1941916	PHO13	orf19.8983|IPF25952.1|IPF11589.2|Contig4-2113_0004|orf6.5358|CA3177|CaO19.8983|PHO132|CaO19.1405|IPF11589	Transcription is regulated upon yeast-hyphal switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1942078	1943561	+	orf19.1404	1942078	1943561	1	1942078	1943561	1942108	1943511		orf19.8982|IPF25946.1|IPF11588.2|Contig4-2113_0003|orf6.5357|CA3176|CaO19.1404|DUS1|CaO19.8982|IPF11588	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1943491	1945486	-	orf19.1403	1943491	1945486	1	1945486	1943491	1945393	1943675		orf19.8981|IPF25937.1|IPF11587.2|Contig4-2113_0002|orf6.5356|CA3175|CaO19.8981|CaO19.1403|IPF11587	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1946035	1947902	-	orf19.1402	1946035	1947902	1	1947902	1946035	1947860	1946280	CCT2	orf19.8980|IPF25943.1|IPF11584.2|Contig4-2651_0001|orf6.5355|CA3174|CaO19.1402|CaO19.8980	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in exponential and stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1951311	1953653	+	orf19.1401	1951311	1953653	1	1951311	1953653	1951311	1953272	EAP1	orf6.5354|PGA47|IPF7676.3|IPF14145.2|Contig4-2651_0004|CA3173|CaO19.1401|IPF14145	Cell wall adhesin required for cell-cell adhesion and biofilm formation; GPI anchored; Efg1p-regulated; suppresses polystyrene or cell adhesion, filamentation, invasive growth defects of S. cerevisiae flo8 or flo11 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	1953556	1954352	-	ntar_1429	1953556	1954352	2	1954352|1953840	1954291|1953556					 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1954610	1957225	-	orf19.1400	1954610	1957225	1	1957225	1954610	1957138	1954895		orf19.8978|IPF25931.1|IPF7679.2|Contig4-2842_0014|orf6.5353|CA3172|CaO19.1400|CSN2|CaO19.8978|IPF7676	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1957428	1959772	-	orf19.1397	1957428	1959772	1	1959772	1957428	1958644	1957934		orf19.8975|IPF25962.1|IPF7681.2|Contig4-2842_0012|orf6.5350|CA3171|CaO19.1397|CaO19.8975|IPF7681	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1959636	1960319	+	ntar_483	1959636	1960319	1	1959636	1960319					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1960444	1962153	+	orf19.1396	1960444	1962153	1	1960444	1962153	1960784	1961947		orf19.8974|IPF25950.1|IPF7685.2|Contig4-2842_0005|orf6.5349|CA3170|AGE2|CaO19.8974|CaO19.1396|IPF7685	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1962006	1963383	-	orf19.1395	1962006	1963383	1	1963383	1962006	1963177	1962161		orf19.8973|IPF11059.2|IPF7686.2|Contig4-2842_0004|orf6.5348|CA3169|CaO19.8973|CaO19.1395|IPF7686|CA0993|IPF11059|IPF11059.1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1965639	1966674	-	orf19.1394	1965639	1966674	1	1966674	1965639	1966535	1966035		orf19.8972|IPF11063.2|IPF29472.1|orf6.2246|orf6.5347|YCR090|CA0992|CaO19.1394|IPF11063	Protein not essential for viability; protein level decreased in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1967279	1968806	+	orf19.1393	1967279	1968806	1	1967279	1968806	1967614	1968714		orf19.8971|IPF11065.2|IPF18374.2|Contig4-2636_0009|orf6.2245|orf6.5346|CA0991|CaO19.1393|IPF11065	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1968728	1968966	-	ntar_484	1968728	1968966	1	1968966	1968728					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1968909	1971388	+	orf19.1392	1968909	1971388	1	1968909	1971388	1969059	1971272		orf19.8970|IPF25932.1|IPF11068.1|Contig4-2636_0008|orf6.2244|CA0990|CaO19.8970|EPS1|CaO19.1392|IPF11068	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1970690	1971979	-	orf19.1391	1970690	1971979	1	1971979	1970690	1971768	1971259		orf19.8969|IPF25966.1|IPF11069.2|Contig4-2636_0007|orf6.2243|CA0989|CaO19.8969|CaO19.1391|IPF11069	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1972438	1974093	+	orf19.1390	1972438	1974093	1	1972438	1974093	1972502	1973827	PMI1	orf19.8968|PMI40|IPF19894.1|IPF11071.3|Contig4-2636_0003|Contig4-2636_0004|MPI|orf6.2074|orf6.2242|CA0988|CaO19.1390	Phosphomannose isomerase; cell wall biosynthesis enzyme; drug target; functional homolog of S. cerevisiae and E. coli phosphomannose isomerase; Gcn4p-regulated; repressed by 3-AT; induced on adherence to polystyrene, phagocytosis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1974401	1975416	+	orf19.1389	1974401	1975416	1	1974401	1975416	1974713	1975204		orf19.8967|IPF18804.2|IPF12381.2|Contig4-2576_0010|orf6.2075|orf6.2241|CA0885|CaO19.1389|SGN11|IPF12381	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1977023	1977334	+	ntar_485	1977023	1977334	1	1977023	1977334	1977081	1977230			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	1977684	1978562	+	orf19.1388	1977684	1978562	1	1977684	1978562	1977755	1978411		orf19.8966|IPF25964.1|IPF12382.2|Contig4-2576_0005|orf6.2076|CA0886|CaO19.8966|CaO19.1388|IPF12382	Predicted ORF in Assemblies 19, 20 and 21; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1978247	1979422	-	orf19.1387	1978247	1979422	1	1979422	1978247	1979358	1978474		orf19.8965|IPF25954.1|IPF12383.2|Contig4-2576_0004|orf6.2077|CA0887|CaO19.1387|CaO19.8965|IPF12383	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1979563	1980381	+	orf19.1386	1979563	1980381	1	1979563	1980381	1979774	1980226		orf19.8964|IPF25970.1|IPF12385.1|Contig4-2576_0003|orf6.2078|CA0888|CaO19.1386|BET1	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1980156	1982441	-	orf19.1383	1980156	1982441	1	1982441	1980156	1982337	1980394		orf19.8963|IPF12388.1|IPF14542.1|IPF12387.1|Contig4-1457_0003|Contig4-1457_0005|Contig4-2576_0002|orf6.2081|orf6.2080|orf6.4169|CA6254|CA2316|orf19.1384|CaO19.1383|IPF14542.5f	Predicted ORF in Assemblies 19, 20 and 21; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1982580	1983818	+	orf19.1382	1982580	1983818	1	1982580	1983818	1982716	1983696	YEA4	orf19.8962|IPF14544.2|IPF12389.2|Contig4-2576_0001|orf6.2082|orf6.4168|CA2315|CaO19.1382	Protein similar to S. cerevisiae Yea4p; transcription is induced in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1983612	1985259	-	orf19.1381	1983612	1985259	1	1985259	1983612	1985123	1983729		orf19.8961|IPF25947.1|IPF14545.2|orf6.4167|CA2314|LSB5|CaO19.1381|CaO19.8961|IPF14545	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1985608	1987995	+	orf19.1378	1985608	1987995	1	1985608	1987995	1985719	1987884	SUP35	orf19.8958|IPF25930.1|IPF19754.1|Contig4-2434_0007|orf6.4164|CA2313|CaO19.8958|CaO19.1378|ERF3	Translation factor eRF3; shows prion-like aggregation in some, not all, studies; partially complements S. cerevisiae sup35 mutant translation defect; species barrier with S. cerevisiae Sup35p prion; gene not regulated by yeast-hyphal switch [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1987862	1989080	-	orf19.1377	1987862	1989080	1	1989080	1987862	1989007	1987955	IPK2	orf19.8957|IPF25956.1|IPF16498.2|Contig4-2434_0006|orf6.4163|CA2312|CaO19.8957|ARG82|CaO19.1377|IPF16498	Predicted ORF in Assemblies 19, 20 and 21; moderately induced at 42 deg [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1989661	1991229	+	orf19.1376	1989661	1991229	1	1989661	1991229	1989931	1990818		orf19.8956|IPF25959.1|IPF16993.2|Contig4-2434_0002|Contig4-2434_0003|orf6.4162|CA2311|SSO2|CaO19.8956|CaO19.1376	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	1992133	1994191	+	orf19.1375	1992133	1994191	1	1992133	1994191	1992236	1993957	LEU42	orf19.8955|IPF25939.1|IPF9877.2|Contig4-2586_0001|orf6.4161|LEU6|CA2310|CaO19.1375|CaO19.8955	Putative alpha-isopropylmalate synthase; fungal-specific (no human/murine homolog); upregulated in the presence of human blood or polymorphonuclear cells; regulated by Gcn2p and Gcn4p; detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1994376	1995450	+	orf19.1374	1994376	1995450	1	1994376	1995450	1994421	1994993		orf19.8954|IPF25965.1|IPF9875.2|Contig4-2586_0002|orf6.4160|CA2309|CaO19.8954|CaO19.1374|IPF9875	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1994899	1998001	-	orf19.1373	1994899	1998001	1	1998001	1994899	1997964	1995004	INP51	orf19.8953|IPF9874.2|IPF9872.3|Contig4-2586_0004|Contig4-2586_0005|orf6.1145|orf6.4159|CA2308|CaO19.1373|IPF9874.3	Putative phosphatidylinositol-4,5-bisphosphate phosphatase; involved in maintenance of phosphoinositide levels; affects hyphal growth, virulence, cell integrity; interacts with Irs4p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1998083	1999021	-	orf19.1372	1998083	1999021	1	1999021	1998083	1998958	1998239		orf19.8952|orf6.1146|IPF9870.2|Contig4-2586_0007|orf6.4158|orf6.530|CA6249|CaO19.1372|IPF9870	Gene transcription regulated by Mig1p and Tup1p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	1999481	2001124	+	orf19.1371	1999481	2001124	1	1999481	2001124	1999532	2000998		orf19.8951|IPF25945.1|IPF9869.2|orf6.1147|orf6.4157|CA0336|CaO19.1371|IPF9869	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=true scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	2001099	2002216	-	orf19.1370	2001099	2002216	1	2002216	2001099	2002164	2001301		orf19.8950|IPF18486.2|IPF9867.2|Contig4-1943_0002|orf6.1148|orf6.4156|CA0337|CaO19.1370|IPF9867	Predicted ORF in Assemblies 19, 20 and 21; expression is regulated upon white-opaque switching; transcription is repressed in response to alpha pheromone in SpiderM medium [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2003124	2004647	-	orf19.1369	2003124	2004647	1	2004647	2003124	2004475	2003171		orf19.8949|IPF8976.2|IPF19035.2|Contig4-2176_0002|orf6.1149|orf6.5301|CA3137|PYD3|CaO19.1369|IPF8976	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2009292	2011234	+	orf19.1368	2009292	2011234	1	2009292	2011234	2009389	2011215		orf19.8948|IPF25936.1|IPF8985.3|Contig4-2532_0008|orf6.291|orf6.5300|CA0045|CaO19.1368|IPF8985|IPF8985.5eoc|IPF8985.2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	2012594	2013050	-	orf19.1367.1	2012594	2013050	1	2013050	2012594	2012969	2012727			ORF added to Assembly 21 based on comparative genome analysis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2013155	2014465	+	orf19.1367	2013155	2014465	1	2013155	2014465	2013271	2014215	MTW1	orf19.8947|IPF25955.1|IPF8989.1|Contig4-2532_0004|orf6.5299|CA3136|CaO19.1367|CaO19.8947|IPF8989	Kinetochore component; amount of Nuf2p and Mtw1p protein detected at each centromere is consistent with a single kinetochore microtubule attachment site [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2014327	2015586	-	orf19.1366	2014327	2015586	1	2015586	2014327	2015586	2014327		orf19.8946|IPF25949.1|IPF8990.1|Contig4-2532_0003|orf6.5298|CA3135|CaO19.1366|CaO19.8946|IPF8990	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	2015944	2017517	-	orf19.1365	2015944	2017517	1	2017517	2015944	2017517	2015997		orf19.8945|IPF25944.1|IPF19972.1|Contig4-1729_0002|Contig4-2532_0001|orf6.5297|CA3134|CaO19.1365|SOX1|CaO19.8945|IFZ2|IPF11499.repeat2	Predicted ORF in Assemblies 19, 20 and 21; mutation confers hypersensitivity to toxic ergosterol analog; constitutive expression independent of MTL or white-opaque status [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	2018693	2020004	+	orf19.1364	2018693	2020004	1	2018693	2020004	2018811	2019848		orf19.8944|IPF25957.1|IPF16939.2|Contig4-1729_0001|orf6.5296|CA3133|YBR147w|CaO19.1364|CaO19.8944|IPF16939	Predicted ORF in Assemblies 19, 20 and 21; constitutive expression independent of MTL or white-opaque status [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2020423	2021601	-	orf19.1363	2020423	2021601	1	2021601	2020423	2021601	2020423		orf19.8943|IPF25951.1|IPF8904.2|Contig4-2717_0017|orf6.5295|CA3132|CaO19.8943|CaO19.1363|IPF8904	Predicted ORF in Assemblies 19, 20 and 21; Plc1p-regulated; transcriptionally activated by Mnl1p under weak acid stress [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=E scenario_last_exon=E]
Ca21chr2	2024168	2025610	+	orf19.1362	2024168	2025610	1	2024168	2025610	2024187	2025488	SMM1	orf19.8942|IPF25948.1|IPF8910.2|Contig4-2717_0007|orf6.5294|CA3131|CaO19.8942|CaO19.1362|IPF8910	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in both intermediate and mature biofilms [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2025564	2026529	-	orf19.1361	2025564	2026529	1	2026529	2025564	2026312	2025656		orf19.8941|IPF25963.1|IPF8911.2|Contig4-2717_0005|orf6.5293|CA3130|CaO19.8941|TIM23|CaO19.1361	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2026717	2027200	-	orf19.1360.1	2026717	2027200	1	2027200	2026717	2027115	2026933		IPF25933.1|IPF8912.1|Contig4-2717_0004|CA3129|OST4	ORF Predicted by Annotation Working Group [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2027337	2028093	+	orf19.1360	2027337	2028093	1	2027337	2028093	2027376	2027864		orf19.8940|IPF25969.1|IPF8914.1|Contig4-2717_0003|orf6.5292|CA3128|CaO19.8940|CaO19.1360|IPF8914	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2028114	2029916	+	orf19.1359	2028114	2029916	1	2028114	2029916	2028114	2029865		orf19.8939|IPF25938.1|IPF8915.1|Contig4-2717_0001|orf6.5291|CA3127|CaO19.1359|CaO19.8939|IPF8915	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2030140	2030390	+	ntar_486	2030140	2030390	1	2030140	2030390					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2030706	2032361	+	orf19.1358	2030706	2032361	1	2030706	2032361	2031301	2032272	GCN4	orf19.8938|IPF25958.1|IPF8919.2|Contig4-1860_0002|orf6.5290|CA3126|CaO19.1358|CaO19.8938	Transcriptional activator of general amino acid control response; required for Efg1p-dependent pseudohyphal filament induction by amino acid starvation but not by serum; upregulated in the presence of human whole blood or PMN cells [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2032551	2033122	-	ntar_487	2032551	2033122	1	2033122	2032551					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2032797	2033009	+	ntar_488	2032797	2033009	1	2032797	2033009					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2033465	2033872	+	ntar_489	2033465	2033872	1	2033465	2033872					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2034441	2036490	+	orf19.1357	2034441	2036490	1	2034441	2036490	2034842	2036386	FCY21	orf19.8937|FCY22|IPF17673.3|IPF8921.2|IPF17777.2|IPF17779.2|Contig4-1860_0007|Contig4-1860_0009|orf6.1000|orf6.332|CA6188|FCY2|FCY21.3f	High affinity, high capacity, hypoxanthine-adenine-guanine-cytosine/ H+ symporter; purine-cytosine permease of pyrimidine salvage; similar to S. cerevisiae Fcy2p; mutation confers resistance to 5-fluorocytosine (5-FC) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2036789	2037957	+	orf19.1356	2036789	2037957	1	2036789	2037957	2036830	2037837		orf19.8936|IPF17674.1|IPF17112.2|Contig4-1977_0002|Contig4-1977_0003|orf6.1001|orf6.331|CA0258|CaO19.1356|MST2|IPF17112	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2037892	2039631	-	orf19.1355	2037892	2039631	1	2039631	2037892	2039304	2038261		orf19.8935|IPF25953.1|IPF17111.1|Contig4-1977_0005|orf6.1002|CA0259|CaO19.8935|SOL2|CaO19.1355|SOL1	Predicted ORF in Assemblies 19, 20 and 21; protein detected by mass spec in stationary phase cultures [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2039909	2040085	+	ntar_490	2039909	2040085	1	2039909	2040085					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2040057	2040549	-	ntar_491	2040057	2040549	1	2040549	2040057	2040309	2040094			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2040859	2041039	+	ntar_492	2040859	2041039	1	2040859	2041039					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2041549	2042986	+	orf19.1785	2041549	2042986	1	2041549	2042986	2041670	2042650		orf19.9351|IPF13018.3|IPF13017.2|Contig4-2624_0006|orf6.214|orf6.2532|CA1168|CaO19.9351|CaO19.1785|IPF13017	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2041977	2042740	-	ntar_493	2041977	2042740	1	2042740	2041977					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2042855	2047509	-	orf19.1783	2042855	2047509	1	2047509	2042855	2047410	2042944	YOR1	orf19.9349|orf19.9350|IPF16207.2|IPF25550.1|IPF13015.2|IPF13016.2|Contig4-2624_0003|Contig4-2624_0004|orf6.2530|orf6.2531|orf6.531|CA6193|CA6194|orf19.1784|YOR1.5f	Protein similar to S. cerevisiae Yor1p, which is a plasma membrane transporter of the ATP-binding cassette (ABC) family involved in resistance to aureobasidin A; transcription is specific to white cell type [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2047932	2048177	+	ntar_494	2047932	2048177	1	2047932	2048177					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2048611	2049308	-	orf19.1782.1	2048611	2049308	2	2049308|2049220	2049301|2048611	2049308	2048611			ORF added to Assembly 21 based on comparative genome analysis; has intron [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	2048811	2049045	+	ntar_495	2048811	2049045	1	2048811	2049045	2048923	2049045			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2049400	2050403	-	orf19.1782	2049400	2050403	1	2050403	2049400	2050319	2049600		orf19.9348|IPF16210.3|IPF16646.2|Contig4-1793_0006|Contig4-2624_0009|orf6.2529|CA1167|CaO19.1782|IPF16646	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	2049406	2049707	+	ntar_496	2049406	2049707	1	2049406	2049707	2049573	2049707			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2050687	2051925	-	orf19.1780	2050687	2051925	1	2051925	2050687	2051925	2050687		orf19.9346|IPF25562.1|IPF16648.1|Contig4-1793_0004|orf6.2527|CA1166|CaO19.1780|CaO19.9346|IFO1	[NOT TRANSCRIBED?] Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	2053354	2054822	-	orf19.1779	2053354	2054822	1	2054822	2053354	2054703	2053567	MP65	orf19.9345|SCW1|SCW10|IPF15898.1|IPF9023.3|Contig4-1875_0004|orf6.2667|CA0156|CA6263|SCW1.5f|CMP65|CaO19.1779|SCW1.3f|orf6.708	Cell surface mannoprotein; mycelial antigen; possible role in cell-wall glucan metabolism; has adhesin motif; O-glycosylation but no predicted N-glycosylation; induced by heat, upon germ tube formation, wall regeneration; diagnostic marker [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2056276	2056590	+	orf19.1778	2056276	2056590	1	2056276	2056590	2056276	2056590		IPF15902.2|orf6.2666|CaO19.1778	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	2057720	2062397	+	orf19.1777	2057720	2062397	1	2057720	2062397	2058113	2062261		orf19.9344|IPF25575.1|IPF9029.2|Contig4-2728_0007|orf6.2665|CA1256|CaO19.1777|UBP15|CaO19.9344	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2062302	2064365	-	orf19.1776	2062302	2064365	1	2064365	2062302	2063383	2062415		orf19.9343|IPF25566.1|IPF9030.2|Contig4-2728_0006|orf6.2664|CA1255|CaO19.1776|CaO19.9343|IPF9030	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2064664	2066077	+	orf19.1774	2064664	2066077	1	2064664	2066077	2064862	2066004		IPF9033.1|IPF9034.1|Contig4-2728_0003|orf6.2662|orf6.2663|CA1253|CA1254|orf19.1775|CA0636|CA0639|FDH3.3f|FDH4.3f|IPF18026.2	Predicted ORF in Assemblies 19, 20 and 21; transcription is upregulated in an RHE model of oral candidiasis; virulence-group-correlated expression [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2066160	2066681	-	ntar_497	2066160	2066681	1	2066681	2066160	2066681	2066529			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2066856	2068533	+	orf19.1773	2066856	2068533	1	2066856	2068533	2066997	2068286	RAP1	orf19.9342|IPF9036.2|IPF19909.2|Contig4-2933_0003|orf6.1679|orf6.2661|CA0635|CaO19.1773|IPF9036	Protein similar to (but shorter than) S. cerevisiae Rap1p, a transcriptional regulator that binds telomeres and regulatory sequences; binds DNA; represses hyphal growth under yeast-favoring conditions [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2068465	2071552	-	orf19.1772	2068465	2071552	1	2071552	2068465	2071552	2068598		orf19.9341|IPF25546.1|IPF16267.2|Contig4-1808_0003|orf6.1678|CA0634|CaO19.1772|CaO19.9341|IPF16267	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=I scenario_last_exon=I]
Ca21chr2	2071675	2073776	+	orf19.1771	2071675	2073776	1	2071675	2073776	2071722	2073668		orf19.9340|IPF16269.2|IPF29311.1|Contig4-1714_0001|Contig4-1714_0002|orf6.1677|CA0633|CaO19.1771|CWC22|IPF16269	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	2073301	2073483	-	ntar_498	2073301	2073483	1	2073483	2073301	2073483	2073310			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2073887	2074323	-	ntar_499	2073887	2074323	1	2074323	2073887	2074009	2073887			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2074634	2075497	+	orf19.1770	2074634	2075497	1	2074634	2075497	2074774	2075106	CYC1	orf19.9339|orf6.244|IPF25577.1|IPF17424.2|Contig4-1661_0006|CA0038|CaO19.1770|CaO19.9339	Cytochrome c; complements defects of an S. cerevisiae cyc1 cyc7 double mutant; transcriptionally regulated by iron; expression greater in high iron; alkaline downregulated; repressed by nitric oxide [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2075713	2076974	+	orf19.1769	2075713	2076974	1	2075713	2076974	2075839	2076636		orf19.9338|IPF17476.2|IPF17425.2|Contig4-1661_0003|orf6.245|orf6.2868|CA1389|PLP2|CaO19.1769	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2076182	2076755	-	ntar_500	2076182	2076755	1	2076755	2076182	2076349	2076182			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2077093	2080353	+	orf19.1768	2077093	2080353	1	2077093	2080353	2077093	2080227		orf19.9337|IPF25564.1|IPF25556.1|IPF6151.2|IPF17474.2|Contig4-1661_0001|Contig4-2062_0011|orf6.2869|CA1390|IPF17474.5f|IPF17474	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=D scenario_last_exon=D]
Ca21chr2	2080524	2080761	-	ntar_501	2080524	2080761	1	2080761	2080524					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2080976	2083096	+	orf19.1767	2080976	2083096	1	2080976	2083096	2081249	2083090		orf19.9336|IPF25557.1|IPF6149.2|Contig4-2062_0005|Contig4-2062_0006|orf6.2870|CA1392|CaO19.9336|CaO19.1767|IPF6149	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	2083085	2083413	-	ntar_502	2083085	2083413	1	2083413	2083085					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2084490	2085695	+	orf19.1766	2084490	2085695	1	2084490	2085695	2084490	2085695		orf19.9335|IPF25563.1|IPF6146.2|Contig4-2031_0001|orf6.2871|CA1393|CaO19.9335|CaO19.1766|IFO3	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	2085834	2086104	-	ntar_503	2085834	2086104	1	2086104	2085834					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2088477	2090189	+	orf19.1765	2088477	2090189	1	2088477	2090189	2088810	2090066		orf19.9334|IPF19560.1|IPF19561.2|Contig4-2450_0006|orf6.189|orf6.2872|CA1394|CaO19.1765|IFO2	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	2090060	2091745	-	orf19.1764	2090060	2091745	1	2091745	2090060	2091410	2090562		orf19.9333|IPF16551.2|IPF29314.1|Contig4-2450_0007|orf6.2873|orf6.4085|CA6192|CaO19.1764|IPF29314	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2093348	2094460	+	orf19.1763	2093348	2094460	1	2093348	2094460	2093348	2094460	IFR1	orf19.9332|IPF17558.3|IPF17956.2|orf6.4086|CA2258|FZD5|CaO19.1763|CA1395|IPF17558|IPF17558.2	Predicted ORF in Assemblies 19, 20 and 21; induced by nitric oxide [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=J scenario_last_exon=J]
Ca21chr2	2094402	2095579	-	orf19.1762	2094402	2095579	1	2095579	2094402	2095472	2094663	OCA1	orf19.9331|IPF25568.1|IPF6845.2|Contig4-1964_0001|orf6.4087|CA2259|CaO19.1762|IPF6845	Putative protein phosphatase of the PTP family (tyrosine-specific), similar to S. cerevisiae Oca1p; mutant shows virulence defect; not essential for viability [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2095729	2096510	+	orf19.1761	2095729	2096510	1	2095729	2096510	2095818	2096333		orf19.9330|IPF25572.1|IPF6848.1|Contig4-1964_0004|orf6.4088|CA2260|OST2|CaO19.9330|CaO19.1761	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2096362	2097803	-	orf19.1760	2096362	2097803	1	2097803	2096362	2097593	2096718	RAS1	orf19.9329|IPF25567.1|IPF6849.2|Contig4-1964_0005|orf6.4089|CA2261|CaO19.9329|CaO19.1760	RAS signal transduction GTPase; regulates cAMP and MAP kinase pathways; role in hyphal induction, virulence, apoptosis, heat-shock sensitivity; nonessential; glutamine-rich C terminus; complements viability of S. cerevisiae ras1 ras2 mutant [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2097930	2098448	-	ntar_504	2097930	2098448	1	2098448	2097930					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2098732	2100771	-	orf19.1759	2098732	2100771	1	2100771	2098732	2100586	2099138	PHO23	orf19.9328|IPF6854.2|IPF29313.1|Contig4-1958_0002|orf6.4090|orf6.925|CA0227|CaO19.1759	Protein not essential for viability; similar to S. cerevisiae Pho23p, which is a probable component of the Rpd3 histone deacetylase complex [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2099039	2099247	+	ntar_505	2099039	2099247	1	2099039	2099247					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2101793	2102146	+	ntar_506	2101793	2102146	1	2101793	2102146					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2102739	2104804	+	orf19.1757	2102739	2104804	1	2102739	2104804	2102914	2104665		orf19.9326|IPF25560.1|IPF6857.1|Contig4-2851_0019|orf6.4092|CA2262|CaO19.9326|CaO19.1757|IPF6857	Putative transcription factor with zinc finger DNA-binding motif; transcription is upregulated in clinical isolates from HIV+ patients with oral candidiasis [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2106621	2106939	+	ntar_507	2106621	2106939	1	2106621	2106939					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2107158	2109164	+	orf19.1756	2107158	2109164	1	2107158	2109164	2107827	2109038	GPD1	orf19.9325|IPF25561.1|IPF6860.1|Contig4-2851_0007|orf6.4093|CA2263|CaO19.1756|CaO19.9325	Protein similar to S. cerevisiae glycerol-3-phosphate dehydrogenase (enzyme of glycerol biosynthesis); biofilm-induced expression; regulated by Efg1p; regulated by Tsa1p, Tsa1Bp under H2O2 stress conditions [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2107193	2107398	-	ntar_508	2107193	2107398	1	2107398	2107193					 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2109176	2111954	-	orf19.1755	2109176	2111954	1	2111954	2109176	2111839	2109305	SET2	orf19.9324|IPF25548.1|IPF6862.2|Contig4-2851_0005|Contig4-2851_0006|orf6.4094|CA2264|CaO19.1755|CaO19.9324	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2112053	2113990	-	orf19.1754	2112053	2113990	1	2113990	2112053	2113841	2112408		orf19.9323|IPF16060.2|IPF6866.1|Contig4-2851_0003|orf6.1077|orf6.4095|CA2265|CMK2|CaO19.1754	Predicted ORF in Assemblies 19, 20 and 21 [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2114489	2116887	+	orf19.1753	2114489	2116887	1	2114489	2116887	2114501	2116780	PUS7	orf19.9322|IPF16061.2|IPF6867.2|Contig4-2851_0001|orf6.1078|orf6.4096|CA0294|CaO19.1753|IPF16061	Protein similar to S. cerevisiae tRNA modification protein; induced upon biofilm formation [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2116819	2119549	-	orf19.1751	2116819	2119549	1	2119549	2116819	2119291	2117063	SPT23	orf19.9320|IPF25551.1|IPF10741.2|orf6.1080|orf6.1828|CA0726|MGA2|CaO19.1751|IPF10741	Protein involved in regulation of unsaturated fatty acid biosynthesis; controls the expression of the Ole1p delta-9-fatty acid desaturase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2119616	2120271	+	ntar_509	2119616	2120271	1	2119616	2120271	2119616	2119831			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2120498	2122811	+	orf19.1750	2120498	2122811	2	2120498|2121881	2121038|2122811	2120962	2122595		orf19.9319|IPF25570.1|IPF10745.2|Contig4-2591_0005|Contig4-2591_0006|orf6.1827|CaO19.9319|CaO19.1750	Predicted ORF in Assemblies 19, 20 and 21; similar to mammalian SR-like RNA splicing factor; gene has intron; significant changes made to ORF with coordinate updates (see Locus History) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=F scenario_last_exon=F]
Ca21chr2	2122811	2124948	-	orf19.1748	2122811	2124948	1	2124948	2122811	2124870	2122825		orf19.9316|IPF19639.1|IPF19640.2|Contig4-2591_0004|orf6.1825|orf6.2021|CA0853|CaO19.1748|IPF19640	Predicted ORF in Assemblies 19, 20 and 21; shows colony morphology-related gene regulation by Ssn6p [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=G scenario_last_exon=G]
Ca21chr2	2125354	2127580	-	orf19.1747	2125354	2127580	1	2127580	2125354	2127438	2125441	KIP2	orf19.9315|IPF10752.2|IPF16668.3|Contig4-2591_0011|orf6.2020|orf6.86|CA0852|CaO19.1747	Protein similar to S. cerevisiae Kip2p; transcription is repressed in response to alpha pheromone in SpiderM medium; periodic mRNA expression, peak at cell-cycle G2/M phase [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2127772	2129101	+	ntar_510	2127772	2129101	1	2127772	2129101	2128312	2128587			 [label_first_exon=novel label_last_exon=novel orf_changed=false scenario_first_exon=B scenario_last_exon=B]
Ca21chr2	2127819	2129144	-	orf19.1746	2127819	2129144	1	2129144	2127819	2129144	2127819		orf19.9313|IPF16670.2|IPF10753.2|Contig4-2199_0007|orf6.2018|orf6.85|CA0851|Ca38F10.06|CaO19.1746|SSP2|IPF16670	Predicted ORF in Assemblies 19, 20 and 21; similar to S. cerevisiae meiosis-specific, spore-wall-localized protein Ssp2p, which is required for wild-type formation of outer spore wall in S. cerevisiae [label_first_exon=CGD label_last_exon=CGD orf_changed=false scenario_first_exon=Z scenario_last_exon=Z]
Ca21chr2	2129334	2130976	-	orf19.1745	2129334	2130976	1	2130976	2129334	2129898	2129404		orf19.9312|IPF16671.1|IPF15008.3|Contig4-2199_0006|orf6.2017|orf6.70|CA0850|LDG1|CaO19.1745|IPF16671	Predicted ORF in Assemblies 19, 20 and 21; possibly spurious ORF (Annotation Working Group prediction) [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2131084	2132090	+	orf19.1744	2131084	2132090	1	2131084	2132090	2131163	2131978	HEM4	orf19.9311|orf6.2016|orf6.69|IPF15006.2|IPF19454.2|Contig4-2199_0003|CA0849|CaO19.1744	Protein described as uroporphyrinogen III synthase; transcriptionally regulated by iron; expression greater in high iron or elevated CO2; alkaline downregulated [label_first_exon=CGDmod label_last_exon=CGDmod orf_changed=false scenario_first_exon=A scenario_last_exon=A]
Ca21chr2	2132019	2134537	-	orf19.1743	2132019	2134537	1	2134537	2132019	2134268	2132241	ACS1	orf19.9310|IPF25554.1|IPF15005.2|Contig4-2199_0001|orf6.2015|CA0848|CaO19.9310|CaO19.1743	Putative acetyl-CoA synthetase, similar to S. cerevisiae Acs1p; upregulated in the presence of human neutrophils; fluconazole-downregulated; regulated by Nrg1p and Mig1p; shows colony morpholo