Index of /download/homology/orthologs

 Name                                       Last modified      Size  Description
 Parent Directory                                                -   
 Calb_Cdub_positional_orthologs_Assem20.txt 04-Aug-2008 14:04  121K  
 Calb_Scer_by_inparanoid/                   30-May-2008 08:56    -   

This directory contains data pertaining to orthology assignments
between C. albicans and other organisms.

Orthology mappings between C. albicans and C. dubliniensis are
contained in the file, Calb_Cdub_positional_orthologs_Assem20.txt The
ortholog mappings between C. albicans and C. dubliniensis were
provided to CGD by John Gamble and Matthew Berriman at the Wellcome
Trust Sanger Institute. The C. dubliniensis orthologs are manually
curated positional orthologs based on synteny (rather than on sequence
similarity). Assembly 20 of the C. albicans SC5314 genome sequence was
used for positional ortholog determination.

This directory also contains subdirectories that contain the input
sequences that were used to determine orthology assignments between
C. albicans (Assemblies 19, 20, or 21 respectively) and S. cerevisiae,
using InParanoid (http://inparanoid.cgb.ki.se/) and the output files
that were generated from InParanoid.  In addition, files containing
the processed output, listing orthology assignments, are also
provided. For more details, see the README documents in the
subdirectories.