Candida parapsilosis CDC317 Genome Snapshot/Overview |
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This table reports the number and types of features annotated in CGD, per chromosome (excluding unmapped features). To get a list of all features of a certain type (e.g., Verified ORF, tRNA, etc.), select that feature type. To access more information on the individual chromosome (e.g., sequence, a listing of all features on that chromosome, etc.), select each chromosome name. (Feature types that are not yet annotated in CGD are not listed in the table below.)
Feature Type | Total | Chromosome | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Contig005504 | Contig005569 | Contig005806 | Contig005807 | Contig005809 | Contig006110 | Contig006139 | Contig006372 | Nuclear genome | Mitochondrial genome | ||
Total ORFs | 5837 | 375 | 1045 | 433 | 906 | 1412 | 427 | 423 | 796 | 5817 | 20 |
Verified ORFs | 113 | 7 | 20 | 5 | 17 | 22 | 12 | 12 | 17 | 112 | 1 |
Uncharacterized ORFs | 5724 | 368 | 1025 | 428 | 889 | 1390 | 415 | 411 | 779 | 5705 | 19 |
tRNA | 115 | 2 | 18 | 2 | 13 | 28 | 2 | 8 | 18 | 91 | 24 |
Pseudogenes | 26 | 0 | 6 | 4 | 3 | 7 | 1 | 2 | 3 | 26 | 0 |
rRNA | 6 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 4 | 2 |
ncRNA | 2 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 2 | 0 |
Total | 5986 | 377 | 1069 | 439 | 922 | 1447 | 436 | 433 | 817 | 5940 | 46 |
Chromosome length (bp) | 13,030,174 | 898,305 | 2,235,583 | 1,039,767 | 2,091,826 | 3,023,470 | 957,321 | 962,442 | 1,789,679 | 12,998,393 | 31,781 |
Chromosome History | Sequence Updates | Annotation Updates | ||
---|---|---|---|---|
Total Number | Last Update | Total Number | Last Update | |
0 | N/A | 1 | 2012-03-12 | |
0 | N/A | 1 | 2012-03-12 | |
0 | N/A | 1 | 2012-03-12 | |
0 | N/A | 1 | 2012-03-12 | |
0 | N/A | 1 | 2012-03-12 | |
0 | N/A | 1 | 2012-03-12 | |
0 | N/A | 1 | 2012-03-12 | |
0 | N/A | 1 | 2012-03-12 | |
0 | N/A | 7 | 2012-03-14 |
Ontology | Details of Annotations | |||||||||||||||||
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Total Number of Annotations | Graphical View ![]() | |||||||||||||||||
Molecular Function | 3991 | Go to Molecular Function Graph | ||||||||||||||||
Cellular Component | 3552 | Go to Cellular Component Graph | ||||||||||||||||
Biological Process | 4310 | Go to Biological Process Graph | ||||||||||||||||
All Ontologies | 11853 |
More information on GO and GO Slim can be found at SGD's GO help page or in the Gene Ontology documentation. To obtain the GO data summarized in these graphs, you may use the GO Slim Mapper, or view and download the file "C_parapsilosis_CDC317_go_distribution.tab" in the GO Slim downloads directory. An alternative processing of the same data is available in the file "GOSlim_gene_association.cgd.gz", also in the GO Slim downloads directory.
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CGD Copyright © 2004-2025 The Board of Trustees, Leland Stanford Junior University. Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied. To cite CGD, please use the following reference: Skrzypek MS, Binkley J, Binkley G, Miyasato SR, Simison M, Sherlock G (2017). The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data. Nucleic Acids Res 45 (D1); D592-D596; see How to cite CGD. |