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New and Noteworthy | |
Expanded Curation of Clinical Data by ITS1 and ITS2 Features for All Species |
Representative copies of ITS1 and ITS2 features for C. auris, C. glabrata, C. dubliniensis, and C. parapsilosis have been added to complement those of C. albicans. The addition of locus pages for these transcribed spacers between rDNA genes (used for strain typing in clinical studies) will allow us to curate these studies by directing the literature to the loci used for identifying the strains. We hope this expansion of searchable clinical data will add value to the database for Candida researchers in medical fields.
(Posted July 10, 2023) |
CGD Curation News |
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Candida and Candidiasis Conference Now Open for Registration |
Candida and Candidiasis 2023 organized by the Microbiology Society will be held in Montreal, Canada on May 13–17, 2023. Abstract submissions are now open until Feb 17, 2023. Registration is now open with early-bird discounts until April 1.
(Posted January 19, 2023) |
New Assembly for Candida glabrata Genome |
We are pleased to announce the incorporation of a new assembly for the
C. glabrata CBS138 genome, which leveraged long-read sequencing
to correct previous assembly errors in repetitive regions
(Xu et al., 2020).
The sub-telomeric regions of all chromosomes were substantially lengthened,
resulting in changes of chromosomal coordinates for all genomic features.
31 new protein-coding genes were added. The rDNA region on Chr L was expanded
significantly, and a second rDNA region was added to Chr M. 62 genes from the
previous assembly were removed, and sequences were corrected for an additional
32 features, ranging from single-base changes to major structural rearrangements.
The update adds or corrects the sequences of 45 genes encoding GPI-anchored cell
wall proteins (GPI-CWPs), which contain many long tandem repeats.
See this page for a list of
added, modified, or removed features.
(Posted August 30, 2022)
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CGD Copyright © 2004-2023 The Board of Trustees, Leland Stanford Junior University.Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied. To cite CGD, please use the following reference: Skrzypek MS, Binkley J, Binkley G, Miyasato SR, Simison M, Sherlock G (2017). The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data. Nucleic Acids Res 45 (D1); D592-D596; see How to cite CGD. |