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Datasets archived at CGD

CGD collects only published and freely available datasets.
Contact CGD Curators if you want to contribute your results

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Browse the archive directory here

  Andes et al. (2005) A Simple Approach for Estimating Gene Expression in Candida albicans Directly from a Systemic Infection Site. J Infect Dis 192(5):893-900.
   

Bachewich et al. (2005) Cell cycle arrest during S or M phase generates polarized growth via distinct signals in Candida albicans. Mol Microbiol. 2005 Aug;57(4):942-59.
   

Bensen et al. (2004) Transcriptional profiling in Candida albicans reveals new adaptive responses to extracellular pH and functions for Rim101p. Mol Microbiol 54(5):1335-51.
   

Bruno et al. (2006) Control of the C. albicans Cell Wall Damage Response by Transcriptional Regulator Cas5. PLoS Pathog. 2006 Mar 17;2(3):e21
   

Cao et al. (2005) cDNA microarray analysis of differential gene expression in Candida albicans biofilm exposed to farnesol. Antimicrob Agents Chemother. 2005 Feb;49(2):584-9.
   

Cao et al. (2006) The Flo8 Transcription Factor Is Essential for Hyphal Development and Virulence in Candida albicans. Mol Biol Cell 17(1):295-307.
   

Coste et al. (2004) TAC1, transcriptional activator of CDR genes, is a new transcription factor involved in the regulation of Candida albicans ABC transporters CDR1 and CDR2. Eukaryot Cell 3(6):1639-52.
   

Cowen et al. (2002) Population genomics of drug resistance in Candida albicans. Proc Natl Acad Sci U S A 99(14):9284-9.
   

De Groot et al. (2003) Genome-wide identification of fungal GPI proteins. Yeast. 2003 Jul 15;20(9):781-96.
   

Dignard et al. (2006) SST2, a Regulator of G-Protein Signaling for the Candida albicans Mating Response Pathway. Eukaryot Cell 5(1):192-202.
   

Doedt et al. (2004) APSES proteins regulate morphogenesis and metabolism in Candida albicans. Mol Biol Cell 15(7):3167-80.
   

Enjalbert et al. (2003) Stress-induced gene expression in Candida albicans: absence of a general stress response. Mol Biol Cell. 2003 Apr;14(4):1460-7.
   

Enjalbert et al. (2006) Role of the Hog1 Stress-activated Protein Kinase in the Global Transcriptional Response to Stress in the Fungal Pathogen Candida albicans. Mol Biol Cell 17(2):1018-32.
   

Forche et al. (2004) Genome-wide single-nucleotide polymorphism map for Candida albicans. Eukaryot Cell. 2004 Jun;3(3):705-14.
   

Fradin et al. (2003) Stage-specific gene expression of Candida albicans in human blood. Mol Microbiol. 2003 Mar;47(6):1523-43. Courtesy of the Galar Fungail Consortium
   

Fradin et al. (2005) Granulocytes govern the transcriptional response, morphology and proliferation of Candida albicans in human blood. Mol Microbiol. 2005 Apr;56(2):397-415. Courtesy of the Galar Fungail Consortium
   

Garcia-Sanchez et al. (2005) Global Roles of Ssn6 in Tup1- and Nrg1-dependent Gene Regulation in the Fungal Pathogen, Candida albicans. Mol Biol Cell 16(6):2913-25. Courtesy of the Galar Fungail Consortium; study supported by the European Commission, The Wellcome Trust, and the UK Biotechnology and Biological Sciences Research Council.
   

Gasch et al. (2004) Conservation and evolution of cis-regulatory systems in ascomycete fungi. PLoS Biol. 2004 Dec;2(12):e398.
   

Harcus D, et al. (2004) Transcription profiling of cyclic AMP signaling in Candida albicans. Mol Biol Cell 15(10):4490-9
   

Karababa et al. (2004) Comparison of gene expression profiles of Candida albicans azole-resistant clinical isolates and laboratory strains exposed to drugs inducing multidrug transporters. Antimicrob Agents Chemother 48(8):3064-79.
   

Karababa et al. (2006) CRZ1, a target of the calcineurin pathway in Candida albicans. Mol Microbiol. 2006 Mar;59(5):1429-51.
   

Lan et al. (2002) Metabolic specialization associated with phenotypic switching in Candida albicans. Proc Natl Acad Sci U S A 99(23):14907-12.
   

Liu et al. (2005) Genome-wide expression profiling of the response to azole, polyene, echinocandin, and pyrimidine antifungal agents in Candida albicans. Antimicrob Agents Chemother 49(6):2226-36N.
   

Mitrovich et al. (2007) Computational and experimental approaches double the number of known introns in the pathogenic yeast Candida albicans. Genome Res. 2007 Apr;17(4):492-502. Epub 2007 Mar 9.
   

Mitrovich and Guthrie (2007) Evolution of small nuclear RNAs in S. cerevisiae, C. albicans and other hemiascomycetous yeasts. RNA, in press


Murad et al. (2001) Transcript profiling in Candida albicans reveals new cellular functions for the transcriptional repressors CaTup1, CaMig1 and CaNrg1. Mol Microbiol 42(4):981-93.
   

Murillo et al. (2005) Genome-Wide Transcription Profiling of the Early Phase of Biofilm Formation by Candida albicans. Eukaryot Cell 4(9):1562-73.
   

Nicholls et al. (2004) Msn2- and Msn4-like transcription factors play no obvious roles in the stress responses of the fungal pathogen Candida albicans. Eukaryot Cell 3(5):1111-23.
   

Oberholzer et al. (2006) Transcript Profiles of Candida albicans Cortical Actin Patch Mutants Reflect Their Cellular Defects: Contribution of the Hog1p and Mkc1p Signaling Pathways. Eukaryot Cell 5(8):1252-65.
   

Rogers and Barker (2003) Genome-wide expression profile analysis reveals coordinately regulated genes associated with stepwise acquisition of azole resistance in Candida albicans clinical isolates. Antimicrob Agents Chemother 47(4):1220-7.
   

Yin et al. (2004) Proteomic response to amino acid starvation in Candida albicans and Saccharomyces cerevisiae. Proteomics. 2004 Aug;4(8):2425-36.
   



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