Index of /download/misc

Icon  Name                          Last modified      Size  Description
[DIR] Parent Directory                                   -   
[TXT] C_albicans_codon_usage.tab    28-Sep-2007 13:25  4.2K  
[   ] orf6_long_desc_plus_GO.txt.gz 11-May-2008 18:51  298K  GZIP compressed docume>
[   ] orf6_short_desc.txt.gz        11-May-2008 18:51   90K  GZIP compressed docume>


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Codon usage table for Candida albicans Assembly 21

This table was produced with the GCG program CodonFrequency using the
orf_coding_assembly21.fasta.gz file dated 20-Sep-2007.


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orf6_short_desc.txt.gz
orf6_long_desc_plus_GO.txt.gz

The orf6_short_desc.txt and orf6_long_desc_plus_GO.txt files contain
basic information about genes in CGD.  These files are updated on a
weekly basis.

The contents of each file are as follows:

File orf6_short_desc.txt:

Column 1 : orf6 identifier 
Column 2 : orf19 identifier 
Column 3 : Gene name, if there is one 
Column 4 : Description from CGD Locus page, truncated at the first
semi-colon

File orf6_long_desc_plus_GO.txt:

Column 1 : orf6 identifier 
Column 2 : orf19 identifier 
Column 3 : Gene name, if there is one 
Column 4 : Description from CGD Locus page 
Column 5 : Biological process GO annotations, joined by '||' 
Column 6 : Cellular component GO annotations, joined by '||' 
Column 6 : Molecular function GO annotations, joined by '||'


The files are gzip compressed tab-delimited text files.  There are
several freely available software options for decompressing gzipped
files using Windows.  The software and other useful information is
available on these web sites:

- WinZip (http://www.winzip.com/) - Stuffit (http://www.stuffit.com/) -
Gzip (http://www.gzip.org/

and the gzip user's manual:
http://www.math.utah.edu/docs/info/gzip_toc.html