Index of /download/phenotype
Name Last modified Size Description
Parent Directory -
C_albicans_A21_phenotype_data.tab 2023-06-29 09:53 3.1M
C_albicans_phenotype_data.tab 2024-12-10 06:35 5.9M
C_dubliniensis_phenotype_data.tab 2024-12-10 06:43 17K
C_glabrata_phenotype_data.tab 2024-12-10 06:59 1.3M
C_parapsilosis_phenotype_data.tab 2024-12-10 07:07 54K
C_auris_phenotype_data.tab 2024-12-10 07:15 49K
The phenotype_data.tab files contain the phenotype data for all the
features in CGD. Individual species have their own phenotype file in this
directory. The format is a tab-delimited table with the following columns:
1) Feature Name (Mandatory) -The feature name of the gene
2) Feature Type (Mandatory) -The feature type of the gene
3) Gene Name (Optional) -The standard name of the gene
4) CGDID (Mandatory) -The CGDID of the gene
5) Reference (CGD_REF Required, -PMID: ####|CGD_REF: #### (separated by pipe)(one reference per row)
PMID optional)
6) Experiment Type (Mandatory) -The method used to detect and analyze the phenotype
7) Mutant Type (Mandatory) -Description of the impact of the mutation on activity of the gene product
8) Allele (Optional) -Allele name and description, if applicable
9) Strain background (mandatory) -Genetic background in which the phenotype was analyzed
10) Phenotype (Mandatory) -The feature observed and the direction of change relative to wild type
11) Chemical (Optional) -Any chemicals relevant to the phenotype
12) Condition (Optional) -Condition under which the phenotype was observed
13) Details (Optional) -Details about the phenotype
14) Reporter (Optional) -The protein(s) or RNA(s) used in an experiment to track a process
15) Anatomical Structure (Optional) -The Fungal Anatomy Ontology term
that denotes the affected structure for an anatomical phenotype
16) Virulence Model (Optional) -The model system used to assess the virulence of a mutant
17) Species
The content of the file is updated weekly. For further details about
how phenotype information is recorded, please see:
http://www.candidagenome.org/help/PhenoHelp.shtml
Please note that prior to February 24, 2010, CGD mutant phenotype data
were provided in a file named 'phenotypes_for_all_features.tab', whose
format was as follows:
- systematic name
- standard name
- primary CGDID
- mutant type
- mutant phenotype
- notes
- reference (PMID)