Index of /download/homology/best_hits

Icon  Name                                                    Last modified      Size  Description
[PARENTDIR] Parent Directory                                                             -   
[TXT] C_parapsilosis_CDC317_S_pombe_best_hits.txt             2019-08-23 05:08   89K  
[TXT] C_parapsilosis_CDC317_S_cerevisiae_best_hits.txt        2025-10-16 15:25   39K  
[TXT] C_parapsilosis_CDC317_N_crassa_best_hits.txt            2025-10-16 17:00  132K  
[TXT] C_parapsilosis_CDC317_C_glabrata_CBS138_best_hits.txt   2025-10-16 17:02   57K  
[TXT] C_parapsilosis_CDC317_C_dubliniensis_CD36_best_hits.txt 2025-10-16 17:01   25K  
[TXT] C_parapsilosis_CDC317_C_auris_B8441_best_hits.txt       2025-10-16 17:01   45K  
[TXT] C_parapsilosis_CDC317_C_albicans_SC5314_best_hits.txt   2025-10-16 17:00   23K  
[TXT] C_parapsilosis_CDC317_A_nidulans_best_hits.txt          2019-08-23 05:10  117K  
[TXT] C_glabrata_CBS138_S_pombe_best_hits.txt                 2019-08-23 04:59   75K  
[TXT] C_glabrata_CBS138_S_cerevisiae_best_hits.txt            2025-10-16 13:48   15K  
[TXT] C_glabrata_CBS138_N_crassa_best_hits.txt                2025-10-16 15:21  120K  
[TXT] C_glabrata_CBS138_C_parapsilosis_CDC317_best_hits.txt   2025-10-16 15:24   52K  
[TXT] C_glabrata_CBS138_C_dubliniensis_CD36_best_hits.txt     2025-10-16 15:24   47K  
[TXT] C_glabrata_CBS138_C_auris_B8441_best_hits.txt           2025-10-16 15:23   56K  
[TXT] C_glabrata_CBS138_C_albicans_SC5314_best_hits.txt       2025-10-16 15:22   42K  
[TXT] C_glabrata_CBS138_A_nidulans_best_hits.txt              2019-08-23 05:01  107K  
[TXT] C_dubliniensis_CD36_S_pombe_best_hits.txt               2019-08-23 04:51   84K  
[TXT] C_dubliniensis_CD36_S_cerevisiae_best_hits.txt          2025-10-16 12:12   34K  
[TXT] C_dubliniensis_CD36_N_crassa_best_hits.txt              2025-10-16 13:45  123K  
[TXT] C_dubliniensis_CD36_C_parapsilosis_CDC317_best_hits.txt 2025-10-16 13:47   21K  
[TXT] C_dubliniensis_CD36_C_glabrata_CBS138_best_hits.txt     2025-10-16 13:47   51K  
[TXT] C_dubliniensis_CD36_C_auris_B8441_best_hits.txt         2025-10-16 13:46   37K  
[TXT] C_dubliniensis_CD36_C_albicans_SC5314_best_hits.txt     2025-10-16 13:46  9.8K  
[TXT] C_dubliniensis_CD36_A_nidulans_best_hits.txt            2019-08-23 04:53  109K  
[TXT] C_auris_B8441_S_pombe_best_hits.txt                     2019-08-23 05:16   76K  
[TXT] C_auris_B8441_S_cerevisiae_best_hits.txt                2025-10-16 17:03   32K  
[TXT] C_auris_B8441_N_crassa_best_hits.txt                    2025-10-16 18:36  120K  
[TXT] C_auris_B8441_C_parapsilosis_CDC317_best_hits.txt       2025-10-16 18:38   28K  
[TXT] C_auris_B8441_C_glabrata_CBS138_best_hits.txt           2025-10-16 18:38   49K  
[TXT] C_auris_B8441_C_dubliniensis_CD36_best_hits.txt         2025-10-16 18:37   24K  
[TXT] C_auris_B8441_C_albicans_SC5314_best_hits.txt           2025-10-16 18:37   21K  
[TXT] C_auris_B8441_CDC317_A_nidulans_best_hits.txt           2019-08-01 17:13    0   
[TXT] C_auris_B8441_A_nidulans_best_hits.txt                  2023-06-29 09:53  105K  
[TXT] C_albicans_SC5314_S_pombe_best_hits.txt                 2019-08-23 04:43   89K  
[TXT] C_albicans_SC5314_S_cerevisiae_best_hits.txt            2025-10-16 10:34   36K  
[TXT] C_albicans_SC5314_N_crassa_best_hits.txt                2025-10-16 12:08  133K  
[TXT] C_albicans_SC5314_C_parapsilosis_CDC317_best_hits.txt   2025-10-16 12:11   26K  
[TXT] C_albicans_SC5314_C_glabrata_CBS138_best_hits.txt       2025-10-16 12:10   55K  
[TXT] C_albicans_SC5314_C_dubliniensis_CD36_best_hits.txt     2025-10-16 12:09   13K  
[TXT] C_albicans_SC5314_C_auris_B8441_best_hits.txt           2025-10-16 12:09   40K  
[TXT] C_albicans_SC5314_A_nidulans_best_hits.txt              2019-08-23 04:45  117K  


This directory contains data related to homology among C. albicans, C. auris, 
C. dubliniensis, C. glabrata, C. parapsilosis, and between Candida species
and other organisms.

The orthology subdirectory contains data pertaining to orthology
mappings among Candida species in CGD and between Candida 
species and model yeasts S. cerevisiae and S. pombe. 

The best_hits subdirectory contains BLASTP-based mappings, which are
made with lower-stringency requirements compared to the ortholog
mappings.  If a protein lacks an ortholog in one of the other species,
we search to see if there is a best-hit.

The format of the pairwise ortholog and Best Hit files (updated
September 2012) contains three tab-delimited columns for each
organism.
For each organism, the columns display:
- the systematic name of the gene
- the standard/genetic name of the gene (if one exists)
- the database identifier for the gene

The specific procedures used for generation of these mappings is described here:
http://www.candidagenome.org/cgi-bin/reference/reference.pl?dbid=CAL0142012
These best hits data are available in the same format as the files containing
the ortholog data. The ortholog files are available at
http://www.candidagenome.org/download/homology/orthologs/