Candida albicans SC5314 Genome Snapshot/Overview

This page provides information on the status of the C. albicans SC5314 genome. Data on this page are updated once a day. All the data displayed on this page are available in one or more files (Chromosomal Feature File; GO Annotations File; Candida Go Slim Annotations File) on the CGD Download Data page. The Advanced Search tool can also be used to retrieve chromosomal features that match specific criteria.

1. Graphical View of Protein Coding Genes

2. Genome Inventory

3. Summary of Chromosome Sequence and Annotation Updates

4. Summary of GO annotations

5. Distribution of Gene Products by Process, Function, and Component

Graphical View of Protein Coding Genes (as of Jun 13, 2025)

4071 ORFs, 65.47%

1995 ORFs, 32.08%

152 ORFs, 2.44%

Genome Inventory (as of Jun 13, 2025)

This table reports the number and types of features annotated in CGD, per chromosome (excluding unmapped features). To get a list of all features of a certain type (e.g., Verified ORF, tRNA, etc.), select that feature type. To access more information on the individual chromosome (e.g., sequence, a listing of all features on that chromosome, etc.), select each chromosome name. (Feature types that are not yet annotated in CGD are not listed in the table below.)

Feature Type	Total	Haploid Total	Chromosome
Feature Type	Total	Haploid Total	chr1A	chr1B	chr2A	chr2B	chr3A	chr3B	chr4A	chr4B	chr5A	chr5B	chr6A	chr6B	chr7A	chr7B	chrRA	chrRB	Nuclear genome	Mitochondrial genome
Total ORFs	12405	6198	1383	1383	1017	1017	760	760	674	674	523	522	439	439	407	407	990	990	12385	20
Verified ORFs	3980	1995	450	450	334	334	246	246	214	214	175	175	134	134	125	125	312	312	3980	0
Uncharacterized ORFs	8122	4051	907	907	665	665	494	494	442	442	332	332	292	292	269	269	650	650	8102	20
Dubious ORFs	303	152	26	26	18	18	20	20	18	18	16	15	13	13	13	13	28	28	303	0
tRNA	282	126	23	23	24	24	21	21	17	17	6	6	4	4	1	1	30	30	252	30
Long_terminal_repeat	257	129	25	25	20	20	10	10	14	14	10	10	10	10	11	11	29	28	257	0
snoRNA	150	75	22	22	13	13	3	3	11	11	5	5	4	4	3	3	14	14	150	0
Repeat_region	84	42	5	5	5	5	1	1	6	6	5	5	5	5	10	10	5	5	84	0
Retrotransposon	24	12	2	2	2	2	1	1	1	1	0	0	1	1	2	2	3	3	24	0
Centromere	16	8	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	16	0
Pseudogenes	16	8	1	1	1	1	0	0	0	0	1	1	1	1	0	0	4	4	16	0
Blocked_reading_frame	16	8	1	1	3	3	0	0	1	1	0	0	1	1	1	1	1	1	16	0
snRNA	10	5	0	0	1	1	1	1	1	1	0	0	0	0	0	0	2	2	10	0
rRNA	10	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	4	8	2
ncRNA	10	5	0	0	1	1	0	0	0	0	0	0	0	0	0	0	4	4	10	0
Total	13280	6620	1463	1463	1088	1088	798	798	726	726	551	550	466	466	436	436	1087	1086	13228	52
Chromosome length (bp)	28,605,416	15,473,749	3,188,341	3,188,396	2,231,883	2,231,750	1,799,297	1,799,270	1,603,259	1,603,311	1,190,869	1,190,991	1,033,292	1,033,212	949,580	949,611	2,286,237	2,285,697	28,564,996	40,420

Summary of Chromosome Sequence and Annotation updates

As new data become available, CGD curators update the systematic sequence and its annotation. This table summarizes the sequence and/or annotation updates made for each chromosome.

Select the chromosome number to retrieve the corresponding Chromosome History page, which provides details on all the updates for that chromosome. Current and past versions of the sequence and annotation are also available on the CGD Download Data page. Detailed information about the sequence data in CGD, including the sources from which sequence-based information are dervived, and a history of the reference strain genome assemblies, is found on the Sequence Documentation page.

If you are aware of additional sequence or annotation changes that should be made to the reference sequence, please send a message to CGD curators. At this time, CGD does not record sequence variation between SC5314 and other strains of C. albicans SC5314.